Wall clock time and date at job start Wed Apr 1 2020 01:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.51429 * 2 1 4 4 C 1.53236 * 109.49537 * 120.07156 * 2 1 3 5 5 N 1.47078 * 108.52233 * 173.78945 * 4 2 1 6 6 C 1.34777 * 120.88026 * 128.81674 * 5 4 2 7 7 O 1.21515 * 119.99886 * 180.02562 * 6 5 4 8 8 O 1.34641 * 120.00297 * 359.72005 * 6 5 4 9 9 C 1.45199 * 117.00160 * 180.27555 * 8 6 5 10 10 C 1.52998 * 109.47225 * 60.00247 * 9 8 6 11 11 C 1.52999 * 109.47076 * 180.02562 * 9 8 6 12 12 C 1.53004 * 109.47159 * 300.00546 * 9 8 6 13 13 C 1.47076 * 118.23867 * 309.08514 * 5 4 2 14 14 H 1.08996 * 109.63208 * 170.62120 * 13 5 4 15 15 C 1.52999 * 109.62774 * 291.20270 * 13 5 4 16 16 C 1.52782 * 108.76462 * 50.85253 * 13 5 4 17 17 N 1.46900 * 109.42338 * 306.42496 * 16 13 5 18 18 C 1.46900 * 111.00360 * 187.11484 * 17 16 13 19 19 C 1.50707 * 109.46814 * 301.17025 * 18 17 16 20 20 O 1.21293 * 120.00138 * 354.42359 * 19 18 17 21 21 N 1.34776 * 119.99839 * 174.41200 * 19 18 17 22 22 C 1.37099 * 120.00214 * 179.97438 * 21 19 18 23 23 H 1.08003 * 119.99454 * 0.02562 * 22 21 19 24 24 C 1.38938 * 120.00344 * 180.02562 * 22 21 19 25 25 N 1.31418 * 120.00426 * 180.02562 * 24 22 21 26 26 Si 1.86807 * 119.99964 * 0.02562 * 24 22 21 27 27 H 1.48501 * 109.46859 * 90.00057 * 26 24 22 28 28 H 1.48504 * 109.46927 * 210.00034 * 26 24 22 29 29 H 1.48493 * 109.46896 * 329.99803 * 26 24 22 30 30 H 1.08996 * 109.46885 * 293.69291 * 1 2 3 31 31 H 1.08998 * 109.46980 * 53.69383 * 1 2 3 32 32 H 1.08997 * 109.46811 * 173.69559 * 1 2 3 33 33 H 1.08996 * 109.63239 * 54.07459 * 4 2 1 34 34 H 1.09001 * 109.78772 * 293.59216 * 4 2 1 35 35 H 1.09007 * 109.47011 * 59.99877 * 10 9 8 36 36 H 1.08997 * 109.47625 * 179.97438 * 10 9 8 37 37 H 1.09005 * 109.47201 * 300.00723 * 10 9 8 38 38 H 1.09001 * 109.47133 * 60.00256 * 11 9 8 39 39 H 1.08997 * 109.47024 * 179.97438 * 11 9 8 40 40 H 1.08998 * 109.47225 * 300.00335 * 11 9 8 41 41 H 1.08996 * 109.47303 * 59.99527 * 12 9 8 42 42 H 1.09004 * 109.47060 * 180.02562 * 12 9 8 43 43 H 1.09001 * 109.47058 * 299.99748 * 12 9 8 44 44 H 1.08997 * 109.47038 * 60.00207 * 15 13 5 45 45 H 1.09005 * 109.47055 * 179.97438 * 15 13 5 46 46 H 1.08994 * 109.47117 * 299.99499 * 15 13 5 47 47 H 1.09003 * 109.56801 * 186.37206 * 16 13 5 48 48 H 1.09000 * 109.36156 * 66.35475 * 16 13 5 49 49 H 1.08995 * 109.46876 * 61.16599 * 18 17 16 50 50 H 1.08991 * 109.47573 * 181.17462 * 18 17 16 51 51 H 0.97000 * 120.00278 * 0.02562 * 21 19 18 52 52 H 0.96991 * 120.00511 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0414 -0.7238 1.2501 5 7 3.5043 -0.8432 1.1552 6 6 4.2978 -0.4492 2.1709 7 8 5.5045 -0.5547 2.0752 8 8 3.7537 0.0670 3.2891 9 6 4.6690 0.4758 4.3395 10 6 5.6103 1.5565 3.8037 11 6 3.8730 1.0326 5.5215 12 6 5.4884 -0.7314 4.8003 13 6 4.0785 -1.3985 -0.0797 14 1 5.1609 -1.2709 -0.0699 15 6 3.7332 -2.8853 -0.1839 16 6 3.4867 -0.6536 -1.2752 17 7 2.0202 -0.6938 -1.1985 18 6 1.4139 -0.1358 -2.4147 19 6 1.8728 1.2881 -2.5969 20 8 2.5479 1.8218 -1.7422 21 7 1.5331 1.9683 -3.7098 22 6 1.9501 3.2638 -3.8754 23 1 2.5511 3.7391 -3.1142 24 6 1.5995 3.9653 -5.0223 25 7 1.9996 5.2069 -5.1813 26 14 0.5595 3.1434 -6.3385 27 1 -0.8784 3.3813 -6.0534 28 1 0.9015 3.7126 -7.6668 29 1 0.8285 1.6830 -6.3417 30 1 -0.3633 0.4129 0.9410 31 1 -0.3633 0.6085 -0.8282 32 1 -0.3633 -1.0214 -0.1128 33 1 1.5958 -1.7169 1.3062 34 1 1.7776 -0.1534 2.1406 35 1 5.0266 2.4165 3.4753 36 1 6.2972 1.8637 4.5923 37 1 6.1774 1.1594 2.9616 38 1 3.2027 0.2624 5.9031 39 1 4.5601 1.3391 6.3101 40 1 3.2890 1.8925 5.1934 41 1 6.0554 -1.1284 3.9584 42 1 6.1752 -0.4245 5.5892 43 1 4.8178 -1.5012 5.1821 44 1 2.6501 -3.0064 -0.2021 45 1 4.1596 -3.2941 -1.1000 46 1 4.1436 -3.4147 0.6759 47 1 3.8156 -1.1275 -2.2000 48 1 3.8235 0.3829 -1.2579 49 1 1.7181 -0.7288 -3.2772 50 1 0.3281 -0.1586 -2.3228 51 1 0.9931 1.5416 -4.3932 52 1 1.7552 5.6965 -5.9821 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000494486571.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:37:21 Heat of formation + Delta-G solvation = -121.160559 kcal Electronic energy + Delta-G solvation = -32473.178230 eV Core-core repulsion = 28279.536144 eV Total energy + Delta-G solvation = -4193.642086 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.09775 -41.13410 -39.52749 -37.90190 -36.29063 -35.60671 -35.09687 -33.94525 -33.78837 -31.16276 -29.22737 -28.39461 -28.30727 -27.32137 -26.71995 -25.03850 -24.23670 -22.34087 -21.33308 -21.08467 -20.34413 -19.73110 -18.94798 -17.84513 -17.74745 -17.22496 -16.89969 -16.76721 -16.50993 -16.03119 -15.77654 -15.55739 -15.46689 -15.26959 -14.91331 -14.56448 -14.49613 -14.32332 -14.10564 -13.90736 -13.39830 -13.18985 -13.13151 -13.06193 -12.98492 -12.88754 -12.85595 -12.67398 -12.63616 -12.57905 -12.44770 -12.42199 -12.23441 -12.04895 -12.02502 -11.86529 -11.63822 -11.40580 -11.35724 -11.06946 -11.02736 -10.23754 -9.84238 -9.03049 -8.44273 -6.05044 1.09851 1.28840 1.33961 1.43351 1.73950 1.91717 2.21112 2.76952 2.90964 2.96394 3.13148 3.73105 3.77253 3.78790 3.87170 3.93395 4.00791 4.16062 4.21590 4.30153 4.41337 4.45971 4.52865 4.58998 4.60321 4.61499 4.64599 4.73454 4.73729 4.78565 4.82727 4.85809 4.87926 4.95569 4.98772 5.09704 5.14544 5.21664 5.25502 5.31726 5.36095 5.41567 5.47688 5.51064 5.51594 5.85782 5.95386 6.01891 6.34046 6.55650 6.86460 7.25380 7.37225 7.94761 8.73633 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.015608 B = 0.003001 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.571679 B = 9326.814149 C =10003.262020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.049 3.951 3 H 0.032 0.968 4 C 0.130 3.870 5 N -0.591 5.591 6 C 0.647 3.353 7 O -0.597 6.597 8 O -0.368 6.368 9 C 0.123 3.877 10 C -0.181 4.181 11 C -0.134 4.134 12 C -0.174 4.174 13 C 0.161 3.839 14 H 0.080 0.920 15 C -0.137 4.137 16 C 0.032 3.968 17 N -0.482 5.482 18 C 0.042 3.958 19 C 0.417 3.583 20 O -0.615 6.615 21 N -0.588 5.588 22 C -0.327 4.327 23 H 0.049 0.951 24 C -0.017 4.017 25 N -0.937 5.937 26 Si 0.966 3.034 27 H -0.256 1.256 28 H -0.277 1.277 29 H -0.228 1.228 30 H 0.071 0.929 31 H 0.047 0.953 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.090 0.910 35 H 0.048 0.952 36 H 0.095 0.905 37 H 0.056 0.944 38 H 0.076 0.924 39 H 0.104 0.896 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.092 0.908 43 H 0.067 0.933 44 H 0.079 0.921 45 H 0.083 0.917 46 H 0.050 0.950 47 H 0.098 0.902 48 H 0.028 0.972 49 H 0.124 0.876 50 H 0.129 0.871 51 H 0.390 0.610 52 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.387 -19.047 14.872 24.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.061 4.061 3 H 0.050 0.950 4 C 0.008 3.992 5 N -0.331 5.331 6 C 0.403 3.597 7 O -0.489 6.489 8 O -0.282 6.282 9 C 0.086 3.914 10 C -0.239 4.239 11 C -0.190 4.190 12 C -0.231 4.231 13 C 0.059 3.941 14 H 0.098 0.902 15 C -0.195 4.195 16 C -0.097 4.097 17 N -0.204 5.204 18 C -0.090 4.090 19 C 0.205 3.795 20 O -0.501 6.501 21 N -0.229 5.229 22 C -0.457 4.457 23 H 0.067 0.933 24 C -0.215 4.215 25 N -0.577 5.577 26 Si 0.786 3.214 27 H -0.180 1.180 28 H -0.203 1.203 29 H -0.151 1.151 30 H 0.090 0.910 31 H 0.066 0.934 32 H 0.110 0.890 33 H 0.118 0.882 34 H 0.108 0.892 35 H 0.067 0.933 36 H 0.114 0.886 37 H 0.075 0.925 38 H 0.095 0.905 39 H 0.122 0.878 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.110 0.890 43 H 0.086 0.914 44 H 0.098 0.902 45 H 0.102 0.898 46 H 0.069 0.931 47 H 0.116 0.884 48 H 0.046 0.954 49 H 0.141 0.859 50 H 0.147 0.853 51 H 0.226 0.774 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.684 -19.013 15.441 24.640 hybrid contribution 0.370 1.801 -1.184 2.187 sum -2.315 -17.212 14.257 22.469 Atomic orbital electron populations 1.21797 0.91650 1.03686 1.02348 1.22193 0.97206 0.96428 0.90251 0.94966 1.21916 0.77611 1.02181 0.97514 1.47255 1.07513 1.63840 1.14457 1.18170 0.83989 0.76696 0.80886 1.90846 1.14010 1.61795 1.82250 1.86295 1.41845 1.74725 1.25361 1.22432 0.89079 0.94898 0.84941 1.22483 1.00224 0.98001 1.03163 1.21870 1.00938 1.01620 0.94620 1.22423 1.00754 0.97202 1.02709 1.21231 0.97614 0.94919 0.80348 0.90187 1.21923 1.03717 0.91503 1.02354 1.22564 0.88893 0.99576 0.98640 1.62601 1.05694 1.50990 1.01118 1.22425 1.02800 0.88246 0.95482 1.22397 0.83797 0.91061 0.82236 1.90510 1.43541 1.72009 1.44042 1.42234 1.48837 1.12095 1.19767 1.18958 1.32214 0.88923 1.05563 0.93282 1.26173 0.98997 0.96057 1.00277 1.69817 1.46728 1.11576 1.29602 0.85348 0.78777 0.80231 0.77059 1.18014 1.20272 1.15091 0.91045 0.93382 0.88997 0.88161 0.89163 0.93331 0.88636 0.92509 0.90507 0.87751 0.91986 0.92196 0.88958 0.91401 0.90176 0.89808 0.93089 0.88366 0.95403 0.85859 0.85289 0.77449 0.91185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.49 71.98 0.61 -2.41 16 2 C 0.05 1.41 2.20 44.99 0.10 1.51 16 3 H 0.03 1.33 5.80 -2.39 -0.01 1.31 16 4 C 0.13 3.25 5.51 86.35 0.48 3.73 16 5 N -0.59 -17.64 2.71 -925.17 -2.51 -20.14 16 6 C 0.65 21.32 7.75 129.79 1.01 22.33 16 7 O -0.60 -22.03 11.33 19.79 0.22 -21.81 16 8 O -0.37 -10.68 8.56 -55.50 -0.48 -11.15 16 9 C 0.12 2.87 1.13 -10.79 -0.01 2.85 16 10 C -0.18 -4.69 8.37 71.98 0.60 -4.09 16 11 C -0.13 -2.14 8.85 71.98 0.64 -1.50 16 12 C -0.17 -3.62 8.37 71.98 0.60 -3.01 16 13 C 0.16 4.55 3.21 44.81 0.14 4.69 16 14 H 0.08 2.56 7.06 -2.39 -0.02 2.55 16 15 C -0.14 -2.78 9.20 71.98 0.66 -2.11 16 16 C 0.03 1.01 4.47 86.23 0.39 1.40 16 17 N -0.48 -13.22 4.16 -875.49 -3.64 -16.86 16 18 C 0.04 1.18 5.43 85.56 0.46 1.65 16 19 C 0.42 17.88 7.18 87.66 0.63 18.51 16 20 O -0.62 -32.61 11.25 -3.07 -0.03 -32.65 16 21 N -0.59 -26.94 5.09 -306.98 -1.56 -28.51 16 22 C -0.33 -19.05 10.16 84.04 0.85 -18.20 16 23 H 0.05 3.45 7.39 -2.91 -0.02 3.43 16 24 C -0.02 -0.92 5.50 84.92 0.47 -0.45 16 25 N -0.94 -56.81 13.96 21.66 0.30 -56.50 16 26 Si 0.97 38.32 27.74 68.60 1.90 40.23 16 27 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 28 H -0.28 -11.05 7.11 99.48 0.71 -10.34 16 29 H -0.23 -7.47 6.52 99.48 0.65 -6.83 16 30 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.05 1.19 6.60 -2.39 -0.02 1.17 16 32 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.10 1.96 7.65 -2.39 -0.02 1.94 16 34 H 0.09 2.23 6.98 -2.39 -0.02 2.21 16 35 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 36 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.06 1.84 5.88 -2.38 -0.01 1.83 16 38 H 0.08 1.07 8.14 -2.39 -0.02 1.06 16 39 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.06 1.62 5.88 -2.39 -0.01 1.60 16 42 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.08 1.51 7.09 -2.39 -0.02 1.49 16 45 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 46 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.10 2.69 8.11 -2.39 -0.02 2.67 16 48 H 0.03 1.20 5.67 -2.39 -0.01 1.19 16 49 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 50 H 0.13 2.93 6.02 -2.39 -0.01 2.91 16 51 H 0.39 14.66 5.76 -92.71 -0.53 14.13 16 52 H 0.28 15.45 8.31 -92.72 -0.77 14.68 16 Total: -1.00 -80.48 393.27 2.17 -78.32 By element: Atomic # 1 Polarization: 43.87 SS G_CDS: 0.33 Total: 44.20 kcal Atomic # 6 Polarization: 17.26 SS G_CDS: 7.63 Total: 24.89 kcal Atomic # 7 Polarization: -114.61 SS G_CDS: -7.41 Total: -122.02 kcal Atomic # 8 Polarization: -65.32 SS G_CDS: -0.29 Total: -65.61 kcal Atomic # 14 Polarization: 38.32 SS G_CDS: 1.90 Total: 40.23 kcal Total: -80.48 2.17 -78.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494486571.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.845 kcal (2) G-P(sol) polarization free energy of solvation -80.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds