Wall clock time and date at job start Wed Apr 1 2020 01:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.78327 * 2 1 4 4 C 1.53242 * 109.62894 * 239.51647 * 2 1 3 5 5 H 1.09000 * 109.49184 * 174.13408 * 4 2 1 6 6 C 1.52997 * 109.49085 * 54.07880 * 4 2 1 7 7 N 1.46898 * 109.33860 * 294.12186 * 4 2 1 8 8 C 1.46901 * 110.99815 * 172.74649 * 7 4 2 9 9 C 1.50705 * 109.47239 * 65.46720 * 8 7 4 10 10 O 1.21290 * 119.99902 * 354.00154 * 9 8 7 11 11 N 1.34774 * 120.00139 * 174.00809 * 9 8 7 12 12 C 1.37096 * 120.00024 * 179.97438 * 11 9 8 13 13 H 1.08000 * 120.00099 * 359.97438 * 12 11 9 14 14 C 1.38946 * 120.00201 * 180.02562 * 12 11 9 15 15 N 1.31407 * 120.00337 * 179.97438 * 14 12 11 16 16 Si 1.86807 * 119.99874 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.47472 * 90.00182 * 16 14 12 18 18 H 1.48496 * 109.47034 * 210.00392 * 16 14 12 19 19 H 1.48498 * 109.47001 * 329.99820 * 16 14 12 20 20 C 1.46907 * 111.26809 * 296.89276 * 7 4 2 21 21 C 1.52784 * 109.42079 * 62.96786 * 20 7 4 22 22 N 1.47079 * 108.76611 * 306.42426 * 21 20 7 23 23 C 1.34781 * 120.88341 * 231.12602 * 22 21 20 24 24 O 1.21510 * 119.99977 * 179.72378 * 23 22 21 25 25 O 1.34636 * 119.99187 * 359.71774 * 23 22 21 26 26 C 1.45208 * 116.99540 * 180.02562 * 25 23 22 27 27 C 1.53001 * 109.46873 * 60.00288 * 26 25 23 28 28 C 1.52998 * 109.47142 * 300.00327 * 26 25 23 29 29 C 1.52995 * 109.47428 * 180.02562 * 26 25 23 30 30 H 1.08993 * 109.46964 * 299.51304 * 1 2 3 31 31 H 1.09004 * 109.46965 * 59.51486 * 1 2 3 32 32 H 1.09005 * 109.47156 * 179.51116 * 1 2 3 33 33 H 1.09003 * 109.47462 * 53.26523 * 6 4 2 34 34 H 1.09004 * 109.46686 * 173.26124 * 6 4 2 35 35 H 1.09001 * 109.47384 * 293.25997 * 6 4 2 36 36 H 1.09005 * 109.47090 * 185.46334 * 8 7 4 37 37 H 1.08994 * 109.47558 * 305.46161 * 8 7 4 38 38 H 0.97004 * 119.99982 * 359.97438 * 11 9 8 39 39 H 0.97008 * 120.00307 * 179.97438 * 15 14 12 40 40 H 1.08997 * 109.48877 * 183.06759 * 20 7 4 41 41 H 1.08999 * 109.48875 * 303.12149 * 20 7 4 42 42 H 1.08994 * 109.55385 * 186.61033 * 21 20 7 43 43 H 1.08994 * 109.45680 * 66.18211 * 21 20 7 44 44 H 1.08994 * 109.47435 * 59.99555 * 27 26 25 45 45 H 1.09006 * 109.47059 * 299.99607 * 27 26 25 46 46 H 1.09004 * 109.47031 * 180.02562 * 27 26 25 47 47 H 1.09004 * 109.47077 * 179.97438 * 28 26 25 48 48 H 1.08996 * 109.47233 * 300.00113 * 28 26 25 49 49 H 1.09006 * 109.47496 * 59.99960 * 28 26 25 50 50 H 1.09003 * 109.46589 * 300.00108 * 29 26 25 51 51 H 1.08994 * 109.47202 * 59.99617 * 29 26 25 52 52 H 1.08997 * 109.47045 * 180.02562 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0256 0.0000 4 6 2.0448 -0.7322 -1.2439 5 1 3.1297 -0.6413 -1.2964 6 6 1.4193 -0.1138 -2.4957 7 7 1.6747 -2.1514 -1.1609 8 6 1.9978 -2.8535 -2.4102 9 6 3.4922 -2.8709 -2.6046 10 8 4.2100 -2.2576 -1.8431 11 7 4.0310 -3.5677 -3.6247 12 6 5.3904 -3.5830 -3.8019 13 1 6.0295 -3.0363 -3.1243 14 6 5.9459 -4.3009 -4.8538 15 7 7.2488 -4.3152 -5.0239 16 14 4.8404 -5.2459 -6.0263 17 1 4.4527 -4.3665 -7.1582 18 1 5.5689 -6.4306 -6.5469 19 1 3.6210 -5.6920 -5.3057 20 6 2.3148 -2.8027 -0.0102 21 6 1.8165 -2.1563 1.2814 22 7 2.0241 -0.7029 1.1938 23 6 2.6553 -0.0336 2.1788 24 8 2.8226 1.1665 2.0875 25 8 3.1003 -0.6949 3.2639 26 6 3.7705 0.0900 4.2853 27 6 2.8127 1.1574 4.8184 28 6 5.0030 0.7665 3.6818 29 6 4.2024 -0.8267 5.4315 30 1 -0.3633 0.5062 0.8943 31 1 -0.3633 0.5214 -0.8856 32 1 -0.3634 -1.0277 -0.0088 33 1 1.5910 0.9627 -2.4938 34 1 1.8742 -0.5526 -3.3838 35 1 0.3473 -0.3107 -2.5015 36 1 1.6263 -3.8770 -2.3583 37 1 1.5283 -2.3387 -3.2483 38 1 3.4570 -4.0584 -4.2335 39 1 7.6366 -4.8168 -5.7582 40 1 2.0650 -3.8636 -0.0075 41 1 3.3960 -2.6837 -0.0800 42 1 2.3747 -2.5555 2.1281 43 1 0.7546 -2.3676 1.4069 44 1 1.9346 0.6756 5.2483 45 1 2.5054 1.8105 4.0016 46 1 3.3159 1.7469 5.5848 47 1 5.5058 1.3561 4.4484 48 1 5.6853 0.0061 3.3019 49 1 4.6958 1.4196 2.8649 50 1 3.3245 -1.3089 5.8615 51 1 4.8848 -1.5868 5.0514 52 1 4.7050 -0.2373 6.1984 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000494624672.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:20:10 Heat of formation + Delta-G solvation = -95.805737 kcal Electronic energy + Delta-G solvation = -32499.127126 eV Core-core repulsion = 28306.584508 eV Total energy + Delta-G solvation = -4192.542618 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.92792 -39.78267 -38.09846 -36.62766 -34.82575 -34.17249 -33.64877 -33.04051 -31.77611 -29.20407 -28.52856 -27.51151 -27.42208 -26.62011 -24.82079 -23.54177 -22.58680 -21.83116 -19.76223 -19.45881 -18.82426 -18.17894 -17.59327 -16.75291 -16.22004 -15.98022 -15.76998 -15.16880 -15.08042 -14.94223 -14.53549 -14.31240 -14.22219 -13.87255 -13.62322 -13.30541 -13.08082 -12.90435 -12.69439 -12.49167 -12.40240 -12.26159 -12.07139 -12.01769 -11.96009 -11.84382 -11.67019 -11.54666 -11.46401 -11.37537 -11.28316 -11.18621 -10.77720 -10.67882 -10.63327 -10.40078 -10.34670 -10.06761 -9.87638 -9.56079 -9.37552 -8.64415 -8.24483 -7.53852 -6.38704 -3.90131 2.19615 2.96212 2.97238 3.01729 3.10572 3.61350 3.84895 4.03627 4.15078 4.60011 4.64363 4.68626 4.82832 4.89142 5.06731 5.10260 5.20408 5.30969 5.35240 5.40920 5.45399 5.50759 5.53623 5.56196 5.57540 5.62738 5.68824 5.75174 5.77877 5.79679 5.85278 5.85665 5.88524 5.89957 5.97193 6.10264 6.19924 6.26461 6.30121 6.34266 6.46355 6.52694 6.59483 6.65751 7.14820 7.29837 7.48467 7.53421 8.07514 8.45348 8.50094 8.87078 9.34537 9.72900 10.74105 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.015015 B = 0.003071 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.405422 B = 9115.364002 C =10153.703456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.166 3.834 3 H 0.099 0.901 4 C 0.056 3.944 5 H 0.088 0.912 6 C -0.145 4.145 7 N -0.504 5.504 8 C 0.034 3.966 9 C 0.415 3.585 10 O -0.575 6.575 11 N -0.583 5.583 12 C -0.308 4.308 13 H 0.118 0.882 14 C 0.043 3.957 15 N -0.878 5.878 16 Si 0.880 3.120 17 H -0.270 1.270 18 H -0.276 1.276 19 H -0.268 1.268 20 C 0.021 3.979 21 C 0.121 3.879 22 N -0.586 5.586 23 C 0.656 3.344 24 O -0.575 6.575 25 O -0.363 6.363 26 C 0.136 3.864 27 C -0.181 4.181 28 C -0.184 4.184 29 C -0.140 4.140 30 H 0.047 0.953 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.371 0.629 39 H 0.274 0.726 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.089 0.911 43 H 0.070 0.930 44 H 0.057 0.943 45 H 0.087 0.913 46 H 0.067 0.933 47 H 0.067 0.933 48 H 0.061 0.939 49 H 0.088 0.912 50 H 0.065 0.935 51 H 0.067 0.933 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.325 5.378 14.087 20.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.064 3.936 3 H 0.117 0.883 4 C -0.053 4.053 5 H 0.106 0.894 6 C -0.203 4.203 7 N -0.228 5.228 8 C -0.098 4.098 9 C 0.201 3.799 10 O -0.460 6.460 11 N -0.221 5.221 12 C -0.437 4.437 13 H 0.136 0.864 14 C -0.161 4.161 15 N -0.518 5.518 16 Si 0.706 3.294 17 H -0.196 1.196 18 H -0.201 1.201 19 H -0.194 1.194 20 C -0.108 4.108 21 C -0.002 4.002 22 N -0.326 5.326 23 C 0.411 3.589 24 O -0.465 6.465 25 O -0.278 6.278 26 C 0.099 3.901 27 C -0.238 4.238 28 C -0.241 4.241 29 C -0.197 4.197 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.107 0.893 37 H 0.114 0.886 38 H 0.204 0.796 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.100 0.900 42 H 0.107 0.893 43 H 0.088 0.912 44 H 0.076 0.924 45 H 0.106 0.894 46 H 0.086 0.914 47 H 0.086 0.914 48 H 0.080 0.920 49 H 0.107 0.893 50 H 0.084 0.916 51 H 0.086 0.914 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.064 6.066 14.609 21.166 hybrid contribution 0.309 -0.936 -1.212 1.562 sum -13.755 5.130 13.397 19.874 Atomic orbital electron populations 1.22074 0.94532 1.03118 1.01439 1.21329 0.94246 0.96405 0.81653 0.88300 1.22221 1.01513 0.87882 0.93704 0.89413 1.21922 1.01091 1.00392 0.96911 1.62487 1.56339 1.01983 1.01982 1.22189 0.93238 1.00375 0.93959 1.21036 0.90562 0.84444 0.83904 1.90470 1.62568 1.47017 1.45913 1.42401 1.08098 1.44942 1.26688 1.19439 0.80681 1.30144 1.13392 0.86406 1.25077 0.95830 0.97634 0.97551 1.69625 1.09702 1.41235 1.31191 0.86665 0.80482 0.80525 0.81697 1.19552 1.20134 1.19385 1.22639 1.01100 0.97733 0.89307 1.21696 1.01262 0.78770 0.98481 1.47077 1.58318 1.08757 1.18412 1.17929 0.77232 0.83731 0.80005 1.90854 1.61942 1.13445 1.80236 1.86293 1.70596 1.42043 1.28820 1.22022 0.91811 0.90866 0.85411 1.22499 0.99237 0.99333 1.02762 1.22516 0.96717 1.01910 1.02980 1.21847 1.02107 0.99764 0.96004 0.93349 0.91219 0.91018 0.92167 0.92132 0.91663 0.89276 0.88562 0.79622 0.91522 0.90283 0.90012 0.89251 0.91197 0.92393 0.89388 0.91376 0.91392 0.91982 0.89331 0.91628 0.91361 0.90322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 8.67 37.16 0.32 -1.42 16 2 C 0.17 2.34 2.82 -67.49 -0.19 2.15 16 3 H 0.10 1.51 7.06 -51.93 -0.37 1.14 16 4 C 0.06 0.86 1.90 -67.59 -0.13 0.73 16 5 H 0.09 1.77 5.79 -51.93 -0.30 1.47 16 6 C -0.15 -1.88 7.72 37.16 0.29 -1.59 16 7 N -0.50 -7.41 4.16 -228.07 -0.95 -8.36 16 8 C 0.03 0.53 5.43 -4.97 -0.03 0.50 16 9 C 0.41 8.78 7.18 -10.98 -0.08 8.70 16 10 O -0.57 -14.26 11.25 5.55 0.06 -14.20 16 11 N -0.58 -13.31 5.09 -10.96 -0.06 -13.37 16 12 C -0.31 -8.49 10.16 -14.94 -0.15 -8.64 16 13 H 0.12 3.76 7.39 -52.49 -0.39 3.37 16 14 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 15 N -0.88 -25.33 13.96 55.50 0.77 -24.56 16 16 Si 0.88 18.94 27.74 -169.99 -4.71 14.23 16 17 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 18 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 19 H -0.27 -5.23 6.52 56.52 0.37 -4.86 16 20 C 0.02 0.31 5.09 -3.93 -0.02 0.29 16 21 C 0.12 1.59 6.19 -3.84 -0.02 1.57 16 22 N -0.59 -8.68 2.71 -170.95 -0.46 -9.14 16 23 C 0.66 10.43 7.75 54.06 0.42 10.85 16 24 O -0.57 -9.98 11.33 -19.28 -0.22 -10.20 16 25 O -0.36 -5.20 8.57 -40.31 -0.35 -5.55 16 26 C 0.14 1.61 1.13 -90.62 -0.10 1.51 16 27 C -0.18 -1.96 8.37 37.16 0.31 -1.65 16 28 C -0.18 -2.29 8.37 37.16 0.31 -1.98 16 29 C -0.14 -1.25 8.85 37.16 0.33 -0.93 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.70 6.57 -51.93 -0.34 0.35 16 32 H 0.07 0.82 7.09 -51.93 -0.37 0.45 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.85 6.63 -51.93 -0.34 0.50 16 35 H 0.06 0.72 6.80 -51.93 -0.35 0.37 16 36 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.10 1.32 6.03 -51.93 -0.31 1.01 16 38 H 0.37 7.45 5.76 -40.82 -0.24 7.21 16 39 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 40 H 0.08 1.08 8.11 -51.93 -0.42 0.65 16 41 H 0.08 1.60 5.68 -51.93 -0.30 1.31 16 42 H 0.09 1.13 6.99 -51.93 -0.36 0.77 16 43 H 0.07 0.80 7.65 -51.93 -0.40 0.40 16 44 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.09 1.16 5.88 -51.93 -0.31 0.86 16 46 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 48 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.09 1.33 5.88 -51.93 -0.31 1.02 16 50 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 51 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 52 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 389.73 15.07 5.87 5.87 Total: -1.00 -32.04 389.73 -7.37 -39.41 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: -8.49 Total: 14.73 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: 1.16 Total: 11.13 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: -0.69 Total: -55.43 kcal Atomic # 8 Polarization: -29.45 SS G_CDS: -0.50 Total: -29.95 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -4.71 Total: 14.23 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.04 -7.37 -39.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494624672.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.392 kcal (2) G-P(sol) polarization free energy of solvation -32.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds