Wall clock time and date at job start Wed Apr 1 2020 01:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.51202 * 2 1 4 4 C 1.53236 * 109.49072 * 120.06888 * 2 1 3 5 5 H 1.08992 * 109.63157 * 53.88258 * 4 2 1 6 6 C 1.53003 * 109.62868 * 293.49834 * 4 2 1 7 7 N 1.47083 * 108.52037 * 173.79318 * 4 2 1 8 8 C 1.34779 * 120.88275 * 128.83565 * 7 4 2 9 9 O 1.21507 * 119.99845 * 5.64417 * 8 7 4 10 10 O 1.34631 * 119.99787 * 185.64137 * 8 7 4 11 11 C 1.45202 * 116.99686 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.46921 * 60.00639 * 11 10 8 13 13 C 1.53007 * 109.46887 * 180.02562 * 11 10 8 14 14 C 1.52998 * 109.47425 * 300.00333 * 11 10 8 15 15 C 1.47073 * 118.23330 * 308.81329 * 7 4 2 16 16 C 1.53241 * 108.52404 * 51.18764 * 15 7 4 17 17 N 1.46896 * 109.33644 * 306.16581 * 16 15 7 18 18 C 1.46898 * 111.00085 * 187.25142 * 17 16 15 19 19 C 1.50704 * 109.47234 * 299.78899 * 18 17 16 20 20 O 1.21291 * 119.99933 * 354.55187 * 19 18 17 21 21 N 1.34771 * 119.99839 * 174.28611 * 19 18 17 22 22 C 1.37098 * 119.99885 * 179.97438 * 21 19 18 23 23 H 1.08004 * 119.99974 * 0.02562 * 22 21 19 24 24 C 1.38952 * 120.00226 * 179.97438 * 22 21 19 25 25 N 1.31413 * 119.99746 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 119.99928 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47114 * 90.00193 * 26 24 22 28 28 H 1.48503 * 109.46786 * 210.00211 * 26 24 22 29 29 H 1.48502 * 109.47272 * 329.99755 * 26 24 22 30 30 H 1.09005 * 109.47065 * 182.65628 * 1 2 3 31 31 H 1.08999 * 109.47351 * 302.66054 * 1 2 3 32 32 H 1.09008 * 109.47454 * 62.65916 * 1 2 3 33 33 H 1.09001 * 109.47085 * 52.41093 * 6 4 2 34 34 H 1.08995 * 109.47135 * 172.41021 * 6 4 2 35 35 H 1.08999 * 109.47284 * 292.41330 * 6 4 2 36 36 H 1.08990 * 109.47612 * 59.99531 * 12 11 10 37 37 H 1.09003 * 109.46854 * 180.02562 * 12 11 10 38 38 H 1.09001 * 109.46387 * 299.99177 * 12 11 10 39 39 H 1.09000 * 109.47006 * 60.00028 * 13 11 10 40 40 H 1.08997 * 109.46451 * 180.02562 * 13 11 10 41 41 H 1.09000 * 109.46725 * 299.99679 * 13 11 10 42 42 H 1.08997 * 109.46887 * 59.99795 * 14 11 10 43 43 H 1.08999 * 109.47394 * 180.02562 * 14 11 10 44 44 H 1.09000 * 109.46863 * 300.00214 * 14 11 10 45 45 H 1.09001 * 109.62771 * 170.89508 * 15 7 4 46 46 H 1.09004 * 109.62999 * 291.27655 * 15 7 4 47 47 H 1.09003 * 109.48888 * 186.21117 * 16 15 7 48 48 H 1.08997 * 109.49110 * 66.12542 * 16 15 7 49 49 H 1.08995 * 109.47521 * 179.78292 * 18 17 16 50 50 H 1.09003 * 109.46881 * 59.78363 * 18 17 16 51 51 H 0.97002 * 120.00414 * 359.97438 * 21 19 18 52 52 H 0.97001 * 119.99825 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0413 -0.7238 1.2501 5 1 1.5930 -1.7156 1.3081 6 6 1.6711 0.0811 2.4976 7 7 3.5042 -0.8432 1.1554 8 6 4.2976 -0.4494 2.1712 9 8 3.8053 -0.0849 3.2206 10 8 5.6357 -0.4601 2.0233 11 6 6.4280 -0.0224 3.1587 12 6 6.1401 -0.9255 4.3598 13 6 7.9144 -0.1024 2.8046 14 6 6.0644 1.4221 3.5079 15 6 4.0781 -1.4041 -0.0771 16 6 3.4866 -0.6535 -1.2751 17 7 2.0202 -0.6938 -1.1985 18 6 1.4140 -0.1358 -2.4146 19 6 1.8458 1.2987 -2.5785 20 8 2.5042 1.8365 -1.7134 21 7 1.5049 1.9824 -3.6888 22 6 1.8973 3.2875 -3.8377 23 1 2.4799 3.7677 -3.0654 24 6 1.5463 3.9923 -4.9827 25 7 0.8378 3.4079 -5.9225 26 14 2.0816 5.7704 -5.1857 27 1 3.4022 5.8155 -5.8633 28 1 1.0796 6.4984 -6.0052 29 1 2.1882 6.4109 -3.8502 30 1 -0.3633 -1.0266 0.0476 31 1 -0.3634 0.5546 0.8651 32 1 -0.3634 0.4720 -0.9129 33 1 0.6030 0.2984 2.4860 34 1 1.9146 -0.4973 3.3887 35 1 2.2318 1.0158 2.5066 36 1 6.3990 -1.9545 4.1111 37 1 6.7344 -0.5966 5.2123 38 1 5.0811 -0.8680 4.6119 39 1 8.1192 0.5411 1.9490 40 1 8.5090 0.2257 3.6571 41 1 8.1736 -1.1315 2.5557 42 1 5.0055 1.4795 3.7599 43 1 6.6594 1.7508 4.3599 44 1 6.2695 2.0654 2.6521 45 1 5.1610 -1.2804 -0.0660 46 1 3.8313 -2.4635 -0.1469 47 1 3.8157 -1.1276 -2.1998 48 1 3.8235 0.3830 -1.2572 49 1 0.3280 -0.1813 -2.3331 50 1 1.7379 -0.7138 -3.2801 51 1 0.9819 1.5510 -4.3826 52 1 0.5924 3.9000 -6.7217 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000494624674.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:20:13 Heat of formation + Delta-G solvation = -89.573306 kcal Electronic energy + Delta-G solvation = -32593.927250 eV Core-core repulsion = 28401.654890 eV Total energy + Delta-G solvation = -4192.272360 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.98863 -39.61342 -38.01555 -36.58276 -34.76761 -34.16499 -33.60801 -33.05616 -31.35452 -28.91237 -28.50182 -27.49724 -27.42767 -26.38699 -24.81549 -23.72942 -22.09522 -21.71515 -20.11653 -19.31157 -19.02033 -17.87464 -17.39050 -16.62333 -16.24031 -15.91319 -15.75273 -15.27164 -14.89658 -14.67759 -14.50032 -14.31161 -13.89240 -13.84013 -13.66402 -13.50143 -13.38123 -12.68494 -12.55674 -12.44976 -12.27056 -12.24080 -11.97394 -11.93274 -11.80905 -11.69797 -11.62580 -11.49824 -11.29564 -11.23663 -11.12925 -10.98735 -10.82072 -10.62460 -10.44570 -10.40597 -10.30937 -10.28755 -9.50551 -9.27949 -9.20990 -8.53366 -8.03312 -7.44472 -6.48826 -3.90143 2.23408 2.98683 3.11864 3.21818 3.27487 3.78924 3.86829 4.11829 4.21791 4.64900 4.69075 4.83175 4.89832 5.03898 5.10051 5.16047 5.23611 5.35231 5.41442 5.44180 5.45675 5.52937 5.56536 5.57863 5.68870 5.69442 5.77644 5.79233 5.86275 5.87806 5.90459 5.95725 6.02242 6.10408 6.18300 6.20173 6.26096 6.31841 6.34250 6.47819 6.53081 6.56938 6.70601 6.80413 7.25397 7.39138 7.48011 7.60355 7.97677 8.49823 8.52322 9.09857 9.45719 9.96334 10.67675 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013430 B = 0.003126 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.348142 B = 8955.847254 C = 9973.153955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.053 3.947 3 H 0.091 0.909 4 C 0.173 3.827 5 H 0.075 0.925 6 C -0.140 4.140 7 N -0.588 5.588 8 C 0.655 3.345 9 O -0.567 6.567 10 O -0.366 6.366 11 C 0.137 3.863 12 C -0.181 4.181 13 C -0.140 4.140 14 C -0.183 4.183 15 C 0.121 3.879 16 C 0.024 3.976 17 N -0.510 5.510 18 C 0.036 3.964 19 C 0.406 3.594 20 O -0.593 6.593 21 N -0.556 5.556 22 C -0.302 4.302 23 H 0.102 0.898 24 C 0.025 3.975 25 N -0.898 5.898 26 Si 0.929 3.071 27 H -0.278 1.278 28 H -0.283 1.283 29 H -0.270 1.270 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.051 0.949 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.057 0.943 37 H 0.066 0.934 38 H 0.088 0.912 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.065 0.935 42 H 0.088 0.912 43 H 0.066 0.934 44 H 0.060 0.940 45 H 0.089 0.911 46 H 0.070 0.930 47 H 0.078 0.922 48 H 0.080 0.920 49 H 0.096 0.904 50 H 0.088 0.912 51 H 0.393 0.607 52 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.367 -11.270 13.870 18.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.056 4.056 3 H 0.109 0.891 4 C 0.071 3.929 5 H 0.093 0.907 6 C -0.198 4.198 7 N -0.328 5.328 8 C 0.410 3.590 9 O -0.458 6.458 10 O -0.281 6.281 11 C 0.100 3.900 12 C -0.238 4.238 13 C -0.198 4.198 14 C -0.240 4.240 15 C -0.002 4.002 16 C -0.105 4.105 17 N -0.233 5.233 18 C -0.095 4.095 19 C 0.192 3.808 20 O -0.480 6.480 21 N -0.191 5.191 22 C -0.432 4.432 23 H 0.120 0.880 24 C -0.177 4.177 25 N -0.539 5.539 26 Si 0.756 3.244 27 H -0.204 1.204 28 H -0.208 1.208 29 H -0.194 1.194 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.107 0.893 39 H 0.086 0.914 40 H 0.096 0.904 41 H 0.084 0.916 42 H 0.107 0.893 43 H 0.085 0.915 44 H 0.079 0.921 45 H 0.107 0.893 46 H 0.088 0.912 47 H 0.096 0.904 48 H 0.098 0.902 49 H 0.114 0.886 50 H 0.106 0.894 51 H 0.226 0.774 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.516 -11.207 14.648 19.561 hybrid contribution 0.209 1.511 -0.940 1.792 sum 6.725 -9.696 13.708 18.087 Atomic orbital electron populations 1.21919 0.94209 1.01821 1.02356 1.22306 0.95238 0.99345 0.88742 0.89100 1.21368 0.76182 0.99503 0.95856 0.90661 1.22240 0.99772 1.01308 0.96440 1.47098 1.06030 1.64201 1.15495 1.18023 0.80574 0.76941 0.83417 1.90899 1.74129 1.53304 1.27466 1.86302 1.17344 1.80825 1.43602 1.21989 0.89757 0.94549 0.83740 1.22496 1.05103 0.99065 0.97134 1.21852 0.92003 1.03172 1.02738 1.22511 1.04976 0.94566 1.01995 1.21813 0.98295 0.97342 0.82776 1.22669 0.88359 1.02301 0.97163 1.62459 1.06463 1.52814 1.01544 1.22153 1.00977 0.92840 0.93555 1.21070 0.86237 0.89208 0.84311 1.90423 1.44168 1.70826 1.42576 1.42049 1.47282 1.12234 1.17530 1.19702 1.31804 0.87392 1.04289 0.88030 1.25278 0.96678 1.00426 0.95364 1.69608 1.37510 1.37987 1.08779 0.85876 0.78246 0.81773 0.78527 1.20351 1.20829 1.19428 0.92270 0.92061 0.91840 0.93067 0.90396 0.91628 0.92432 0.91483 0.89320 0.91416 0.90396 0.91640 0.89281 0.91501 0.92109 0.89252 0.91158 0.90375 0.90242 0.88638 0.89372 0.77395 0.91749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 8.55 37.16 0.32 -1.73 16 2 C 0.05 0.85 1.64 -67.59 -0.11 0.74 16 3 H 0.09 1.88 5.70 -51.93 -0.30 1.59 16 4 C 0.17 2.53 3.10 -67.49 -0.21 2.32 16 5 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 6 C -0.14 -2.02 7.56 37.16 0.28 -1.74 16 7 N -0.59 -8.87 3.01 -170.68 -0.51 -9.39 16 8 C 0.65 10.18 7.51 54.06 0.41 10.59 16 9 O -0.57 -9.14 7.60 -19.28 -0.15 -9.29 16 10 O -0.37 -5.22 8.57 -40.30 -0.35 -5.57 16 11 C 0.14 1.59 1.13 -90.61 -0.10 1.49 16 12 C -0.18 -1.91 8.37 37.16 0.31 -1.60 16 13 C -0.14 -1.26 8.85 37.16 0.33 -0.93 16 14 C -0.18 -2.21 8.37 37.16 0.31 -1.89 16 15 C 0.12 1.65 6.63 -3.60 -0.02 1.62 16 16 C 0.02 0.38 5.13 -3.70 -0.02 0.36 16 17 N -0.51 -8.11 4.68 -227.79 -1.07 -9.18 16 18 C 0.04 0.61 5.39 -4.97 -0.03 0.59 16 19 C 0.41 9.02 7.18 -10.99 -0.08 8.94 16 20 O -0.59 -14.92 11.25 5.55 0.06 -14.86 16 21 N -0.56 -13.58 5.29 -10.96 -0.06 -13.64 16 22 C -0.30 -8.23 9.68 -14.93 -0.14 -8.37 16 23 H 0.10 2.93 7.16 -52.48 -0.38 2.55 16 24 C 0.02 0.65 5.50 -17.47 -0.10 0.56 16 25 N -0.90 -23.99 13.05 55.50 0.72 -23.26 16 26 Si 0.93 20.82 29.55 -169.99 -5.02 15.79 16 27 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 28 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 29 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.80 6.61 -51.93 -0.34 0.46 16 32 H 0.06 0.96 6.08 -51.92 -0.32 0.65 16 33 H 0.05 0.65 6.39 -51.93 -0.33 0.32 16 34 H 0.08 1.13 6.62 -51.93 -0.34 0.79 16 35 H 0.06 1.10 6.95 -51.93 -0.36 0.74 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.09 1.13 5.88 -51.93 -0.31 0.82 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.09 1.27 5.88 -51.93 -0.31 0.97 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.09 1.16 6.97 -51.93 -0.36 0.80 16 46 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 47 H 0.08 1.13 8.11 -51.93 -0.42 0.71 16 48 H 0.08 1.60 5.77 -51.93 -0.30 1.30 16 49 H 0.10 1.48 5.90 -51.93 -0.31 1.18 16 50 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 51 H 0.39 9.23 7.90 -40.82 -0.32 8.91 16 52 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 388.68 15.07 5.86 5.86 Total: -1.00 -30.06 388.68 -7.84 -37.90 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: -8.47 Total: 14.69 kcal Atomic # 6 Polarization: 9.79 SS G_CDS: 1.14 Total: 10.93 kcal Atomic # 7 Polarization: -54.55 SS G_CDS: -0.91 Total: -55.46 kcal Atomic # 8 Polarization: -29.28 SS G_CDS: -0.43 Total: -29.71 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.06 -7.84 -37.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494624674.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.672 kcal (2) G-P(sol) polarization free energy of solvation -30.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds