Wall clock time and date at job start Wed Apr 1 2020 01:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.51202 * 2 1 4 4 C 1.53236 * 109.49072 * 120.06888 * 2 1 3 5 5 H 1.08992 * 109.63157 * 53.88258 * 4 2 1 6 6 C 1.53003 * 109.62868 * 293.49834 * 4 2 1 7 7 N 1.47083 * 108.52037 * 173.79318 * 4 2 1 8 8 C 1.34779 * 120.88275 * 128.83565 * 7 4 2 9 9 O 1.21507 * 119.99845 * 5.64417 * 8 7 4 10 10 O 1.34631 * 119.99787 * 185.64137 * 8 7 4 11 11 C 1.45202 * 116.99686 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.46921 * 60.00639 * 11 10 8 13 13 C 1.53007 * 109.46887 * 180.02562 * 11 10 8 14 14 C 1.52998 * 109.47425 * 300.00333 * 11 10 8 15 15 C 1.47073 * 118.23330 * 308.81329 * 7 4 2 16 16 C 1.53241 * 108.52404 * 51.18764 * 15 7 4 17 17 N 1.46896 * 109.33644 * 306.16581 * 16 15 7 18 18 C 1.46898 * 111.00085 * 187.25142 * 17 16 15 19 19 C 1.50704 * 109.47234 * 299.78899 * 18 17 16 20 20 O 1.21291 * 119.99933 * 354.55187 * 19 18 17 21 21 N 1.34771 * 119.99839 * 174.28611 * 19 18 17 22 22 C 1.37098 * 119.99885 * 179.97438 * 21 19 18 23 23 H 1.08004 * 119.99974 * 0.02562 * 22 21 19 24 24 C 1.38952 * 120.00226 * 179.97438 * 22 21 19 25 25 N 1.31413 * 119.99746 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 119.99928 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47114 * 90.00193 * 26 24 22 28 28 H 1.48503 * 109.46786 * 210.00211 * 26 24 22 29 29 H 1.48502 * 109.47272 * 329.99755 * 26 24 22 30 30 H 1.09005 * 109.47065 * 182.65628 * 1 2 3 31 31 H 1.08999 * 109.47351 * 302.66054 * 1 2 3 32 32 H 1.09008 * 109.47454 * 62.65916 * 1 2 3 33 33 H 1.09001 * 109.47085 * 52.41093 * 6 4 2 34 34 H 1.08995 * 109.47135 * 172.41021 * 6 4 2 35 35 H 1.08999 * 109.47284 * 292.41330 * 6 4 2 36 36 H 1.08990 * 109.47612 * 59.99531 * 12 11 10 37 37 H 1.09003 * 109.46854 * 180.02562 * 12 11 10 38 38 H 1.09001 * 109.46387 * 299.99177 * 12 11 10 39 39 H 1.09000 * 109.47006 * 60.00028 * 13 11 10 40 40 H 1.08997 * 109.46451 * 180.02562 * 13 11 10 41 41 H 1.09000 * 109.46725 * 299.99679 * 13 11 10 42 42 H 1.08997 * 109.46887 * 59.99795 * 14 11 10 43 43 H 1.08999 * 109.47394 * 180.02562 * 14 11 10 44 44 H 1.09000 * 109.46863 * 300.00214 * 14 11 10 45 45 H 1.09001 * 109.62771 * 170.89508 * 15 7 4 46 46 H 1.09004 * 109.62999 * 291.27655 * 15 7 4 47 47 H 1.09003 * 109.48888 * 186.21117 * 16 15 7 48 48 H 1.08997 * 109.49110 * 66.12542 * 16 15 7 49 49 H 1.08995 * 109.47521 * 179.78292 * 18 17 16 50 50 H 1.09003 * 109.46881 * 59.78363 * 18 17 16 51 51 H 0.97002 * 120.00414 * 359.97438 * 21 19 18 52 52 H 0.97001 * 119.99825 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0413 -0.7238 1.2501 5 1 1.5930 -1.7156 1.3081 6 6 1.6711 0.0811 2.4976 7 7 3.5042 -0.8432 1.1554 8 6 4.2976 -0.4494 2.1712 9 8 3.8053 -0.0849 3.2206 10 8 5.6357 -0.4601 2.0233 11 6 6.4280 -0.0224 3.1587 12 6 6.1401 -0.9255 4.3598 13 6 7.9144 -0.1024 2.8046 14 6 6.0644 1.4221 3.5079 15 6 4.0781 -1.4041 -0.0771 16 6 3.4866 -0.6535 -1.2751 17 7 2.0202 -0.6938 -1.1985 18 6 1.4140 -0.1358 -2.4146 19 6 1.8458 1.2987 -2.5785 20 8 2.5042 1.8365 -1.7134 21 7 1.5049 1.9824 -3.6888 22 6 1.8973 3.2875 -3.8377 23 1 2.4799 3.7677 -3.0654 24 6 1.5463 3.9923 -4.9827 25 7 0.8378 3.4079 -5.9225 26 14 2.0816 5.7704 -5.1857 27 1 3.4022 5.8155 -5.8633 28 1 1.0796 6.4984 -6.0052 29 1 2.1882 6.4109 -3.8502 30 1 -0.3633 -1.0266 0.0476 31 1 -0.3634 0.5546 0.8651 32 1 -0.3634 0.4720 -0.9129 33 1 0.6030 0.2984 2.4860 34 1 1.9146 -0.4973 3.3887 35 1 2.2318 1.0158 2.5066 36 1 6.3990 -1.9545 4.1111 37 1 6.7344 -0.5966 5.2123 38 1 5.0811 -0.8680 4.6119 39 1 8.1192 0.5411 1.9490 40 1 8.5090 0.2257 3.6571 41 1 8.1736 -1.1315 2.5557 42 1 5.0055 1.4795 3.7599 43 1 6.6594 1.7508 4.3599 44 1 6.2695 2.0654 2.6521 45 1 5.1610 -1.2804 -0.0660 46 1 3.8313 -2.4635 -0.1469 47 1 3.8157 -1.1276 -2.1998 48 1 3.8235 0.3830 -1.2572 49 1 0.3280 -0.1813 -2.3331 50 1 1.7379 -0.7138 -3.2801 51 1 0.9819 1.5510 -4.3826 52 1 0.5924 3.9000 -6.7217 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000494624674.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:20:12 Heat of formation + Delta-G solvation = -110.431874 kcal Electronic energy + Delta-G solvation = -32594.831745 eV Core-core repulsion = 28401.654890 eV Total energy + Delta-G solvation = -4193.176855 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.15773 -41.02910 -39.46309 -37.87377 -36.19519 -35.67331 -34.94339 -34.22346 -33.32659 -30.28206 -29.70651 -28.35660 -28.27552 -27.85650 -26.45073 -25.09331 -23.28073 -22.96212 -21.44263 -20.85411 -20.31198 -19.75668 -18.58065 -17.79435 -17.73419 -17.17805 -17.05834 -16.55081 -16.43382 -16.24382 -15.68363 -15.54307 -15.50695 -15.32772 -14.96580 -14.70938 -14.49385 -14.00272 -13.76928 -13.59354 -13.50891 -13.31062 -13.22571 -13.05439 -12.98332 -12.91513 -12.86682 -12.72814 -12.66647 -12.46855 -12.41923 -12.37256 -12.18543 -12.04776 -11.99621 -11.86145 -11.79430 -11.35154 -11.31768 -10.98801 -10.37732 -10.00777 -9.74563 -9.01395 -8.48492 -5.98075 1.15245 1.32937 1.37612 1.49473 1.80696 2.00897 2.26256 2.78764 2.92219 3.17562 3.25179 3.76653 3.78216 3.81931 3.88696 3.96464 4.00598 4.23528 4.26073 4.32333 4.45093 4.49795 4.54850 4.56525 4.59103 4.62391 4.67033 4.72766 4.76469 4.76852 4.80316 4.86255 4.88390 4.91238 5.07379 5.10266 5.14853 5.17933 5.28869 5.31050 5.35466 5.36651 5.42420 5.51563 5.58073 5.85675 6.01044 6.04859 6.42353 6.57204 7.10184 7.33223 7.53875 8.09682 8.66826 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013430 B = 0.003126 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.348142 B = 8955.847254 C = 9973.153955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.055 3.945 3 H 0.040 0.960 4 C 0.175 3.825 5 H 0.100 0.900 6 C -0.128 4.128 7 N -0.596 5.596 8 C 0.647 3.353 9 O -0.578 6.578 10 O -0.374 6.374 11 C 0.124 3.876 12 C -0.173 4.173 13 C -0.135 4.135 14 C -0.180 4.180 15 C 0.127 3.873 16 C 0.026 3.974 17 N -0.492 5.492 18 C 0.045 3.955 19 C 0.409 3.591 20 O -0.623 6.623 21 N -0.569 5.569 22 C -0.332 4.332 23 H 0.073 0.927 24 C -0.009 4.009 25 N -0.917 5.917 26 Si 0.987 3.013 27 H -0.271 1.271 28 H -0.269 1.269 29 H -0.277 1.277 30 H 0.087 0.913 31 H 0.068 0.932 32 H 0.049 0.951 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.032 0.968 36 H 0.064 0.936 37 H 0.090 0.910 38 H 0.064 0.936 39 H 0.059 0.941 40 H 0.103 0.897 41 H 0.073 0.927 42 H 0.061 0.939 43 H 0.093 0.907 44 H 0.045 0.955 45 H 0.094 0.906 46 H 0.098 0.902 47 H 0.096 0.904 48 H 0.031 0.969 49 H 0.118 0.882 50 H 0.113 0.887 51 H 0.396 0.604 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.630 -13.102 14.253 20.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.054 4.054 3 H 0.058 0.942 4 C 0.074 3.926 5 H 0.117 0.883 6 C -0.185 4.185 7 N -0.337 5.337 8 C 0.403 3.597 9 O -0.470 6.470 10 O -0.289 6.289 11 C 0.088 3.912 12 C -0.230 4.230 13 C -0.192 4.192 14 C -0.237 4.237 15 C 0.005 3.995 16 C -0.103 4.103 17 N -0.215 5.215 18 C -0.087 4.087 19 C 0.196 3.804 20 O -0.511 6.511 21 N -0.206 5.206 22 C -0.462 4.462 23 H 0.091 0.909 24 C -0.210 4.210 25 N -0.558 5.558 26 Si 0.811 3.189 27 H -0.197 1.197 28 H -0.194 1.194 29 H -0.202 1.202 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.051 0.949 36 H 0.083 0.917 37 H 0.109 0.891 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.122 0.878 41 H 0.092 0.908 42 H 0.080 0.920 43 H 0.112 0.888 44 H 0.065 0.935 45 H 0.112 0.888 46 H 0.116 0.884 47 H 0.114 0.886 48 H 0.050 0.950 49 H 0.135 0.865 50 H 0.131 0.869 51 H 0.230 0.770 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.783 -13.060 15.031 21.036 hybrid contribution 0.179 2.078 -0.962 2.297 sum 6.962 -10.982 14.069 19.157 Atomic orbital electron populations 1.21897 0.92342 1.03565 1.02053 1.22224 0.96736 0.96758 0.89687 0.94239 1.21400 0.76255 1.00249 0.94739 0.88259 1.22091 1.00263 0.99642 0.96527 1.47256 1.06297 1.64253 1.15853 1.18203 0.81106 0.76898 0.83489 1.90895 1.74500 1.53590 1.27989 1.86305 1.16776 1.80795 1.45016 1.22384 0.90910 0.94198 0.83722 1.22414 1.03911 0.99308 0.97374 1.21875 0.90044 1.03721 1.03559 1.22470 1.03676 0.95137 1.02419 1.21854 0.98412 0.98188 0.81096 1.22644 0.88360 1.00024 0.99302 1.62573 1.06397 1.51452 1.01046 1.22269 1.02340 0.89034 0.95018 1.22158 0.84380 0.91043 0.82778 1.90449 1.45028 1.72244 1.43403 1.42108 1.48276 1.11699 1.18531 1.19578 1.33078 0.89103 1.04447 0.90873 1.25965 0.96445 1.03848 0.94711 1.69659 1.37814 1.39247 1.09038 0.85013 0.78346 0.77381 0.78117 1.19652 1.19372 1.20184 0.89451 0.91323 0.93190 0.91373 0.90426 0.94915 0.91699 0.89138 0.91740 0.92187 0.87823 0.90759 0.91996 0.88836 0.93537 0.88787 0.88356 0.88624 0.95020 0.86472 0.86882 0.76973 0.91248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.75 8.55 71.98 0.62 -3.13 16 2 C 0.06 1.77 1.64 44.99 0.07 1.85 16 3 H 0.04 1.72 5.70 -2.39 -0.01 1.70 16 4 C 0.18 4.96 3.10 44.96 0.14 5.10 16 5 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 6 C -0.13 -3.68 7.56 71.98 0.54 -3.14 16 7 N -0.60 -17.77 3.01 -924.31 -2.78 -20.55 16 8 C 0.65 20.37 7.51 129.79 0.98 21.34 16 9 O -0.58 -19.14 7.60 19.82 0.15 -18.99 16 10 O -0.37 -10.68 8.57 -55.41 -0.47 -11.15 16 11 C 0.12 2.80 1.13 -10.79 -0.01 2.79 16 12 C -0.17 -3.43 8.37 71.98 0.60 -2.83 16 13 C -0.14 -2.18 8.85 71.98 0.64 -1.55 16 14 C -0.18 -4.38 8.37 71.98 0.60 -3.77 16 15 C 0.13 3.30 6.63 86.35 0.57 3.88 16 16 C 0.03 0.80 5.13 86.38 0.44 1.25 16 17 N -0.49 -15.04 4.68 -874.59 -4.09 -19.13 16 18 C 0.04 1.46 5.39 85.56 0.46 1.93 16 19 C 0.41 18.60 7.18 87.66 0.63 19.23 16 20 O -0.62 -32.97 11.25 -3.06 -0.03 -33.00 16 21 N -0.57 -28.54 5.29 -306.98 -1.62 -30.16 16 22 C -0.33 -18.73 9.68 84.04 0.81 -17.91 16 23 H 0.07 4.46 7.16 -2.91 -0.02 4.44 16 24 C -0.01 -0.50 5.50 84.93 0.47 -0.04 16 25 N -0.92 -49.02 13.05 21.66 0.28 -48.74 16 26 Si 0.99 43.09 29.55 68.60 2.03 45.12 16 27 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 28 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 29 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 30 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 31 H 0.07 1.71 6.61 -2.39 -0.02 1.69 16 32 H 0.05 1.46 6.08 -2.38 -0.01 1.44 16 33 H 0.07 1.69 6.39 -2.39 -0.02 1.67 16 34 H 0.08 2.24 6.62 -2.39 -0.02 2.22 16 35 H 0.03 1.14 6.95 -2.39 -0.02 1.13 16 36 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.06 1.62 5.88 -2.39 -0.01 1.61 16 39 H 0.06 1.06 8.14 -2.39 -0.02 1.05 16 40 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.06 1.85 5.88 -2.39 -0.01 1.84 16 43 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.09 2.36 6.97 -2.39 -0.02 2.34 16 46 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 47 H 0.10 2.63 8.11 -2.39 -0.02 2.61 16 48 H 0.03 1.32 5.77 -2.39 -0.01 1.31 16 49 H 0.12 3.40 5.90 -2.39 -0.01 3.39 16 50 H 0.11 3.20 8.14 -2.39 -0.02 3.18 16 51 H 0.40 18.88 7.90 -92.71 -0.73 18.15 16 52 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 Total: -1.00 -68.85 388.68 1.22 -67.62 By element: Atomic # 1 Polarization: 43.81 SS G_CDS: 0.20 Total: 44.01 kcal Atomic # 6 Polarization: 17.42 SS G_CDS: 7.57 Total: 24.99 kcal Atomic # 7 Polarization: -110.38 SS G_CDS: -8.21 Total: -118.59 kcal Atomic # 8 Polarization: -62.79 SS G_CDS: -0.36 Total: -63.15 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -68.85 1.22 -67.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494624674.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.807 kcal (2) G-P(sol) polarization free energy of solvation -68.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds