Wall clock time and date at job start Wed Apr 1 2020 01:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09004 * 109.48702 * 2 1 4 4 C 1.53240 * 109.51403 * 239.93697 * 2 1 3 5 5 H 1.09001 * 109.62644 * 305.90077 * 4 2 1 6 6 C 1.52995 * 109.62932 * 66.48265 * 4 2 1 7 7 N 1.47079 * 108.51810 * 186.19322 * 4 2 1 8 8 C 1.34772 * 120.88107 * 231.20315 * 7 4 2 9 9 O 1.21507 * 120.00450 * 354.42622 * 8 7 4 10 10 O 1.34645 * 119.99955 * 174.42183 * 8 7 4 11 11 C 1.45201 * 116.99894 * 180.02562 * 10 8 7 12 12 C 1.52995 * 109.47212 * 60.00045 * 11 10 8 13 13 C 1.52998 * 109.46932 * 180.02562 * 11 10 8 14 14 C 1.53000 * 109.46895 * 300.00223 * 11 10 8 15 15 C 1.47087 * 118.23718 * 51.18595 * 7 4 2 16 16 C 1.53242 * 108.51722 * 308.81309 * 15 7 4 17 17 N 1.46895 * 109.34296 * 53.83299 * 16 15 7 18 18 C 1.46903 * 111.00115 * 172.74520 * 17 16 15 19 19 C 1.50696 * 109.47250 * 60.52262 * 18 17 16 20 20 O 1.21297 * 119.99713 * 5.57537 * 19 18 17 21 21 N 1.34775 * 120.00302 * 185.56605 * 19 18 17 22 22 C 1.37096 * 120.00247 * 179.97438 * 21 19 18 23 23 H 1.08001 * 120.00217 * 0.02562 * 22 21 19 24 24 C 1.38951 * 120.00050 * 180.02562 * 22 21 19 25 25 N 1.31413 * 120.00088 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00026 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47037 * 90.00129 * 26 24 22 28 28 H 1.48499 * 109.47108 * 210.00155 * 26 24 22 29 29 H 1.48497 * 109.47123 * 330.00663 * 26 24 22 30 30 H 1.09001 * 109.47127 * 296.27162 * 1 2 3 31 31 H 1.09000 * 109.47433 * 56.27195 * 1 2 3 32 32 H 1.09002 * 109.46515 * 176.27090 * 1 2 3 33 33 H 1.09011 * 109.46916 * 67.57373 * 6 4 2 34 34 H 1.09004 * 109.47030 * 187.56905 * 6 4 2 35 35 H 1.09000 * 109.47522 * 307.57600 * 6 4 2 36 36 H 1.09001 * 109.47124 * 59.99886 * 12 11 10 37 37 H 1.09003 * 109.47209 * 179.97438 * 12 11 10 38 38 H 1.09007 * 109.47410 * 299.99883 * 12 11 10 39 39 H 1.08997 * 109.47417 * 59.99982 * 13 11 10 40 40 H 1.09003 * 109.47034 * 180.02562 * 13 11 10 41 41 H 1.09001 * 109.46902 * 299.99806 * 13 11 10 42 42 H 1.08995 * 109.47867 * 59.99926 * 14 11 10 43 43 H 1.08999 * 109.47218 * 180.02562 * 14 11 10 44 44 H 1.09005 * 109.47330 * 300.00039 * 14 11 10 45 45 H 1.09001 * 109.62407 * 189.10450 * 15 7 4 46 46 H 1.08999 * 109.62822 * 68.52144 * 15 7 4 47 47 H 1.09005 * 109.49108 * 293.86681 * 16 15 7 48 48 H 1.09002 * 109.51347 * 173.80511 * 16 15 7 49 49 H 1.08999 * 109.46622 * 180.52436 * 18 17 16 50 50 H 1.09001 * 109.46604 * 300.52627 * 18 17 16 51 51 H 0.97000 * 119.99631 * 0.02562 * 21 19 18 52 52 H 0.96992 * 120.00025 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0420 -0.7236 -1.2501 5 1 1.5968 -1.7170 -1.3062 6 6 1.6717 0.0811 -2.4975 7 7 3.5049 -0.8423 -1.1549 8 6 4.2984 -0.4476 -2.1702 9 8 3.8063 -0.0813 -3.2190 10 8 5.6367 -0.4589 -2.0223 11 6 6.4290 -0.0200 -3.1571 12 6 6.0660 1.4252 -3.5042 13 6 7.9153 -0.1022 -2.8036 14 6 6.1406 -0.9211 -4.3595 15 6 4.0788 -1.4030 0.0778 16 6 3.4866 -0.6526 1.2755 17 7 2.0203 -0.6935 1.1986 18 6 1.4135 -0.1357 2.4147 19 6 1.8386 1.3012 2.5746 20 8 2.4909 1.8409 1.7059 21 7 1.4939 1.9866 3.6826 22 6 1.8811 3.2937 3.8283 23 1 2.4620 3.7743 3.0549 24 6 1.5261 4.0002 4.9709 25 7 0.8198 3.4154 5.9121 26 14 2.0531 5.7814 5.1691 27 1 1.0122 6.6722 4.5959 28 1 2.2278 6.0883 6.6114 29 1 3.3379 5.9996 4.4572 30 1 -0.3633 0.4549 0.9215 31 1 -0.3634 0.5706 -0.8547 32 1 -0.3632 -1.0255 -0.0668 33 1 2.2319 1.0162 -2.5062 34 1 1.9160 -0.4971 -3.3887 35 1 0.6035 0.2977 -2.4864 36 1 6.2714 2.0672 -2.6476 37 1 6.6612 1.7548 -4.3559 38 1 5.0071 1.4834 -3.7562 39 1 8.1737 -1.1319 -2.5566 40 1 8.5102 0.2277 -3.6554 41 1 8.1210 0.5395 -1.9469 42 1 5.0818 -0.8631 -4.6115 43 1 6.7357 -0.5920 -5.2113 44 1 6.3992 -1.9508 -4.1122 45 1 5.1617 -1.2789 0.0669 46 1 3.8294 -2.4617 0.1493 47 1 3.8232 0.3840 1.2578 48 1 3.8156 -1.1260 2.2006 49 1 0.3277 -0.1868 2.3351 50 1 1.7419 -0.7103 3.2808 51 1 0.9725 1.5549 4.3773 52 1 0.5717 3.9087 6.7096 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000494624675.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:20:17 Heat of formation + Delta-G solvation = -89.473952 kcal Electronic energy + Delta-G solvation = -32595.370344 eV Core-core repulsion = 28403.102292 eV Total energy + Delta-G solvation = -4192.268051 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.98788 -39.61365 -38.01480 -36.58226 -34.76712 -34.16290 -33.60757 -33.05449 -31.35470 -28.91418 -28.50061 -27.49579 -27.42813 -26.38751 -24.81531 -23.72997 -22.09488 -21.71389 -20.11698 -19.31112 -19.02097 -17.87449 -17.38863 -16.62218 -16.23970 -15.91465 -15.75202 -15.27199 -14.89579 -14.67809 -14.50083 -14.31221 -13.89027 -13.84038 -13.66397 -13.49992 -13.38068 -12.68293 -12.55282 -12.44680 -12.27290 -12.24072 -11.97469 -11.93409 -11.80825 -11.69939 -11.62600 -11.49809 -11.30136 -11.23068 -11.12846 -10.98706 -10.82150 -10.62486 -10.45933 -10.39024 -10.30861 -10.28811 -9.50714 -9.27770 -9.20923 -8.53296 -8.03330 -7.44366 -6.48824 -3.90162 2.23484 2.98758 3.11904 3.21836 3.27398 3.78879 3.86785 4.11805 4.21762 4.64981 4.69102 4.83234 4.89917 5.03718 5.10188 5.16027 5.23714 5.35216 5.41543 5.44208 5.45735 5.52826 5.56464 5.57931 5.68896 5.69399 5.77918 5.79260 5.86347 5.87778 5.90536 5.95774 6.02137 6.10298 6.18310 6.20212 6.26169 6.31940 6.34505 6.47825 6.53004 6.56678 6.70698 6.80604 7.25381 7.39151 7.48022 7.60387 7.97656 8.49860 8.52326 9.09850 9.45687 9.96319 10.67686 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013442 B = 0.003125 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.511202 B = 8958.454136 C = 9970.545918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.052 3.948 3 H 0.092 0.908 4 C 0.173 3.827 5 H 0.075 0.925 6 C -0.140 4.140 7 N -0.588 5.588 8 C 0.655 3.345 9 O -0.567 6.567 10 O -0.366 6.366 11 C 0.137 3.863 12 C -0.183 4.183 13 C -0.140 4.140 14 C -0.181 4.181 15 C 0.121 3.879 16 C 0.024 3.976 17 N -0.510 5.510 18 C 0.036 3.964 19 C 0.406 3.594 20 O -0.593 6.593 21 N -0.556 5.556 22 C -0.302 4.302 23 H 0.102 0.898 24 C 0.025 3.975 25 N -0.898 5.898 26 Si 0.929 3.071 27 H -0.277 1.277 28 H -0.283 1.283 29 H -0.270 1.270 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.051 0.949 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.088 0.912 39 H 0.065 0.935 40 H 0.077 0.923 41 H 0.067 0.933 42 H 0.088 0.912 43 H 0.066 0.934 44 H 0.057 0.943 45 H 0.089 0.911 46 H 0.070 0.930 47 H 0.079 0.921 48 H 0.078 0.922 49 H 0.096 0.904 50 H 0.088 0.912 51 H 0.393 0.607 52 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.446 -11.299 -13.821 18.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.057 4.057 3 H 0.110 0.890 4 C 0.071 3.929 5 H 0.093 0.907 6 C -0.197 4.197 7 N -0.328 5.328 8 C 0.410 3.590 9 O -0.458 6.458 10 O -0.281 6.281 11 C 0.100 3.900 12 C -0.240 4.240 13 C -0.198 4.198 14 C -0.238 4.238 15 C -0.002 4.002 16 C -0.105 4.105 17 N -0.233 5.233 18 C -0.095 4.095 19 C 0.192 3.808 20 O -0.480 6.480 21 N -0.191 5.191 22 C -0.432 4.432 23 H 0.120 0.880 24 C -0.177 4.177 25 N -0.539 5.539 26 Si 0.756 3.244 27 H -0.203 1.203 28 H -0.208 1.208 29 H -0.194 1.194 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.107 0.893 39 H 0.084 0.916 40 H 0.096 0.904 41 H 0.086 0.914 42 H 0.107 0.893 43 H 0.085 0.915 44 H 0.076 0.924 45 H 0.108 0.892 46 H 0.089 0.911 47 H 0.097 0.903 48 H 0.096 0.904 49 H 0.114 0.886 50 H 0.106 0.894 51 H 0.226 0.774 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.601 -11.237 -14.596 19.568 hybrid contribution 0.186 1.520 0.930 1.792 sum 6.787 -9.717 -13.666 18.090 Atomic orbital electron populations 1.21918 0.94212 1.01783 1.02375 1.22320 0.95239 0.99404 0.88719 0.89023 1.21379 0.76164 0.99491 0.95867 0.90669 1.22236 0.99770 1.01306 0.96419 1.47107 1.06038 1.64178 1.15514 1.18026 0.80572 0.76946 0.83417 1.90899 1.74139 1.53258 1.27497 1.86304 1.17344 1.80793 1.43643 1.21984 0.89753 0.94539 0.83754 1.22511 1.04979 0.94556 1.01998 1.21851 0.92006 1.03166 1.02744 1.22497 1.05094 0.99078 0.97130 1.21819 0.98287 0.97360 0.82757 1.22664 0.88368 1.02261 0.97189 1.62457 1.06432 1.52844 1.01553 1.22154 1.00998 0.92820 0.93555 1.21071 0.86192 0.89232 0.84334 1.90424 1.44455 1.70859 1.42255 1.42049 1.47346 1.12054 1.17645 1.19700 1.31929 0.87201 1.04352 0.88030 1.25277 0.96698 1.00427 0.95342 1.69605 1.37564 1.37875 1.08844 0.85876 0.79214 0.81925 0.77404 1.20340 1.20833 1.19440 0.91820 0.92081 0.92300 0.91612 0.90407 0.93072 0.92110 0.91503 0.89277 0.91633 0.90397 0.91426 0.89318 0.91486 0.92441 0.89220 0.91137 0.90328 0.90366 0.88624 0.89375 0.77397 0.91747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 8.57 37.16 0.32 -1.73 16 2 C 0.05 0.84 1.63 -67.59 -0.11 0.73 16 3 H 0.09 1.90 5.67 -51.93 -0.29 1.61 16 4 C 0.17 2.53 3.10 -67.49 -0.21 2.32 16 5 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 6 C -0.14 -2.02 7.56 37.16 0.28 -1.73 16 7 N -0.59 -8.87 3.01 -170.67 -0.51 -9.39 16 8 C 0.65 10.18 7.51 54.05 0.41 10.59 16 9 O -0.57 -9.14 7.60 -19.28 -0.15 -9.29 16 10 O -0.37 -5.22 8.57 -40.34 -0.35 -5.57 16 11 C 0.14 1.59 1.13 -90.62 -0.10 1.49 16 12 C -0.18 -2.21 8.37 37.16 0.31 -1.89 16 13 C -0.14 -1.26 8.85 37.16 0.33 -0.93 16 14 C -0.18 -1.91 8.37 37.16 0.31 -1.60 16 15 C 0.12 1.64 6.63 -3.60 -0.02 1.62 16 16 C 0.02 0.38 5.14 -3.70 -0.02 0.36 16 17 N -0.51 -8.11 4.68 -227.77 -1.07 -9.18 16 18 C 0.04 0.61 5.38 -4.98 -0.03 0.59 16 19 C 0.41 9.02 7.18 -10.99 -0.08 8.94 16 20 O -0.59 -14.92 11.25 5.54 0.06 -14.86 16 21 N -0.56 -13.58 5.29 -10.96 -0.06 -13.64 16 22 C -0.30 -8.23 9.68 -14.93 -0.14 -8.37 16 23 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 24 C 0.02 0.65 5.50 -17.47 -0.10 0.56 16 25 N -0.90 -23.99 13.05 55.50 0.72 -23.26 16 26 Si 0.93 20.82 29.55 -169.99 -5.02 15.79 16 27 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 28 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 29 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 30 H 0.06 0.97 6.02 -51.93 -0.31 0.66 16 31 H 0.06 0.80 6.66 -51.93 -0.35 0.46 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 1.10 6.94 -51.92 -0.36 0.74 16 34 H 0.08 1.13 6.62 -51.93 -0.34 0.79 16 35 H 0.05 0.65 6.41 -51.93 -0.33 0.32 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.09 1.27 5.88 -51.93 -0.31 0.97 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.09 1.13 5.88 -51.93 -0.31 0.82 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.09 1.16 6.97 -51.93 -0.36 0.80 16 46 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 47 H 0.08 1.58 5.80 -51.93 -0.30 1.28 16 48 H 0.08 1.13 8.10 -51.93 -0.42 0.71 16 49 H 0.10 1.48 5.90 -51.93 -0.31 1.18 16 50 H 0.09 1.35 8.13 -51.93 -0.42 0.93 16 51 H 0.39 9.23 7.90 -40.82 -0.32 8.91 16 52 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 388.69 15.07 5.86 5.86 Total: -1.00 -30.06 388.69 -7.84 -37.90 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: -8.47 Total: 14.70 kcal Atomic # 6 Polarization: 9.78 SS G_CDS: 1.14 Total: 10.93 kcal Atomic # 7 Polarization: -54.55 SS G_CDS: -0.91 Total: -55.46 kcal Atomic # 8 Polarization: -29.29 SS G_CDS: -0.43 Total: -29.72 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.06 -7.84 -37.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494624675.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.573 kcal (2) G-P(sol) polarization free energy of solvation -30.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds