Wall clock time and date at job start Wed Apr 1 2020 01:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09004 * 109.48702 * 2 1 4 4 C 1.53240 * 109.51403 * 239.93697 * 2 1 3 5 5 H 1.09001 * 109.62644 * 305.90077 * 4 2 1 6 6 C 1.52995 * 109.62932 * 66.48265 * 4 2 1 7 7 N 1.47079 * 108.51810 * 186.19322 * 4 2 1 8 8 C 1.34772 * 120.88107 * 231.20315 * 7 4 2 9 9 O 1.21507 * 120.00450 * 354.42622 * 8 7 4 10 10 O 1.34645 * 119.99955 * 174.42183 * 8 7 4 11 11 C 1.45201 * 116.99894 * 180.02562 * 10 8 7 12 12 C 1.52995 * 109.47212 * 60.00045 * 11 10 8 13 13 C 1.52998 * 109.46932 * 180.02562 * 11 10 8 14 14 C 1.53000 * 109.46895 * 300.00223 * 11 10 8 15 15 C 1.47087 * 118.23718 * 51.18595 * 7 4 2 16 16 C 1.53242 * 108.51722 * 308.81309 * 15 7 4 17 17 N 1.46895 * 109.34296 * 53.83299 * 16 15 7 18 18 C 1.46903 * 111.00115 * 172.74520 * 17 16 15 19 19 C 1.50696 * 109.47250 * 60.52262 * 18 17 16 20 20 O 1.21297 * 119.99713 * 5.57537 * 19 18 17 21 21 N 1.34775 * 120.00302 * 185.56605 * 19 18 17 22 22 C 1.37096 * 120.00247 * 179.97438 * 21 19 18 23 23 H 1.08001 * 120.00217 * 0.02562 * 22 21 19 24 24 C 1.38951 * 120.00050 * 180.02562 * 22 21 19 25 25 N 1.31413 * 120.00088 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00026 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47037 * 90.00129 * 26 24 22 28 28 H 1.48499 * 109.47108 * 210.00155 * 26 24 22 29 29 H 1.48497 * 109.47123 * 330.00663 * 26 24 22 30 30 H 1.09001 * 109.47127 * 296.27162 * 1 2 3 31 31 H 1.09000 * 109.47433 * 56.27195 * 1 2 3 32 32 H 1.09002 * 109.46515 * 176.27090 * 1 2 3 33 33 H 1.09011 * 109.46916 * 67.57373 * 6 4 2 34 34 H 1.09004 * 109.47030 * 187.56905 * 6 4 2 35 35 H 1.09000 * 109.47522 * 307.57600 * 6 4 2 36 36 H 1.09001 * 109.47124 * 59.99886 * 12 11 10 37 37 H 1.09003 * 109.47209 * 179.97438 * 12 11 10 38 38 H 1.09007 * 109.47410 * 299.99883 * 12 11 10 39 39 H 1.08997 * 109.47417 * 59.99982 * 13 11 10 40 40 H 1.09003 * 109.47034 * 180.02562 * 13 11 10 41 41 H 1.09001 * 109.46902 * 299.99806 * 13 11 10 42 42 H 1.08995 * 109.47867 * 59.99926 * 14 11 10 43 43 H 1.08999 * 109.47218 * 180.02562 * 14 11 10 44 44 H 1.09005 * 109.47330 * 300.00039 * 14 11 10 45 45 H 1.09001 * 109.62407 * 189.10450 * 15 7 4 46 46 H 1.08999 * 109.62822 * 68.52144 * 15 7 4 47 47 H 1.09005 * 109.49108 * 293.86681 * 16 15 7 48 48 H 1.09002 * 109.51347 * 173.80511 * 16 15 7 49 49 H 1.08999 * 109.46622 * 180.52436 * 18 17 16 50 50 H 1.09001 * 109.46604 * 300.52627 * 18 17 16 51 51 H 0.97000 * 119.99631 * 0.02562 * 21 19 18 52 52 H 0.96992 * 120.00025 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0420 -0.7236 -1.2501 5 1 1.5968 -1.7170 -1.3062 6 6 1.6717 0.0811 -2.4975 7 7 3.5049 -0.8423 -1.1549 8 6 4.2984 -0.4476 -2.1702 9 8 3.8063 -0.0813 -3.2190 10 8 5.6367 -0.4589 -2.0223 11 6 6.4290 -0.0200 -3.1571 12 6 6.0660 1.4252 -3.5042 13 6 7.9153 -0.1022 -2.8036 14 6 6.1406 -0.9211 -4.3595 15 6 4.0788 -1.4030 0.0778 16 6 3.4866 -0.6526 1.2755 17 7 2.0203 -0.6935 1.1986 18 6 1.4135 -0.1357 2.4147 19 6 1.8386 1.3012 2.5746 20 8 2.4909 1.8409 1.7059 21 7 1.4939 1.9866 3.6826 22 6 1.8811 3.2937 3.8283 23 1 2.4620 3.7743 3.0549 24 6 1.5261 4.0002 4.9709 25 7 0.8198 3.4154 5.9121 26 14 2.0531 5.7814 5.1691 27 1 1.0122 6.6722 4.5959 28 1 2.2278 6.0883 6.6114 29 1 3.3379 5.9996 4.4572 30 1 -0.3633 0.4549 0.9215 31 1 -0.3634 0.5706 -0.8547 32 1 -0.3632 -1.0255 -0.0668 33 1 2.2319 1.0162 -2.5062 34 1 1.9160 -0.4971 -3.3887 35 1 0.6035 0.2977 -2.4864 36 1 6.2714 2.0672 -2.6476 37 1 6.6612 1.7548 -4.3559 38 1 5.0071 1.4834 -3.7562 39 1 8.1737 -1.1319 -2.5566 40 1 8.5102 0.2277 -3.6554 41 1 8.1210 0.5395 -1.9469 42 1 5.0818 -0.8631 -4.6115 43 1 6.7357 -0.5920 -5.2113 44 1 6.3992 -1.9508 -4.1122 45 1 5.1617 -1.2789 0.0669 46 1 3.8294 -2.4617 0.1493 47 1 3.8232 0.3840 1.2578 48 1 3.8156 -1.1260 2.2006 49 1 0.3277 -0.1868 2.3351 50 1 1.7419 -0.7103 3.2808 51 1 0.9725 1.5549 4.3773 52 1 0.5717 3.9087 6.7096 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000494624675.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:20:16 Heat of formation + Delta-G solvation = -110.333023 kcal Electronic energy + Delta-G solvation = -32596.274861 eV Core-core repulsion = 28403.102292 eV Total energy + Delta-G solvation = -4193.172568 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.15720 -41.02913 -39.46193 -37.87358 -36.19575 -35.67012 -34.94380 -34.22134 -33.32665 -30.28335 -29.70643 -28.35732 -28.27422 -27.85715 -26.45098 -25.09370 -23.28034 -22.96071 -21.44298 -20.85557 -20.31111 -19.75670 -18.57836 -17.79434 -17.73325 -17.17781 -17.05942 -16.55147 -16.43348 -16.24383 -15.68460 -15.53955 -15.50635 -15.32799 -14.96662 -14.70974 -14.49239 -13.99674 -13.76952 -13.59311 -13.51042 -13.31319 -13.22557 -13.05462 -12.98540 -12.91544 -12.86575 -12.72867 -12.66702 -12.46692 -12.41927 -12.37448 -12.18562 -12.04658 -11.99595 -11.86279 -11.79223 -11.35241 -11.31772 -10.98620 -10.37664 -10.00800 -9.74487 -9.01287 -8.48482 -5.98086 1.15307 1.32931 1.37609 1.49432 1.80773 2.00868 2.26236 2.78731 2.92179 3.17562 3.25149 3.76738 3.78220 3.81933 3.88742 3.96512 4.00646 4.23647 4.26121 4.32350 4.44983 4.49751 4.54726 4.56480 4.59164 4.62395 4.66953 4.72821 4.76471 4.77241 4.80267 4.86294 4.88378 4.90975 5.07420 5.10340 5.14637 5.17910 5.28866 5.31130 5.35450 5.36669 5.42463 5.51546 5.58075 5.85676 6.01040 6.04883 6.42395 6.57218 7.10188 7.33257 7.53853 8.09683 8.66843 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013442 B = 0.003125 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.511202 B = 8958.454136 C = 9970.545918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.055 3.945 3 H 0.040 0.960 4 C 0.175 3.825 5 H 0.100 0.900 6 C -0.127 4.127 7 N -0.597 5.597 8 C 0.647 3.353 9 O -0.578 6.578 10 O -0.374 6.374 11 C 0.124 3.876 12 C -0.180 4.180 13 C -0.135 4.135 14 C -0.173 4.173 15 C 0.127 3.873 16 C 0.026 3.974 17 N -0.492 5.492 18 C 0.045 3.955 19 C 0.409 3.591 20 O -0.623 6.623 21 N -0.569 5.569 22 C -0.332 4.332 23 H 0.073 0.927 24 C -0.009 4.009 25 N -0.917 5.917 26 Si 0.987 3.013 27 H -0.272 1.272 28 H -0.269 1.269 29 H -0.276 1.276 30 H 0.050 0.950 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.032 0.968 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.045 0.955 37 H 0.093 0.907 38 H 0.061 0.939 39 H 0.074 0.926 40 H 0.103 0.897 41 H 0.059 0.941 42 H 0.064 0.936 43 H 0.090 0.910 44 H 0.064 0.936 45 H 0.094 0.906 46 H 0.099 0.901 47 H 0.031 0.969 48 H 0.096 0.904 49 H 0.118 0.882 50 H 0.113 0.887 51 H 0.396 0.604 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.688 -13.124 -14.216 20.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.055 4.055 3 H 0.058 0.942 4 C 0.074 3.926 5 H 0.117 0.883 6 C -0.185 4.185 7 N -0.337 5.337 8 C 0.403 3.597 9 O -0.470 6.470 10 O -0.289 6.289 11 C 0.088 3.912 12 C -0.237 4.237 13 C -0.192 4.192 14 C -0.230 4.230 15 C 0.005 3.995 16 C -0.103 4.103 17 N -0.215 5.215 18 C -0.087 4.087 19 C 0.196 3.804 20 O -0.511 6.511 21 N -0.206 5.206 22 C -0.462 4.462 23 H 0.091 0.909 24 C -0.210 4.210 25 N -0.558 5.558 26 Si 0.811 3.189 27 H -0.197 1.197 28 H -0.193 1.193 29 H -0.201 1.201 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.105 0.895 33 H 0.051 0.949 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.065 0.935 37 H 0.112 0.888 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.122 0.878 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.109 0.891 44 H 0.083 0.917 45 H 0.112 0.888 46 H 0.117 0.883 47 H 0.049 0.951 48 H 0.114 0.886 49 H 0.135 0.865 50 H 0.131 0.869 51 H 0.230 0.770 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.844 -13.082 -14.992 21.041 hybrid contribution 0.163 2.085 0.955 2.299 sum 7.007 -10.997 -14.036 19.159 Atomic orbital electron populations 1.21897 0.92362 1.03550 1.02038 1.22236 0.96725 0.96821 0.89670 0.94156 1.21410 0.76241 1.00235 0.94747 0.88271 1.22086 1.00255 0.99641 0.96510 1.47265 1.06301 1.64229 1.15875 1.18206 0.81106 0.76902 0.83489 1.90896 1.74511 1.53545 1.28023 1.86307 1.16773 1.80763 1.45053 1.22378 0.90908 0.94183 0.83740 1.22471 1.03678 0.95133 1.02418 1.21874 0.90045 1.03720 1.03561 1.22415 1.03903 0.99325 0.97368 1.21861 0.98407 0.98203 0.81073 1.22643 0.88362 0.99978 0.99338 1.62570 1.06374 1.51479 1.01051 1.22271 1.02379 0.88994 0.95022 1.22159 0.84315 0.91085 0.82799 1.90451 1.45303 1.72283 1.43088 1.42108 1.48348 1.11515 1.18642 1.19577 1.33193 0.88917 1.04515 0.90872 1.25964 0.96449 1.03864 0.94690 1.69656 1.37867 1.39133 1.09104 0.85013 0.78475 0.77533 0.77838 1.19736 1.19337 1.20138 0.93145 0.91398 0.89467 0.94898 0.90434 0.91390 0.93541 0.88839 0.91993 0.90747 0.87825 0.92197 0.91738 0.89142 0.91706 0.88750 0.88335 0.95115 0.88594 0.86456 0.86884 0.76974 0.91246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.75 8.57 71.98 0.62 -3.14 16 2 C 0.05 1.76 1.63 45.00 0.07 1.83 16 3 H 0.04 1.75 5.67 -2.38 -0.01 1.74 16 4 C 0.18 4.96 3.10 44.96 0.14 5.10 16 5 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 6 C -0.13 -3.68 7.56 71.98 0.54 -3.13 16 7 N -0.60 -17.77 3.01 -924.28 -2.78 -20.55 16 8 C 0.65 20.36 7.51 129.79 0.98 21.34 16 9 O -0.58 -19.15 7.60 19.82 0.15 -19.00 16 10 O -0.37 -10.68 8.57 -55.55 -0.48 -11.15 16 11 C 0.12 2.80 1.13 -10.80 -0.01 2.79 16 12 C -0.18 -4.38 8.37 71.98 0.60 -3.78 16 13 C -0.14 -2.18 8.85 71.98 0.64 -1.55 16 14 C -0.17 -3.43 8.37 71.98 0.60 -2.83 16 15 C 0.13 3.30 6.63 86.35 0.57 3.87 16 16 C 0.03 0.80 5.14 86.39 0.44 1.25 16 17 N -0.49 -15.04 4.68 -874.55 -4.09 -19.13 16 18 C 0.04 1.46 5.38 85.56 0.46 1.92 16 19 C 0.41 18.59 7.18 87.66 0.63 19.22 16 20 O -0.62 -32.97 11.25 -3.08 -0.03 -33.00 16 21 N -0.57 -28.53 5.29 -306.98 -1.62 -30.16 16 22 C -0.33 -18.72 9.68 84.04 0.81 -17.91 16 23 H 0.07 4.46 7.16 -2.91 -0.02 4.44 16 24 C -0.01 -0.50 5.50 84.93 0.47 -0.04 16 25 N -0.92 -49.02 13.05 21.66 0.28 -48.74 16 26 Si 0.99 43.09 29.55 68.60 2.03 45.12 16 27 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 28 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 29 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 30 H 0.05 1.47 6.02 -2.39 -0.01 1.46 16 31 H 0.07 1.70 6.66 -2.39 -0.02 1.68 16 32 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.03 1.15 6.94 -2.38 -0.02 1.13 16 34 H 0.08 2.24 6.62 -2.38 -0.02 2.22 16 35 H 0.07 1.69 6.41 -2.39 -0.02 1.67 16 36 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.06 1.86 5.88 -2.38 -0.01 1.84 16 39 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.06 1.62 5.88 -2.39 -0.01 1.61 16 43 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 45 H 0.09 2.36 6.97 -2.39 -0.02 2.35 16 46 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 47 H 0.03 1.28 5.80 -2.38 -0.01 1.27 16 48 H 0.10 2.63 8.10 -2.39 -0.02 2.61 16 49 H 0.12 3.41 5.90 -2.39 -0.01 3.39 16 50 H 0.11 3.20 8.13 -2.39 -0.02 3.18 16 51 H 0.40 18.88 7.90 -92.71 -0.73 18.15 16 52 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 Total: -1.00 -68.84 388.69 1.22 -67.62 By element: Atomic # 1 Polarization: 43.82 SS G_CDS: 0.20 Total: 44.02 kcal Atomic # 6 Polarization: 17.40 SS G_CDS: 7.57 Total: 24.97 kcal Atomic # 7 Polarization: -110.37 SS G_CDS: -8.21 Total: -118.58 kcal Atomic # 8 Polarization: -62.79 SS G_CDS: -0.36 Total: -63.15 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -68.84 1.22 -67.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000494624675.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.712 kcal (2) G-P(sol) polarization free energy of solvation -68.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds