Wall clock time and date at job start Wed Apr 1 2020 01:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.61115 * 2 1 4 4 C 1.53368 * 109.61137 * 239.65584 * 2 1 3 5 5 N 1.47364 * 108.43083 * 289.54236 * 4 2 1 6 6 C 1.34770 * 120.51633 * 124.86686 * 5 4 2 7 7 O 1.21589 * 119.99915 * 174.91804 * 6 5 4 8 8 N 1.34776 * 120.00388 * 354.92000 * 6 5 4 9 9 C 1.46499 * 120.00398 * 185.06561 * 8 6 5 10 10 C 1.53001 * 109.47387 * 179.97438 * 9 8 6 11 11 C 1.50697 * 109.47153 * 180.02562 * 10 9 8 12 12 H 1.07999 * 120.00082 * 359.97438 * 11 10 9 13 13 C 1.37873 * 119.99950 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00240 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 120.00241 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.47010 * 90.00075 * 15 13 11 17 17 H 1.48498 * 109.47529 * 210.00364 * 15 13 11 18 18 H 1.48505 * 109.47129 * 330.00393 * 15 13 11 19 19 C 1.46966 * 118.88552 * 304.84566 * 5 4 2 20 20 C 1.53367 * 108.63457 * 55.23781 * 19 5 4 21 21 N 1.46964 * 108.63742 * 310.57212 * 20 19 5 22 22 C 1.34776 * 120.59644 * 235.20778 * 21 20 19 23 23 O 1.21509 * 119.99914 * 180.02562 * 22 21 20 24 24 O 1.34636 * 120.00000 * 0.02562 * 22 21 20 25 25 C 1.45199 * 117.00271 * 179.97438 * 24 22 21 26 26 C 1.53006 * 109.46828 * 59.99793 * 25 24 22 27 27 C 1.52996 * 109.47445 * 179.97438 * 25 24 22 28 28 C 1.53001 * 109.47084 * 300.00118 * 25 24 22 29 29 H 1.09003 * 109.46965 * 300.00199 * 1 2 3 30 30 H 1.09002 * 109.46861 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47012 * 60.00521 * 1 2 3 32 32 H 1.09000 * 109.61092 * 49.42485 * 4 2 1 33 33 H 1.09004 * 109.61233 * 169.93481 * 4 2 1 34 34 H 0.97003 * 119.99706 * 5.06255 * 8 6 5 35 35 H 1.09000 * 109.47016 * 300.00120 * 9 8 6 36 36 H 1.09001 * 109.47330 * 59.99891 * 9 8 6 37 37 H 1.09000 * 109.47169 * 300.00060 * 10 9 8 38 38 H 1.09001 * 109.46947 * 59.99691 * 10 9 8 39 39 H 0.96995 * 120.00248 * 180.02562 * 14 13 11 40 40 H 1.09000 * 109.60931 * 295.49163 * 19 5 4 41 41 H 1.09000 * 109.60520 * 174.98021 * 19 5 4 42 42 H 1.08997 * 109.60799 * 190.82965 * 20 19 5 43 43 H 1.09000 * 109.75221 * 70.40350 * 20 19 5 44 44 H 1.08994 * 109.47479 * 59.99958 * 26 25 24 45 45 H 1.09001 * 109.46930 * 180.02562 * 26 25 24 46 46 H 1.08999 * 109.47214 * 299.99701 * 26 25 24 47 47 H 1.08998 * 109.46636 * 60.00309 * 27 25 24 48 48 H 1.08997 * 109.47379 * 180.02562 * 27 25 24 49 49 H 1.09003 * 109.47359 * 300.00485 * 27 25 24 50 50 H 1.08994 * 109.47249 * 59.99658 * 28 25 24 51 51 H 1.09003 * 109.46734 * 179.97438 * 28 25 24 52 52 H 1.08998 * 109.46936 * 299.99654 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8958 1.0268 0.0000 4 6 2.0447 -0.7299 -1.2468 5 7 1.7606 -2.1679 -1.0954 6 6 1.0604 -2.8300 -2.0376 7 8 0.9104 -4.0334 -1.9499 8 7 0.5266 -2.1583 -3.0770 9 6 -0.3267 -2.8578 -4.0407 10 6 -0.7989 -1.8734 -5.1125 11 6 -1.6771 -2.5928 -6.1035 12 1 -1.8781 -3.6469 -5.9813 13 6 -2.2233 -1.9057 -7.1667 14 7 -2.9902 -2.5334 -8.0313 15 14 -1.8751 -0.0826 -7.3785 16 1 -0.6576 0.0955 -8.2098 17 1 -3.0306 0.5676 -8.0473 18 1 -1.6604 0.5383 -6.0467 19 6 2.2538 -2.8671 0.0995 20 6 1.7390 -2.1335 1.3440 21 7 2.0232 -0.6993 1.1949 22 6 2.7232 -0.0370 2.1372 23 8 2.9515 1.1489 2.0031 24 8 3.1694 -0.6895 3.2271 25 6 3.9167 0.0869 4.2003 26 6 3.0377 1.2211 4.7312 27 6 4.3370 -0.8178 5.3603 28 6 5.1623 0.6758 3.5349 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 -0.8900 32 1 1.5384 -0.3441 -2.1316 33 1 3.1199 -0.5777 -1.3420 34 1 0.7074 -1.2117 -3.1869 35 1 0.2392 -3.6626 -4.5100 36 1 -1.1915 -3.2748 -3.5247 37 1 -1.3649 -1.0689 -4.6430 38 1 0.0657 -1.4560 -5.6287 39 1 -3.3741 -2.0500 -8.7795 40 1 3.3438 -2.8670 0.0995 41 1 1.8855 -3.8930 0.1010 42 1 2.2454 -2.5165 2.2300 43 1 0.6642 -2.2851 1.4428 44 1 2.1503 0.8017 5.2052 45 1 3.5988 1.8042 5.4615 46 1 2.7380 1.8658 3.9050 47 1 4.9631 -1.6260 4.9823 48 1 4.8976 -0.2349 6.0910 49 1 3.4494 -1.2370 5.8342 50 1 4.8625 1.3204 2.7087 51 1 5.7230 1.2590 4.2654 52 1 5.7885 -0.1322 3.1566 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495500858.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:35:25 Heat of formation + Delta-G solvation = -99.395077 kcal Electronic energy + Delta-G solvation = -31319.363207 eV Core-core repulsion = 27126.664944 eV Total energy + Delta-G solvation = -4192.698264 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.33641 -40.24297 -38.45578 -36.76778 -35.12208 -34.73660 -33.88932 -32.98592 -32.45664 -30.24195 -28.80645 -27.78882 -27.73897 -26.69029 -24.98112 -23.73899 -23.26253 -21.02523 -20.89099 -20.17859 -19.02866 -18.61203 -17.37885 -16.96889 -16.85663 -16.53232 -16.02304 -15.85237 -15.60979 -14.94429 -14.78551 -14.44978 -14.40108 -14.09087 -13.97947 -13.80468 -13.74859 -13.43961 -13.05861 -12.85737 -12.63585 -12.54859 -12.41874 -12.34537 -12.27024 -12.07474 -11.94689 -11.80356 -11.69591 -11.60445 -11.43823 -11.22495 -11.18226 -10.71534 -10.41359 -10.30321 -10.25112 -9.98429 -9.78405 -9.50322 -9.33707 -8.74007 -8.61986 -8.31160 -6.11520 -4.11657 1.72817 2.52972 2.72284 3.24522 3.31982 3.33119 3.39825 3.44412 4.01960 4.33343 4.36883 4.37466 4.38596 4.52369 4.55541 4.69339 4.75382 4.97502 5.06545 5.08715 5.14738 5.16053 5.19576 5.21277 5.31001 5.32293 5.39687 5.41270 5.48248 5.56790 5.60985 5.61834 5.65810 5.92032 5.93199 5.95965 6.01030 6.13121 6.15894 6.22743 6.36248 6.56375 6.76937 6.90498 7.05356 7.20730 7.23452 7.66422 8.02403 8.14761 8.44115 8.80783 8.93201 9.48449 11.01458 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.023406 B = 0.002227 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.003866 B =12568.446184 C =13304.424210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.140 3.860 3 H 0.114 0.886 4 C 0.103 3.897 5 N -0.635 5.635 6 C 0.705 3.295 7 O -0.590 6.590 8 N -0.741 5.741 9 C 0.147 3.853 10 C -0.021 4.021 11 C -0.522 4.522 12 H 0.076 0.924 13 C 0.069 3.931 14 N -0.898 5.898 15 Si 0.882 3.118 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.266 1.266 19 C 0.119 3.881 20 C 0.096 3.904 21 N -0.589 5.589 22 C 0.656 3.344 23 O -0.569 6.569 24 O -0.362 6.362 25 C 0.136 3.864 26 C -0.183 4.183 27 C -0.141 4.141 28 C -0.183 4.183 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.075 0.925 34 H 0.390 0.610 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.021 0.979 38 H 0.017 0.983 39 H 0.265 0.735 40 H 0.067 0.933 41 H 0.108 0.892 42 H 0.102 0.898 43 H 0.077 0.923 44 H 0.059 0.941 45 H 0.069 0.931 46 H 0.087 0.913 47 H 0.067 0.933 48 H 0.080 0.920 49 H 0.066 0.934 50 H 0.087 0.913 51 H 0.069 0.931 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.527 7.832 27.264 32.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.037 3.963 3 H 0.132 0.868 4 C -0.021 4.021 5 N -0.374 5.374 6 C 0.407 3.593 7 O -0.468 6.468 8 N -0.397 5.397 9 C 0.025 3.975 10 C -0.059 4.059 11 C -0.560 4.560 12 H 0.094 0.906 13 C -0.133 4.133 14 N -0.536 5.536 15 Si 0.710 3.290 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.191 1.191 19 C -0.006 4.006 20 C -0.027 4.027 21 N -0.329 5.329 22 C 0.411 3.589 23 O -0.459 6.459 24 O -0.277 6.277 25 C 0.099 3.901 26 C -0.240 4.240 27 C -0.198 4.198 28 C -0.240 4.240 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.113 0.887 33 H 0.093 0.907 34 H 0.225 0.775 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.039 0.961 38 H 0.035 0.965 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.126 0.874 42 H 0.120 0.880 43 H 0.095 0.905 44 H 0.078 0.922 45 H 0.088 0.912 46 H 0.106 0.894 47 H 0.086 0.914 48 H 0.098 0.902 49 H 0.085 0.915 50 H 0.106 0.894 51 H 0.088 0.912 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 15.376 7.312 27.166 32.061 hybrid contribution 0.207 1.491 -0.289 1.533 sum 15.584 8.803 26.877 32.292 Atomic orbital electron populations 1.22115 0.93718 1.03245 1.02931 1.21641 0.95002 0.97357 0.82339 0.86804 1.22128 1.01344 0.81013 0.97652 1.47266 1.58863 1.08997 1.22262 1.15904 0.78350 0.85154 0.79906 1.90902 1.65399 1.12257 1.78214 1.45700 1.53484 1.12937 1.27556 1.21397 0.92034 0.95662 0.88416 1.19792 0.96582 0.95508 0.94025 1.20902 1.29082 0.97964 1.08060 0.90585 1.25004 0.94554 0.98307 0.95466 1.69902 1.32826 1.36569 1.14325 0.86753 0.78012 0.85682 0.78601 1.20250 1.21301 1.19096 1.21775 0.98700 0.97682 0.82405 1.22200 1.02074 0.79265 0.99198 1.46978 1.55380 1.10260 1.20331 1.17942 0.77615 0.83528 0.79834 1.90887 1.61753 1.14262 1.78980 1.86291 1.67841 1.43176 1.30394 1.22078 0.90624 0.91062 0.86328 1.22512 0.99876 0.98718 1.02915 1.21859 1.02233 0.99815 0.95877 1.22509 0.96494 1.02127 1.02871 0.92058 0.91665 0.90574 0.88672 0.90670 0.77466 0.92046 0.92149 0.96070 0.96506 0.92557 0.91432 0.87392 0.87995 0.90477 0.92204 0.91177 0.89386 0.91415 0.90155 0.91451 0.89387 0.91182 0.92164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 9.13 37.16 0.34 -1.18 16 2 C 0.14 1.30 3.22 -67.49 -0.22 1.08 16 3 H 0.11 1.08 6.99 -51.93 -0.36 0.72 16 4 C 0.10 0.98 5.99 -3.38 -0.02 0.96 16 5 N -0.63 -7.61 2.60 -177.89 -0.46 -8.08 16 6 C 0.71 11.43 8.29 -86.93 -0.72 10.71 16 7 O -0.59 -11.86 15.78 5.29 0.08 -11.78 16 8 N -0.74 -11.98 5.47 -65.23 -0.36 -12.34 16 9 C 0.15 2.96 5.62 -4.04 -0.02 2.94 16 10 C -0.02 -0.48 4.16 -27.88 -0.12 -0.59 16 11 C -0.52 -14.43 9.66 -34.44 -0.33 -14.76 16 12 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 13 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 14 N -0.90 -27.13 13.96 55.43 0.77 -26.35 16 15 Si 0.88 20.80 27.47 -169.99 -4.67 16.13 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.27 -5.88 6.54 56.52 0.37 -5.51 16 19 C 0.12 1.21 6.59 -3.60 -0.02 1.18 16 20 C 0.10 0.84 6.18 -3.60 -0.02 0.82 16 21 N -0.59 -5.72 2.67 -170.70 -0.46 -6.18 16 22 C 0.66 7.11 7.74 54.05 0.42 7.53 16 23 O -0.57 -7.15 11.29 -19.28 -0.22 -7.37 16 24 O -0.36 -3.49 8.52 -40.31 -0.34 -3.84 16 25 C 0.14 1.06 1.13 -90.62 -0.10 0.96 16 26 C -0.18 -1.42 8.37 37.16 0.31 -1.11 16 27 C -0.14 -0.76 8.85 37.16 0.33 -0.43 16 28 C -0.18 -1.41 8.37 37.16 0.31 -1.10 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.71 7.01 -51.93 -0.36 0.34 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.10 0.83 5.54 -51.93 -0.29 0.55 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.39 5.28 5.92 -40.82 -0.24 5.04 16 35 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 37 H 0.02 0.46 7.20 -51.93 -0.37 0.09 16 38 H 0.02 0.36 7.57 -51.93 -0.39 -0.03 16 39 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.11 1.22 7.02 -51.93 -0.36 0.86 16 42 H 0.10 0.76 6.91 -51.93 -0.36 0.40 16 43 H 0.08 0.69 7.40 -51.93 -0.38 0.31 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.09 0.89 5.88 -51.93 -0.31 0.58 16 47 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 49 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 50 H 0.09 0.88 5.88 -51.93 -0.31 0.58 16 51 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 52 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 402.75 15.07 6.07 6.07 Total: -1.00 -33.58 402.75 -8.37 -41.95 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -8.82 Total: 2.91 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: 0.03 Total: 8.86 kcal Atomic # 7 Polarization: -52.44 SS G_CDS: -0.50 Total: -52.94 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: -0.48 Total: -22.98 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.67 Total: 16.13 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.58 -8.37 -41.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495500858.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.444 kcal (2) G-P(sol) polarization free energy of solvation -33.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds