Wall clock time and date at job start Wed Apr 1 2020 01:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34642 * 117.00189 * 2 1 4 4 O 1.21507 * 119.99622 * 0.02562 * 3 2 1 5 5 N 1.34776 * 120.00075 * 179.97438 * 3 2 1 6 6 C 1.46921 * 120.62985 * 180.02562 * 5 3 2 7 7 C 1.53199 * 108.77563 * 233.58956 * 6 5 3 8 8 C 1.53043 * 109.30914 * 305.36427 * 7 6 5 9 9 C 1.52999 * 109.45753 * 181.38300 * 8 7 6 10 10 H 1.09007 * 109.47200 * 60.00146 * 9 8 7 11 11 C 1.52995 * 109.47524 * 300.00155 * 9 8 7 12 12 N 1.46499 * 109.47155 * 180.02562 * 9 8 7 13 13 C 1.34784 * 119.99971 * 205.00183 * 12 9 8 14 14 O 1.21274 * 119.99897 * 359.72827 * 13 12 9 15 15 C 1.50695 * 119.99635 * 179.97438 * 13 12 9 16 16 H 1.09001 * 109.47651 * 40.00319 * 15 13 12 17 17 N 1.46907 * 109.46735 * 160.00100 * 15 13 12 18 18 C 1.52997 * 109.47423 * 279.99926 * 15 13 12 19 19 C 1.52998 * 109.47356 * 175.00449 * 18 15 13 20 20 C 1.50705 * 109.47091 * 180.02562 * 19 18 15 21 21 H 1.08001 * 120.00138 * 359.97438 * 20 19 18 22 22 C 1.37878 * 119.99652 * 179.97438 * 20 19 18 23 23 N 1.31514 * 119.99539 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 120.00282 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.47123 * 89.99885 * 24 22 20 26 26 H 1.48498 * 109.46794 * 209.99963 * 24 22 20 27 27 H 1.48500 * 109.47040 * 329.99806 * 24 22 20 28 28 C 1.53043 * 109.53738 * 61.36610 * 8 7 6 29 29 C 1.46930 * 120.62939 * 359.97438 * 5 3 2 30 30 H 1.08998 * 109.47117 * 59.99228 * 1 2 3 31 31 H 1.08994 * 109.46996 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46783 * 299.99722 * 1 2 3 33 33 H 1.08996 * 109.58847 * 113.80262 * 6 5 3 34 34 H 1.08997 * 109.58703 * 353.36991 * 6 5 3 35 35 H 1.08997 * 109.49849 * 185.41520 * 7 6 5 36 36 H 1.09002 * 109.49597 * 65.31500 * 7 6 5 37 37 H 1.08997 * 109.45816 * 301.35447 * 8 7 6 38 38 H 1.09005 * 109.47314 * 59.99924 * 11 9 8 39 39 H 1.09001 * 109.47831 * 179.97438 * 11 9 8 40 40 H 1.08996 * 109.47227 * 299.99947 * 11 9 8 41 41 H 0.96999 * 119.99984 * 25.00030 * 12 9 8 42 42 H 1.00891 * 110.99927 * 296.04530 * 17 15 13 43 43 H 1.00897 * 111.00006 * 60.00051 * 17 15 13 44 44 H 1.08998 * 109.47257 * 295.00300 * 18 15 13 45 45 H 1.08999 * 109.47106 * 54.99829 * 18 15 13 46 46 H 1.09004 * 109.47202 * 299.99960 * 19 18 15 47 47 H 1.08995 * 109.47573 * 60.00153 * 19 18 15 48 48 H 0.97008 * 119.99614 * 180.02562 * 23 22 20 49 49 H 1.09002 * 109.49455 * 58.58706 * 28 8 7 50 50 H 1.08997 * 109.49594 * 178.67978 * 28 8 7 51 51 H 1.09005 * 109.58079 * 246.19341 * 29 5 3 52 52 H 1.08996 * 109.58625 * 6.61901 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 0.0005 5 7 3.4092 1.2702 0.0005 6 6 4.0906 2.5718 0.0011 7 6 5.0825 2.6097 -1.1658 8 6 6.0242 1.4072 -1.0688 9 6 7.0383 1.4603 -2.2132 10 1 7.6168 2.3816 -2.1435 11 6 6.2989 1.4225 -3.5521 12 7 7.9395 0.3090 -2.1209 13 6 9.1741 0.3749 -2.6576 14 8 9.5372 1.3856 -3.2211 15 6 10.1013 -0.8092 -2.5621 16 1 9.5357 -1.7274 -2.7204 17 7 11.1475 -0.6957 -3.5872 18 6 10.7473 -0.8407 -1.1756 19 6 11.5912 -2.1091 -1.0348 20 6 12.2269 -2.1405 0.3312 21 1 12.0474 -1.3359 1.0290 22 6 13.0378 -3.1963 0.6901 23 7 13.5930 -3.2234 1.8820 24 14 13.3477 -4.5882 -0.5165 25 1 14.5431 -4.2730 -1.3393 26 1 13.5805 -5.8495 0.2320 27 1 12.1660 -4.7486 -1.4014 28 6 5.2132 0.1129 -1.1659 29 6 4.2229 0.0467 0.0017 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 4.6269 2.7031 0.9409 34 1 3.3564 3.3686 -0.1176 35 1 5.6631 3.5310 -1.1201 36 1 4.5368 2.5693 -2.1086 37 1 6.5511 1.4347 -0.1151 38 1 5.6280 2.2789 -3.6210 39 1 7.0213 1.4608 -4.3674 40 1 5.7204 0.5013 -3.6218 41 1 7.6477 -0.5007 -1.6736 42 1 10.7514 -0.7377 -4.5142 43 1 11.6864 0.1481 -3.4621 44 1 11.3842 0.0350 -1.0514 45 1 9.9693 -0.8352 -0.4121 46 1 10.9542 -2.9850 -1.1589 47 1 12.3691 -2.1146 -1.7981 48 1 14.1638 -3.9660 2.1344 49 1 4.6664 0.0961 -2.1087 50 1 5.8869 -0.7428 -1.1202 51 1 4.7700 -0.0272 0.9416 52 1 3.5760 -0.8225 -0.1164 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496314719.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:40:50 Heat of formation + Delta-G solvation = -131.807469 kcal Electronic energy + Delta-G solvation = -30602.940376 eV Core-core repulsion = 26408.836606 eV Total energy + Delta-G solvation = -4194.103770 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.11305 -40.18831 -38.89517 -36.87815 -35.92832 -35.22190 -33.03225 -32.76417 -31.55983 -30.51380 -30.11765 -28.01271 -26.82504 -25.87701 -24.10627 -23.83995 -22.67138 -21.06873 -20.41639 -19.91938 -19.71271 -18.41780 -17.51065 -17.22786 -16.87767 -16.65328 -16.35017 -15.66428 -15.30452 -15.18461 -14.90418 -14.69339 -14.46394 -14.37787 -14.12388 -13.87658 -13.65247 -13.46805 -13.34983 -12.95754 -12.64196 -12.62190 -12.42643 -12.37130 -12.35434 -12.16269 -11.72435 -11.44386 -11.22473 -11.15559 -11.05394 -10.99622 -10.89954 -10.87231 -10.59629 -10.35567 -10.02282 -9.72693 -9.60470 -9.24996 -9.13266 -9.09826 -8.52342 -8.39829 -6.00798 -3.98415 1.76177 2.43283 2.70141 3.15643 3.36367 3.42980 3.47985 3.48474 4.19870 4.27579 4.36744 4.49947 4.59956 4.71865 4.75696 4.80339 4.83102 4.83708 4.96723 5.01783 5.05893 5.08399 5.13182 5.26096 5.33530 5.35292 5.38066 5.39303 5.41536 5.49112 5.52716 5.63107 5.66644 5.78376 5.84365 5.88968 6.03075 6.10179 6.27011 6.42704 6.47422 6.85920 6.90548 7.23836 7.36845 7.49547 7.56872 7.65078 7.85089 7.88012 8.25087 8.56534 9.03870 9.62255 11.12646 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013044 B = 0.002268 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.052364 B =12343.901596 C =13594.364658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.371 6.371 3 C 0.649 3.351 4 O -0.576 6.576 5 N -0.592 5.592 6 C 0.127 3.873 7 C -0.129 4.129 8 C -0.097 4.097 9 C 0.146 3.854 10 H 0.088 0.912 11 C -0.165 4.165 12 N -0.726 5.726 13 C 0.485 3.515 14 O -0.552 6.552 15 C 0.074 3.926 16 H 0.097 0.903 17 N -0.811 5.811 18 C -0.087 4.087 19 C -0.004 4.004 20 C -0.521 4.521 21 H 0.069 0.931 22 C 0.065 3.935 23 N -0.906 5.906 24 Si 0.883 3.117 25 H -0.277 1.277 26 H -0.291 1.291 27 H -0.264 1.264 28 C -0.134 4.134 29 C 0.111 3.889 30 H 0.062 0.938 31 H 0.103 0.897 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.065 0.935 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.400 0.600 42 H 0.335 0.665 43 H 0.350 0.650 44 H 0.059 0.941 45 H 0.059 0.941 46 H 0.012 0.988 47 H 0.029 0.971 48 H 0.262 0.738 49 H 0.075 0.925 50 H 0.080 0.920 51 H 0.076 0.924 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.604 7.736 -7.399 27.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.284 6.284 3 C 0.404 3.596 4 O -0.465 6.465 5 N -0.333 5.333 6 C 0.006 3.994 7 C -0.168 4.168 8 C -0.116 4.116 9 C 0.041 3.959 10 H 0.106 0.894 11 C -0.223 4.223 12 N -0.379 5.379 13 C 0.271 3.729 14 O -0.429 6.429 15 C -0.042 4.042 16 H 0.115 0.885 17 N -0.339 5.339 18 C -0.125 4.125 19 C -0.042 4.042 20 C -0.559 4.559 21 H 0.087 0.913 22 C -0.136 4.136 23 N -0.546 5.546 24 Si 0.711 3.289 25 H -0.203 1.203 26 H -0.217 1.217 27 H -0.189 1.189 28 C -0.173 4.173 29 C -0.011 4.011 30 H 0.081 0.919 31 H 0.121 0.879 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.116 0.884 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.236 0.764 42 H 0.146 0.854 43 H 0.164 0.836 44 H 0.077 0.923 45 H 0.078 0.922 46 H 0.031 0.969 47 H 0.047 0.953 48 H 0.072 0.928 49 H 0.093 0.907 50 H 0.098 0.902 51 H 0.094 0.906 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -25.188 7.954 -7.380 27.426 hybrid contribution -0.546 -0.258 -0.558 0.822 sum -25.734 7.696 -7.938 28.009 Atomic orbital electron populations 1.23202 0.74392 1.03533 1.02704 1.86240 1.24161 1.30996 1.87017 1.18045 0.83182 0.82147 0.76260 1.90988 1.64245 1.34986 1.56279 1.46929 1.01834 1.08736 1.75766 1.21682 0.95249 0.83604 0.98879 1.22027 0.97066 0.98562 0.99110 1.21445 0.95532 0.95233 0.99395 1.20882 0.90135 0.90645 0.94240 0.89438 1.22265 1.00520 1.02069 0.97461 1.46295 1.14810 1.17537 1.59294 1.22601 0.82215 0.91142 0.76936 1.90649 1.75719 1.32972 1.43606 1.21864 0.91181 0.94294 0.96837 0.88527 1.59029 1.24107 1.45834 1.04969 1.21457 0.99162 1.01823 0.90052 1.19482 0.95321 0.91831 0.97537 1.21178 1.28486 1.07635 0.98603 0.91326 1.25024 0.95317 0.98150 0.95083 1.69929 1.32713 1.32127 1.19783 0.86728 0.79272 0.81566 0.81377 1.20304 1.21736 1.18903 1.22083 0.98000 0.98034 0.99153 1.21798 0.93791 0.86402 0.99157 0.91898 0.87903 0.91849 0.90650 0.88441 0.89766 0.90681 0.89715 0.91655 0.92251 0.92272 0.76387 0.85366 0.83616 0.92268 0.92214 0.96941 0.95260 0.92845 0.90653 0.90177 0.90601 0.88768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.34 10.56 101.05 1.07 1.41 16 2 O -0.37 -3.32 9.20 -40.33 -0.37 -3.69 16 3 C 0.65 6.84 8.43 54.05 0.46 7.30 16 4 O -0.58 -7.63 15.54 -19.28 -0.30 -7.93 16 5 N -0.59 -4.97 2.97 -178.53 -0.53 -5.50 16 6 C 0.13 0.93 6.43 -3.71 -0.02 0.90 16 7 C -0.13 -0.83 4.96 -26.61 -0.13 -0.96 16 8 C -0.10 -0.67 2.14 -90.58 -0.19 -0.87 16 9 C 0.15 1.34 2.40 -67.93 -0.16 1.17 16 10 H 0.09 0.99 7.58 -51.92 -0.39 0.59 16 11 C -0.16 -1.42 8.78 37.16 0.33 -1.10 16 12 N -0.73 -7.62 5.00 -53.81 -0.27 -7.89 16 13 C 0.49 6.79 7.03 -10.98 -0.08 6.71 16 14 O -0.55 -9.32 15.91 5.56 0.09 -9.23 16 15 C 0.07 1.11 3.15 -68.86 -0.22 0.89 16 16 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 17 N -0.81 -12.30 8.44 -5.65 -0.05 -12.35 16 18 C -0.09 -1.60 4.78 -26.73 -0.13 -1.73 16 19 C 0.00 -0.10 3.93 -27.88 -0.11 -0.21 16 20 C -0.52 -14.61 9.66 -34.44 -0.33 -14.94 16 21 H 0.07 2.07 7.99 -52.49 -0.42 1.65 16 22 C 0.06 1.88 5.47 -17.82 -0.10 1.79 16 23 N -0.91 -27.88 13.96 55.43 0.77 -27.10 16 24 Si 0.88 21.77 27.47 -169.99 -4.67 17.10 16 25 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 27 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 28 C -0.13 -0.83 4.82 -26.58 -0.13 -0.96 16 29 C 0.11 0.73 6.45 -3.68 -0.02 0.71 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.10 0.81 7.00 -51.93 -0.36 0.45 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.51 6.51 -51.93 -0.34 0.18 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.49 6.46 -51.93 -0.34 0.15 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.46 6.46 -51.93 -0.34 0.13 16 41 H 0.40 3.49 6.84 -40.82 -0.28 3.21 16 42 H 0.33 4.36 9.06 -39.30 -0.36 4.01 16 43 H 0.35 5.47 8.58 -39.29 -0.34 5.13 16 44 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 45 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.01 0.28 7.20 -51.93 -0.37 -0.09 16 47 H 0.03 0.70 7.18 -51.93 -0.37 0.32 16 48 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16 49 H 0.07 0.50 6.51 -51.93 -0.34 0.16 16 50 H 0.08 0.45 6.46 -51.93 -0.34 0.11 16 51 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 52 H 0.09 0.61 6.93 -51.93 -0.36 0.25 16 LS Contribution 406.87 15.07 6.13 6.13 Total: -1.00 -35.46 406.87 -7.73 -43.18 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -8.75 Total: 7.17 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: 0.22 Total: 0.11 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: -0.07 Total: -52.85 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -0.58 Total: -20.85 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.46 -7.73 -43.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496314719.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.625 kcal (2) G-P(sol) polarization free energy of solvation -35.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds