Wall clock time and date at job start Wed Apr 1 2020 01:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34642 * 117.00189 * 2 1 4 4 O 1.21507 * 119.99622 * 0.02562 * 3 2 1 5 5 N 1.34776 * 120.00075 * 179.97438 * 3 2 1 6 6 C 1.46921 * 120.62985 * 180.02562 * 5 3 2 7 7 C 1.53199 * 108.77563 * 233.58956 * 6 5 3 8 8 C 1.53043 * 109.30914 * 305.36427 * 7 6 5 9 9 C 1.52999 * 109.45753 * 181.38300 * 8 7 6 10 10 H 1.09007 * 109.47200 * 60.00146 * 9 8 7 11 11 C 1.52995 * 109.47524 * 300.00155 * 9 8 7 12 12 N 1.46499 * 109.47155 * 180.02562 * 9 8 7 13 13 C 1.34784 * 119.99971 * 205.00183 * 12 9 8 14 14 O 1.21274 * 119.99897 * 359.72827 * 13 12 9 15 15 C 1.50695 * 119.99635 * 179.97438 * 13 12 9 16 16 H 1.09001 * 109.47651 * 40.00319 * 15 13 12 17 17 N 1.46907 * 109.46735 * 160.00100 * 15 13 12 18 18 C 1.52997 * 109.47423 * 279.99926 * 15 13 12 19 19 C 1.52998 * 109.47356 * 175.00449 * 18 15 13 20 20 C 1.50705 * 109.47091 * 180.02562 * 19 18 15 21 21 H 1.08001 * 120.00138 * 359.97438 * 20 19 18 22 22 C 1.37878 * 119.99652 * 179.97438 * 20 19 18 23 23 N 1.31514 * 119.99539 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 120.00282 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.47123 * 89.99885 * 24 22 20 26 26 H 1.48498 * 109.46794 * 209.99963 * 24 22 20 27 27 H 1.48500 * 109.47040 * 329.99806 * 24 22 20 28 28 C 1.53043 * 109.53738 * 61.36610 * 8 7 6 29 29 C 1.46930 * 120.62939 * 359.97438 * 5 3 2 30 30 H 1.08998 * 109.47117 * 59.99228 * 1 2 3 31 31 H 1.08994 * 109.46996 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46783 * 299.99722 * 1 2 3 33 33 H 1.08996 * 109.58847 * 113.80262 * 6 5 3 34 34 H 1.08997 * 109.58703 * 353.36991 * 6 5 3 35 35 H 1.08997 * 109.49849 * 185.41520 * 7 6 5 36 36 H 1.09002 * 109.49597 * 65.31500 * 7 6 5 37 37 H 1.08997 * 109.45816 * 301.35447 * 8 7 6 38 38 H 1.09005 * 109.47314 * 59.99924 * 11 9 8 39 39 H 1.09001 * 109.47831 * 179.97438 * 11 9 8 40 40 H 1.08996 * 109.47227 * 299.99947 * 11 9 8 41 41 H 0.96999 * 119.99984 * 25.00030 * 12 9 8 42 42 H 1.00891 * 110.99927 * 296.04530 * 17 15 13 43 43 H 1.00897 * 111.00006 * 60.00051 * 17 15 13 44 44 H 1.08998 * 109.47257 * 295.00300 * 18 15 13 45 45 H 1.08999 * 109.47106 * 54.99829 * 18 15 13 46 46 H 1.09004 * 109.47202 * 299.99960 * 19 18 15 47 47 H 1.08995 * 109.47573 * 60.00153 * 19 18 15 48 48 H 0.97008 * 119.99614 * 180.02562 * 23 22 20 49 49 H 1.09002 * 109.49455 * 58.58706 * 28 8 7 50 50 H 1.08997 * 109.49594 * 178.67978 * 28 8 7 51 51 H 1.09005 * 109.58079 * 246.19341 * 29 5 3 52 52 H 1.08996 * 109.58625 * 6.61901 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 0.0005 5 7 3.4092 1.2702 0.0005 6 6 4.0906 2.5718 0.0011 7 6 5.0825 2.6097 -1.1658 8 6 6.0242 1.4072 -1.0688 9 6 7.0383 1.4603 -2.2132 10 1 7.6168 2.3816 -2.1435 11 6 6.2989 1.4225 -3.5521 12 7 7.9395 0.3090 -2.1209 13 6 9.1741 0.3749 -2.6576 14 8 9.5372 1.3856 -3.2211 15 6 10.1013 -0.8092 -2.5621 16 1 9.5357 -1.7274 -2.7204 17 7 11.1475 -0.6957 -3.5872 18 6 10.7473 -0.8407 -1.1756 19 6 11.5912 -2.1091 -1.0348 20 6 12.2269 -2.1405 0.3312 21 1 12.0474 -1.3359 1.0290 22 6 13.0378 -3.1963 0.6901 23 7 13.5930 -3.2234 1.8820 24 14 13.3477 -4.5882 -0.5165 25 1 14.5431 -4.2730 -1.3393 26 1 13.5805 -5.8495 0.2320 27 1 12.1660 -4.7486 -1.4014 28 6 5.2132 0.1129 -1.1659 29 6 4.2229 0.0467 0.0017 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 4.6269 2.7031 0.9409 34 1 3.3564 3.3686 -0.1176 35 1 5.6631 3.5310 -1.1201 36 1 4.5368 2.5693 -2.1086 37 1 6.5511 1.4347 -0.1151 38 1 5.6280 2.2789 -3.6210 39 1 7.0213 1.4608 -4.3674 40 1 5.7204 0.5013 -3.6218 41 1 7.6477 -0.5007 -1.6736 42 1 10.7514 -0.7377 -4.5142 43 1 11.6864 0.1481 -3.4621 44 1 11.3842 0.0350 -1.0514 45 1 9.9693 -0.8352 -0.4121 46 1 10.9542 -2.9850 -1.1589 47 1 12.3691 -2.1146 -1.7981 48 1 14.1638 -3.9660 2.1344 49 1 4.6664 0.0961 -2.1087 50 1 5.8869 -0.7428 -1.1202 51 1 4.7700 -0.0272 0.9416 52 1 3.5760 -0.8225 -0.1164 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496314719.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:40:49 Heat of formation + Delta-G solvation = -158.485576 kcal Electronic energy + Delta-G solvation = -30604.097226 eV Core-core repulsion = 26408.836606 eV Total energy + Delta-G solvation = -4195.260620 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.82402 -41.16938 -39.66813 -37.63760 -36.94116 -36.46804 -34.75257 -33.83363 -32.25097 -32.11963 -30.89532 -28.56195 -28.32626 -26.62271 -25.37261 -24.48209 -23.60401 -22.18210 -21.61085 -21.11760 -20.37783 -19.12979 -18.90662 -18.28041 -18.02625 -17.56439 -17.35717 -16.87181 -16.24898 -15.90097 -15.87011 -15.66612 -15.58717 -15.30098 -15.13004 -14.87355 -14.64646 -14.47902 -14.30814 -14.10816 -13.92266 -13.59924 -13.50859 -13.23580 -13.06569 -12.94077 -12.83597 -12.78611 -12.47084 -12.03603 -11.89159 -11.86667 -11.80965 -11.79272 -11.76191 -11.58089 -11.51547 -11.24333 -11.22700 -11.05565 -10.68748 -10.11199 -9.83144 -9.60899 -8.22635 -6.25465 1.14271 1.43486 1.44607 1.56992 1.58334 1.66512 2.22237 2.43346 2.90568 3.14269 3.56249 3.60237 3.69511 3.78478 3.89440 4.05352 4.12338 4.16987 4.30550 4.31507 4.33092 4.35198 4.36440 4.43219 4.49935 4.62411 4.69988 4.75230 4.79806 4.81425 4.82184 4.87124 4.91144 4.97249 5.00300 5.14844 5.18323 5.19711 5.26307 5.44353 5.47623 5.53436 5.56764 5.69047 5.76072 6.11280 6.21903 6.35319 6.49562 6.58526 6.83502 7.14958 7.23003 7.39043 8.94134 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013044 B = 0.002268 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.052364 B =12343.901596 C =13594.364658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 O -0.373 6.373 3 C 0.643 3.357 4 O -0.611 6.611 5 N -0.589 5.589 6 C 0.126 3.874 7 C -0.122 4.122 8 C -0.088 4.088 9 C 0.147 3.853 10 H 0.067 0.933 11 C -0.159 4.159 12 N -0.711 5.711 13 C 0.488 3.512 14 O -0.583 6.583 15 C 0.083 3.917 16 H 0.120 0.880 17 N -0.820 5.820 18 C -0.078 4.078 19 C 0.002 3.998 20 C -0.529 4.529 21 H 0.029 0.971 22 C 0.001 3.999 23 N -0.955 5.955 24 Si 0.953 3.047 25 H -0.274 1.274 26 H -0.288 1.288 27 H -0.239 1.239 28 C -0.130 4.130 29 C 0.110 3.890 30 H 0.059 0.941 31 H 0.134 0.866 32 H 0.059 0.941 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.036 0.964 40 H 0.071 0.929 41 H 0.412 0.588 42 H 0.348 0.652 43 H 0.345 0.655 44 H 0.037 0.963 45 H 0.069 0.931 46 H 0.025 0.975 47 H 0.025 0.975 48 H 0.264 0.736 49 H 0.076 0.924 50 H 0.092 0.908 51 H 0.084 0.916 52 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.996 6.162 -8.896 29.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 O -0.286 6.286 3 C 0.397 3.603 4 O -0.503 6.503 5 N -0.329 5.329 6 C 0.005 3.995 7 C -0.160 4.160 8 C -0.107 4.107 9 C 0.043 3.957 10 H 0.085 0.915 11 C -0.217 4.217 12 N -0.364 5.364 13 C 0.274 3.726 14 O -0.463 6.463 15 C -0.033 4.033 16 H 0.138 0.862 17 N -0.349 5.349 18 C -0.117 4.117 19 C -0.035 4.035 20 C -0.567 4.567 21 H 0.047 0.953 22 C -0.195 4.195 23 N -0.597 5.597 24 Si 0.777 3.223 25 H -0.200 1.200 26 H -0.214 1.214 27 H -0.163 1.163 28 C -0.168 4.168 29 C -0.011 4.011 30 H 0.078 0.922 31 H 0.152 0.848 32 H 0.078 0.922 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.110 0.890 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.095 0.905 39 H 0.056 0.944 40 H 0.090 0.910 41 H 0.250 0.750 42 H 0.161 0.839 43 H 0.158 0.842 44 H 0.056 0.944 45 H 0.087 0.913 46 H 0.043 0.957 47 H 0.043 0.957 48 H 0.073 0.927 49 H 0.094 0.906 50 H 0.110 0.890 51 H 0.102 0.898 52 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -26.619 6.357 -8.880 28.773 hybrid contribution -0.148 0.296 -0.006 0.331 sum -26.767 6.654 -8.887 28.978 Atomic orbital electron populations 1.23467 0.73018 1.05514 1.02412 1.86245 1.25565 1.30082 1.86730 1.18295 0.83749 0.82135 0.76074 1.90959 1.65154 1.36164 1.58037 1.47092 1.01378 1.09678 1.74791 1.21732 0.95008 0.83018 0.99738 1.21966 0.96681 0.98756 0.98628 1.21362 0.95045 0.96019 0.98301 1.20927 0.90026 0.89163 0.95600 0.91505 1.22203 1.00102 1.03322 0.96027 1.46193 1.13879 1.18398 1.57896 1.22326 0.83043 0.90224 0.77043 1.90645 1.76559 1.33870 1.45271 1.21687 0.91260 0.95824 0.94527 0.86217 1.59020 1.24417 1.45609 1.05873 1.21250 0.98714 0.98720 0.92984 1.19374 0.95663 0.94414 0.94090 1.21574 1.28539 1.06270 1.00293 0.95274 1.26014 0.95178 1.01324 0.96973 1.70087 1.34019 1.33397 1.22165 0.85616 0.79969 0.77718 0.79013 1.20002 1.21438 1.16253 1.22061 0.97889 0.97829 0.98992 1.21913 0.93701 0.85792 0.99719 0.92180 0.84765 0.92233 0.89610 0.89663 0.89004 0.90827 0.89722 0.90489 0.94444 0.90988 0.74991 0.83902 0.84173 0.94365 0.91262 0.95675 0.95669 0.92731 0.90585 0.88954 0.89801 0.88300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.55 10.56 113.37 1.20 1.75 16 2 O -0.37 -6.21 9.20 -55.51 -0.51 -6.72 16 3 C 0.64 13.08 8.43 129.79 1.09 14.17 16 4 O -0.61 -16.25 15.54 19.82 0.31 -15.94 16 5 N -0.59 -9.09 2.97 -949.15 -2.82 -11.91 16 6 C 0.13 1.70 6.43 86.37 0.56 2.25 16 7 C -0.12 -1.37 4.96 30.68 0.15 -1.22 16 8 C -0.09 -1.04 2.14 -10.77 -0.02 -1.06 16 9 C 0.15 2.44 2.40 44.99 0.11 2.55 16 10 H 0.07 1.44 7.58 -2.38 -0.02 1.42 16 11 C -0.16 -2.43 8.78 71.98 0.63 -1.80 16 12 N -0.71 -13.31 5.00 -442.54 -2.21 -15.52 16 13 C 0.49 12.82 7.03 87.65 0.62 13.44 16 14 O -0.58 -19.21 15.91 -3.01 -0.05 -19.26 16 15 C 0.08 2.28 3.15 44.17 0.14 2.42 16 16 H 0.12 2.78 8.14 -2.39 -0.02 2.76 16 17 N -0.82 -23.36 8.44 -171.80 -1.45 -24.81 16 18 C -0.08 -2.80 4.78 30.59 0.15 -2.66 16 19 C 0.00 0.09 3.93 29.85 0.12 0.21 16 20 C -0.53 -29.88 9.66 25.60 0.25 -29.63 16 21 H 0.03 1.81 7.99 -2.91 -0.02 1.79 16 22 C 0.00 0.07 5.47 84.65 0.46 0.53 16 23 N -0.96 -59.85 13.96 21.45 0.30 -59.55 16 24 Si 0.95 44.09 27.47 68.60 1.88 45.98 16 25 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 26 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 27 H -0.24 -10.03 6.54 99.48 0.65 -9.38 16 28 C -0.13 -1.24 4.82 30.69 0.15 -1.10 16 29 C 0.11 1.21 6.45 86.38 0.56 1.76 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.13 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.08 1.40 7.00 -2.39 -0.02 1.38 16 35 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.07 0.88 6.51 -2.39 -0.02 0.86 16 37 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.08 1.01 6.46 -2.38 -0.02 0.99 16 39 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.07 0.92 6.46 -2.39 -0.02 0.91 16 41 H 0.41 5.84 6.84 -92.71 -0.63 5.21 16 42 H 0.35 8.32 9.06 -89.70 -0.81 7.51 16 43 H 0.34 10.49 8.58 -89.70 -0.77 9.72 16 44 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 45 H 0.07 2.31 8.14 -2.39 -0.02 2.30 16 46 H 0.02 1.06 7.20 -2.38 -0.02 1.04 16 47 H 0.02 1.14 7.18 -2.39 -0.02 1.13 16 48 H 0.26 15.47 8.31 -92.70 -0.77 14.70 16 49 H 0.08 0.77 6.51 -2.39 -0.02 0.75 16 50 H 0.09 0.69 6.46 -2.39 -0.02 0.68 16 51 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 52 H 0.10 1.03 6.93 -2.39 -0.02 1.01 16 Total: -1.00 -78.02 406.87 0.28 -77.74 By element: Atomic # 1 Polarization: 29.70 SS G_CDS: -1.32 Total: 28.38 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: 6.15 Total: 1.62 kcal Atomic # 7 Polarization: -105.61 SS G_CDS: -6.18 Total: -111.79 kcal Atomic # 8 Polarization: -41.68 SS G_CDS: -0.25 Total: -41.93 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 1.88 Total: 45.98 kcal Total: -78.02 0.28 -77.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496314719.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.743 kcal (2) G-P(sol) polarization free energy of solvation -78.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds