Wall clock time and date at job start Wed Apr 1 2020 01:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34639 * 117.00166 * 2 1 4 4 O 1.21511 * 119.99741 * 0.02562 * 3 2 1 5 5 N 1.34775 * 119.99940 * 180.02562 * 3 2 1 6 6 C 1.46928 * 120.62928 * 180.02562 * 5 3 2 7 7 C 1.53190 * 108.77494 * 233.58604 * 6 5 3 8 8 C 1.53042 * 109.31045 * 305.36595 * 7 6 5 9 9 C 1.53005 * 109.46052 * 181.38557 * 8 7 6 10 10 H 1.09001 * 109.46907 * 299.97107 * 9 8 7 11 11 C 1.53001 * 109.47103 * 59.97077 * 9 8 7 12 12 N 1.46496 * 109.47528 * 179.97438 * 9 8 7 13 13 C 1.34772 * 120.00222 * 154.99962 * 12 9 8 14 14 O 1.21283 * 119.99912 * 359.97438 * 13 12 9 15 15 C 1.50700 * 119.99971 * 180.02562 * 13 12 9 16 16 H 1.09001 * 109.46817 * 319.98961 * 15 13 12 17 17 N 1.46910 * 109.46728 * 199.99907 * 15 13 12 18 18 C 1.52992 * 109.47798 * 79.99728 * 15 13 12 19 19 C 1.52997 * 109.47482 * 185.00026 * 18 15 13 20 20 C 1.50701 * 109.47212 * 179.97438 * 19 18 15 21 21 H 1.07998 * 120.00129 * 0.02562 * 20 19 18 22 22 C 1.37880 * 119.99861 * 179.97438 * 20 19 18 23 23 N 1.31510 * 119.99913 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99734 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47294 * 60.00559 * 24 22 20 26 26 H 1.48503 * 109.46954 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47431 * 300.00157 * 24 22 20 28 28 C 1.53040 * 109.53162 * 61.37370 * 8 7 6 29 29 C 1.46923 * 120.63098 * 359.97438 * 5 3 2 30 30 H 1.08994 * 109.46924 * 299.99744 * 1 2 3 31 31 H 1.09002 * 109.47083 * 59.99306 * 1 2 3 32 32 H 1.09000 * 109.47218 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.58636 * 113.80156 * 6 5 3 34 34 H 1.09000 * 109.70137 * 353.44206 * 6 5 3 35 35 H 1.08993 * 109.49941 * 185.41086 * 7 6 5 36 36 H 1.08998 * 109.49753 * 65.31427 * 7 6 5 37 37 H 1.09001 * 109.45967 * 301.35646 * 8 7 6 38 38 H 1.08994 * 109.47291 * 180.02562 * 11 9 8 39 39 H 1.09001 * 109.47048 * 300.00170 * 11 9 8 40 40 H 1.08991 * 109.47177 * 60.00248 * 11 9 8 41 41 H 0.97003 * 119.99378 * 335.00106 * 12 9 8 42 42 H 1.00894 * 110.99558 * 176.04306 * 17 15 13 43 43 H 1.00892 * 110.99957 * 299.99600 * 17 15 13 44 44 H 1.09002 * 109.47103 * 64.99779 * 18 15 13 45 45 H 1.08998 * 109.46862 * 305.00591 * 18 15 13 46 46 H 1.09002 * 109.47153 * 59.99783 * 19 18 15 47 47 H 1.09001 * 109.46832 * 299.99974 * 19 18 15 48 48 H 0.97002 * 119.99768 * 179.97438 * 23 22 20 49 49 H 1.08993 * 109.49855 * 58.57415 * 28 8 7 50 50 H 1.08994 * 109.50047 * 178.67730 * 28 8 7 51 51 H 1.09005 * 109.58518 * 246.20257 * 29 5 3 52 52 H 1.08993 * 109.58994 * 6.48205 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 0.0005 5 7 3.4092 1.2701 -0.0005 6 6 4.0906 2.5718 0.0000 7 6 5.0816 2.6101 -1.1676 8 6 6.0233 1.4075 -1.0717 9 6 7.0366 1.4611 -2.2168 10 1 6.5091 1.4340 -3.1703 11 6 7.8483 2.7544 -2.1196 12 7 7.9387 0.3104 -2.1250 13 6 8.5599 -0.1487 -3.2294 14 8 8.3719 0.3906 -4.2994 15 6 9.4874 -1.3327 -3.1350 16 1 10.0791 -1.2588 -2.2226 17 7 10.3829 -1.3473 -4.2995 18 6 8.6660 -2.6231 -3.1072 19 6 9.5979 -3.8163 -2.8862 20 6 8.7887 -5.0873 -2.8582 21 1 7.7170 -5.0481 -2.9857 22 6 9.4167 -6.3004 -2.6708 23 7 10.7218 -6.3482 -2.5160 24 14 8.4137 -7.8759 -2.6368 25 1 7.7009 -8.0369 -3.9295 26 1 9.3183 -9.0339 -2.4221 27 1 7.4247 -7.8093 -1.5310 28 6 5.2122 0.1134 -1.1689 29 6 4.2229 0.0468 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5140 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 4.6276 2.7027 0.9395 34 1 3.3578 3.3703 -0.1163 35 1 5.6621 3.5314 -1.1220 36 1 4.5352 2.5701 -2.1099 37 1 6.5510 1.4346 -0.1183 38 1 8.5698 2.7928 -2.9356 39 1 7.1771 3.6106 -2.1879 40 1 8.3757 2.7815 -1.1662 41 1 8.0887 -0.1211 -1.2693 42 1 11.0572 -2.0944 -4.2277 43 1 9.8580 -1.4152 -5.1585 44 1 8.1430 -2.7415 -4.0562 45 1 7.9398 -2.5741 -2.2959 46 1 10.1209 -3.6979 -1.9372 47 1 10.3241 -3.8652 -3.6976 48 1 11.1636 -7.2016 -2.3838 49 1 4.6646 0.0972 -2.1111 50 1 5.8857 -0.7424 -1.1242 51 1 4.7706 -0.0278 0.9390 52 1 3.5757 -0.8226 -0.1160 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496314720.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:40:54 Heat of formation + Delta-G solvation = -138.285685 kcal Electronic energy + Delta-G solvation = -30718.217815 eV Core-core repulsion = 26523.833128 eV Total energy + Delta-G solvation = -4194.384687 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.00151 -39.97171 -38.69809 -36.75571 -35.89832 -35.24723 -32.94273 -32.82396 -31.53851 -30.19478 -29.88493 -27.92116 -26.58966 -25.72677 -24.18232 -23.49486 -22.37647 -21.11713 -20.57776 -20.29382 -19.64117 -18.43873 -17.41753 -17.23406 -16.83388 -16.32479 -16.21109 -15.22336 -14.95111 -14.89624 -14.58820 -14.57285 -14.41408 -14.25560 -14.21231 -13.83374 -13.62411 -13.39090 -13.06443 -13.01025 -12.83523 -12.63591 -12.33343 -12.25973 -12.13802 -11.79878 -11.65081 -11.60101 -11.10796 -11.07371 -11.00125 -10.96230 -10.90185 -10.87387 -10.72571 -10.61416 -10.01042 -9.90800 -9.31202 -9.21911 -9.14110 -8.96548 -8.46060 -8.19239 -6.10726 -4.14032 1.84445 2.50768 2.94667 3.23552 3.26503 3.31743 3.33930 3.57018 4.26351 4.36711 4.37460 4.46976 4.68147 4.84234 4.91077 4.91382 4.92885 5.02609 5.07842 5.12507 5.18439 5.20149 5.25362 5.26002 5.37326 5.39968 5.45839 5.52292 5.57354 5.61480 5.62092 5.74731 5.75518 5.87193 5.98086 6.03985 6.10000 6.17888 6.26180 6.49348 6.58844 6.85141 6.97847 7.42675 7.49650 7.59270 7.71190 7.86124 7.89624 7.95614 8.28670 8.48697 8.91821 9.50979 11.00131 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.009077 B = 0.002747 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3083.958158 B =10188.676083 C =12829.265866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.369 6.369 3 C 0.649 3.351 4 O -0.577 6.577 5 N -0.593 5.593 6 C 0.128 3.872 7 C -0.130 4.130 8 C -0.095 4.095 9 C 0.149 3.851 10 H 0.086 0.914 11 C -0.165 4.165 12 N -0.730 5.730 13 C 0.527 3.473 14 O -0.538 6.538 15 C 0.074 3.926 16 H 0.095 0.905 17 N -0.831 5.831 18 C -0.136 4.136 19 C 0.025 3.975 20 C -0.525 4.525 21 H 0.054 0.946 22 C 0.059 3.941 23 N -0.893 5.893 24 Si 0.892 3.108 25 H -0.277 1.277 26 H -0.287 1.287 27 H -0.276 1.276 28 C -0.132 4.132 29 C 0.111 3.889 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.103 0.897 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.056 0.944 41 H 0.400 0.600 42 H 0.354 0.646 43 H 0.345 0.655 44 H 0.054 0.946 45 H 0.055 0.945 46 H 0.018 0.982 47 H 0.017 0.983 48 H 0.262 0.738 49 H 0.070 0.930 50 H 0.086 0.914 51 H 0.073 0.927 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.372 17.147 7.736 23.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.283 6.283 3 C 0.404 3.596 4 O -0.467 6.467 5 N -0.334 5.334 6 C 0.007 3.993 7 C -0.168 4.168 8 C -0.114 4.114 9 C 0.044 3.956 10 H 0.104 0.896 11 C -0.223 4.223 12 N -0.383 5.383 13 C 0.314 3.686 14 O -0.414 6.414 15 C -0.041 4.041 16 H 0.113 0.887 17 N -0.363 5.363 18 C -0.176 4.176 19 C -0.012 4.012 20 C -0.563 4.563 21 H 0.072 0.928 22 C -0.143 4.143 23 N -0.532 5.532 24 Si 0.720 3.280 25 H -0.202 1.202 26 H -0.212 1.212 27 H -0.202 1.202 28 C -0.170 4.170 29 C -0.011 4.011 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.121 0.879 33 H 0.092 0.908 34 H 0.115 0.885 35 H 0.105 0.895 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.076 0.924 41 H 0.234 0.766 42 H 0.169 0.831 43 H 0.158 0.842 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.036 0.964 47 H 0.035 0.965 48 H 0.072 0.928 49 H 0.089 0.911 50 H 0.104 0.896 51 H 0.092 0.908 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -13.398 18.416 7.212 23.889 hybrid contribution -0.923 -2.177 0.316 2.386 sum -14.321 16.239 7.528 22.923 Atomic orbital electron populations 1.23204 0.74402 1.03577 1.02636 1.86255 1.24157 1.30935 1.86944 1.18055 0.83200 0.82154 0.76199 1.90980 1.64280 1.35002 1.56405 1.46952 1.01877 1.08762 1.75761 1.21657 0.95238 0.83714 0.98711 1.22039 0.97027 0.98628 0.99115 1.21448 0.95550 0.95259 0.99129 1.20866 0.89852 0.85692 0.99203 0.89622 1.22232 1.00711 0.96891 1.02464 1.46064 1.47657 1.33223 1.11349 1.20868 0.80051 0.84227 0.83454 1.90632 1.63050 1.59328 1.28391 1.21483 0.93768 0.92412 0.96462 0.88696 1.58744 1.19357 1.54309 1.03895 1.22363 0.99413 0.94414 1.01381 1.19094 0.94206 0.90828 0.97113 1.21141 0.93743 0.91438 1.49970 0.92775 1.25008 0.94907 0.99213 0.95137 1.69936 1.08150 1.25931 1.49181 0.86652 0.79968 0.82725 0.78639 1.20221 1.21221 1.20200 1.22010 0.97972 0.98236 0.98809 1.21810 0.93874 0.86351 0.99055 0.91911 0.91876 0.87876 0.90838 0.88519 0.89527 0.90956 0.90111 0.91879 0.91667 0.92448 0.76592 0.83106 0.84168 0.92759 0.92591 0.96370 0.96452 0.92808 0.91113 0.89581 0.90827 0.88738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.41 10.56 101.05 1.07 1.48 16 2 O -0.37 -3.82 9.20 -40.32 -0.37 -4.20 16 3 C 0.65 7.54 8.43 54.05 0.46 8.00 16 4 O -0.58 -8.13 15.55 -19.28 -0.30 -8.43 16 5 N -0.59 -5.54 2.97 -178.53 -0.53 -6.07 16 6 C 0.13 0.97 6.43 -3.71 -0.02 0.94 16 7 C -0.13 -0.88 5.04 -26.61 -0.13 -1.02 16 8 C -0.09 -0.70 1.79 -90.57 -0.16 -0.86 16 9 C 0.15 1.46 2.16 -67.93 -0.15 1.32 16 10 H 0.09 1.05 7.58 -51.93 -0.39 0.65 16 11 C -0.16 -1.51 9.13 37.16 0.34 -1.17 16 12 N -0.73 -8.29 4.36 -53.81 -0.23 -8.53 16 13 C 0.53 8.14 7.04 -10.99 -0.08 8.07 16 14 O -0.54 -10.06 15.91 5.55 0.09 -9.97 16 15 C 0.07 1.20 3.21 -68.86 -0.22 0.98 16 16 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 17 N -0.83 -14.01 8.94 -5.65 -0.05 -14.06 16 18 C -0.14 -2.54 4.78 -26.74 -0.13 -2.67 16 19 C 0.02 0.58 4.74 -27.88 -0.13 0.45 16 20 C -0.52 -14.07 9.11 -34.44 -0.31 -14.39 16 21 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 22 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 23 N -0.89 -25.67 13.29 55.43 0.74 -24.93 16 24 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 28 C -0.13 -1.10 5.22 -26.59 -0.14 -1.24 16 29 C 0.11 0.89 6.45 -3.69 -0.02 0.87 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.10 0.83 7.01 -51.93 -0.36 0.47 16 35 H 0.09 0.47 6.36 -51.93 -0.33 0.14 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.48 6.40 -51.93 -0.33 0.15 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.40 3.76 8.39 -40.82 -0.34 3.42 16 42 H 0.35 6.00 7.55 -39.29 -0.30 5.70 16 43 H 0.35 5.94 8.58 -39.30 -0.34 5.60 16 44 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 47 H 0.02 0.43 6.87 -51.93 -0.36 0.07 16 48 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 49 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 50 H 0.09 0.75 7.40 -51.93 -0.38 0.37 16 51 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 52 H 0.09 0.80 6.92 -51.93 -0.36 0.44 16 LS Contribution 413.72 15.07 6.23 6.23 Total: -1.00 -33.64 413.72 -8.14 -41.78 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: -8.96 Total: 9.98 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: 0.26 Total: 2.29 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: -0.08 Total: -53.59 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -0.58 Total: -22.60 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -33.64 -8.14 -41.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496314720.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.507 kcal (2) G-P(sol) polarization free energy of solvation -33.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds