Wall clock time and date at job start Wed Apr 1 2020 01:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34639 * 117.00166 * 2 1 4 4 O 1.21511 * 119.99741 * 0.02562 * 3 2 1 5 5 N 1.34775 * 119.99940 * 180.02562 * 3 2 1 6 6 C 1.46928 * 120.62928 * 180.02562 * 5 3 2 7 7 C 1.53190 * 108.77494 * 233.58604 * 6 5 3 8 8 C 1.53042 * 109.31045 * 305.36595 * 7 6 5 9 9 C 1.53005 * 109.46052 * 181.38557 * 8 7 6 10 10 H 1.09001 * 109.46907 * 299.97107 * 9 8 7 11 11 C 1.53001 * 109.47103 * 59.97077 * 9 8 7 12 12 N 1.46496 * 109.47528 * 179.97438 * 9 8 7 13 13 C 1.34772 * 120.00222 * 154.99962 * 12 9 8 14 14 O 1.21283 * 119.99912 * 359.97438 * 13 12 9 15 15 C 1.50700 * 119.99971 * 180.02562 * 13 12 9 16 16 H 1.09001 * 109.46817 * 319.98961 * 15 13 12 17 17 N 1.46910 * 109.46728 * 199.99907 * 15 13 12 18 18 C 1.52992 * 109.47798 * 79.99728 * 15 13 12 19 19 C 1.52997 * 109.47482 * 185.00026 * 18 15 13 20 20 C 1.50701 * 109.47212 * 179.97438 * 19 18 15 21 21 H 1.07998 * 120.00129 * 0.02562 * 20 19 18 22 22 C 1.37880 * 119.99861 * 179.97438 * 20 19 18 23 23 N 1.31510 * 119.99913 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99734 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47294 * 60.00559 * 24 22 20 26 26 H 1.48503 * 109.46954 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47431 * 300.00157 * 24 22 20 28 28 C 1.53040 * 109.53162 * 61.37370 * 8 7 6 29 29 C 1.46923 * 120.63098 * 359.97438 * 5 3 2 30 30 H 1.08994 * 109.46924 * 299.99744 * 1 2 3 31 31 H 1.09002 * 109.47083 * 59.99306 * 1 2 3 32 32 H 1.09000 * 109.47218 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.58636 * 113.80156 * 6 5 3 34 34 H 1.09000 * 109.70137 * 353.44206 * 6 5 3 35 35 H 1.08993 * 109.49941 * 185.41086 * 7 6 5 36 36 H 1.08998 * 109.49753 * 65.31427 * 7 6 5 37 37 H 1.09001 * 109.45967 * 301.35646 * 8 7 6 38 38 H 1.08994 * 109.47291 * 180.02562 * 11 9 8 39 39 H 1.09001 * 109.47048 * 300.00170 * 11 9 8 40 40 H 1.08991 * 109.47177 * 60.00248 * 11 9 8 41 41 H 0.97003 * 119.99378 * 335.00106 * 12 9 8 42 42 H 1.00894 * 110.99558 * 176.04306 * 17 15 13 43 43 H 1.00892 * 110.99957 * 299.99600 * 17 15 13 44 44 H 1.09002 * 109.47103 * 64.99779 * 18 15 13 45 45 H 1.08998 * 109.46862 * 305.00591 * 18 15 13 46 46 H 1.09002 * 109.47153 * 59.99783 * 19 18 15 47 47 H 1.09001 * 109.46832 * 299.99974 * 19 18 15 48 48 H 0.97002 * 119.99768 * 179.97438 * 23 22 20 49 49 H 1.08993 * 109.49855 * 58.57415 * 28 8 7 50 50 H 1.08994 * 109.50047 * 178.67730 * 28 8 7 51 51 H 1.09005 * 109.58518 * 246.20257 * 29 5 3 52 52 H 1.08993 * 109.58994 * 6.48205 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 0.0005 5 7 3.4092 1.2701 -0.0005 6 6 4.0906 2.5718 0.0000 7 6 5.0816 2.6101 -1.1676 8 6 6.0233 1.4075 -1.0717 9 6 7.0366 1.4611 -2.2168 10 1 6.5091 1.4340 -3.1703 11 6 7.8483 2.7544 -2.1196 12 7 7.9387 0.3104 -2.1250 13 6 8.5599 -0.1487 -3.2294 14 8 8.3719 0.3906 -4.2994 15 6 9.4874 -1.3327 -3.1350 16 1 10.0791 -1.2588 -2.2226 17 7 10.3829 -1.3473 -4.2995 18 6 8.6660 -2.6231 -3.1072 19 6 9.5979 -3.8163 -2.8862 20 6 8.7887 -5.0873 -2.8582 21 1 7.7170 -5.0481 -2.9857 22 6 9.4167 -6.3004 -2.6708 23 7 10.7218 -6.3482 -2.5160 24 14 8.4137 -7.8759 -2.6368 25 1 7.7009 -8.0369 -3.9295 26 1 9.3183 -9.0339 -2.4221 27 1 7.4247 -7.8093 -1.5310 28 6 5.2122 0.1134 -1.1689 29 6 4.2229 0.0468 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5140 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 4.6276 2.7027 0.9395 34 1 3.3578 3.3703 -0.1163 35 1 5.6621 3.5314 -1.1220 36 1 4.5352 2.5701 -2.1099 37 1 6.5510 1.4346 -0.1183 38 1 8.5698 2.7928 -2.9356 39 1 7.1771 3.6106 -2.1879 40 1 8.3757 2.7815 -1.1662 41 1 8.0887 -0.1211 -1.2693 42 1 11.0572 -2.0944 -4.2277 43 1 9.8580 -1.4152 -5.1585 44 1 8.1430 -2.7415 -4.0562 45 1 7.9398 -2.5741 -2.2959 46 1 10.1209 -3.6979 -1.9372 47 1 10.3241 -3.8652 -3.6976 48 1 11.1636 -7.2016 -2.3838 49 1 4.6646 0.0972 -2.1111 50 1 5.8857 -0.7424 -1.1242 51 1 4.7706 -0.0278 0.9390 52 1 3.5757 -0.8226 -0.1160 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496314720.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:40:53 Heat of formation + Delta-G solvation = -162.303140 kcal Electronic energy + Delta-G solvation = -30719.259290 eV Core-core repulsion = 26523.833128 eV Total energy + Delta-G solvation = -4195.426162 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.78923 -41.06423 -39.55689 -37.62939 -37.09967 -36.47331 -34.80883 -33.78943 -32.19342 -31.65411 -31.01556 -28.55831 -28.10192 -26.55792 -25.65927 -24.28033 -23.28576 -22.37900 -21.62893 -21.30361 -20.63394 -19.23205 -18.77579 -18.16870 -17.99677 -17.61989 -17.29704 -16.52930 -16.04375 -15.95279 -15.81523 -15.57191 -15.40667 -15.20813 -15.08092 -14.77993 -14.66622 -14.54396 -14.35655 -13.94011 -13.89455 -13.58319 -13.48834 -13.39333 -12.97184 -12.94779 -12.89068 -12.65571 -12.52695 -12.44308 -12.24300 -11.83853 -11.82397 -11.78193 -11.69011 -11.62353 -11.55893 -11.34606 -11.29070 -10.64668 -10.53597 -10.04672 -9.81356 -9.60023 -8.19537 -6.29632 1.15464 1.41486 1.42709 1.50574 1.65595 1.69789 2.19518 2.41658 2.89830 3.14374 3.55335 3.72163 3.77994 3.80440 3.91899 4.05594 4.17091 4.28059 4.30034 4.30760 4.32460 4.33407 4.39464 4.44511 4.54827 4.65559 4.69584 4.71083 4.80609 4.83517 4.87019 4.87568 4.93328 4.98642 5.06514 5.12814 5.15188 5.26724 5.34688 5.40249 5.49195 5.50621 5.62909 5.69074 5.83304 6.11100 6.20488 6.23586 6.49221 6.63250 6.86209 7.14338 7.33745 7.39518 8.90992 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.009077 B = 0.002747 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3083.958158 B =10188.676083 C =12829.265866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 O -0.376 6.376 3 C 0.641 3.359 4 O -0.610 6.610 5 N -0.591 5.591 6 C 0.126 3.874 7 C -0.122 4.122 8 C -0.083 4.083 9 C 0.149 3.851 10 H 0.059 0.941 11 C -0.160 4.160 12 N -0.712 5.712 13 C 0.529 3.471 14 O -0.574 6.574 15 C 0.079 3.921 16 H 0.109 0.891 17 N -0.832 5.832 18 C -0.119 4.119 19 C 0.030 3.970 20 C -0.544 4.544 21 H 0.056 0.944 22 C 0.006 3.994 23 N -0.927 5.927 24 Si 0.956 3.044 25 H -0.273 1.273 26 H -0.285 1.285 27 H -0.265 1.265 28 C -0.129 4.129 29 C 0.114 3.886 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.132 0.868 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.108 0.892 36 H 0.054 0.946 37 H 0.107 0.893 38 H 0.033 0.967 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.413 0.587 42 H 0.351 0.649 43 H 0.342 0.658 44 H 0.040 0.960 45 H 0.070 0.930 46 H 0.003 0.997 47 H -0.001 1.001 48 H 0.263 0.737 49 H 0.049 0.951 50 H 0.085 0.915 51 H 0.096 0.904 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.983 17.432 9.485 24.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 O -0.290 6.290 3 C 0.396 3.604 4 O -0.502 6.502 5 N -0.331 5.331 6 C 0.005 3.995 7 C -0.161 4.161 8 C -0.102 4.102 9 C 0.045 3.955 10 H 0.077 0.923 11 C -0.218 4.218 12 N -0.364 5.364 13 C 0.315 3.685 14 O -0.453 6.453 15 C -0.036 4.036 16 H 0.127 0.873 17 N -0.363 5.363 18 C -0.158 4.158 19 C -0.007 4.007 20 C -0.582 4.582 21 H 0.074 0.926 22 C -0.193 4.193 23 N -0.567 5.567 24 Si 0.781 3.219 25 H -0.198 1.198 26 H -0.210 1.210 27 H -0.190 1.190 28 C -0.167 4.167 29 C -0.008 4.008 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.150 0.850 33 H 0.117 0.883 34 H 0.102 0.898 35 H 0.126 0.874 36 H 0.073 0.927 37 H 0.125 0.875 38 H 0.052 0.948 39 H 0.104 0.896 40 H 0.094 0.906 41 H 0.250 0.750 42 H 0.166 0.834 43 H 0.155 0.845 44 H 0.059 0.941 45 H 0.089 0.911 46 H 0.021 0.979 47 H 0.017 0.983 48 H 0.072 0.928 49 H 0.068 0.932 50 H 0.103 0.897 51 H 0.114 0.886 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.016 18.704 9.000 25.046 hybrid contribution -0.745 -2.258 -0.233 2.389 sum -14.761 16.445 8.767 23.774 Atomic orbital electron populations 1.23459 0.73030 1.05429 1.02483 1.86258 1.25625 1.30370 1.86725 1.18336 0.83888 0.82070 0.76125 1.90949 1.65136 1.36018 1.58094 1.47157 1.01310 1.09890 1.74718 1.21807 0.94990 0.82602 1.00069 1.21994 0.96734 0.99273 0.98059 1.21390 0.94849 0.94926 0.99053 1.20954 0.89981 0.85441 0.99130 0.92279 1.22189 1.00411 0.96968 1.02194 1.45939 1.46491 1.33178 1.10812 1.20644 0.80047 0.83933 0.83857 1.90624 1.64302 1.60454 1.29929 1.21443 0.93669 0.91670 0.96807 0.87272 1.58765 1.19409 1.54036 1.04082 1.22106 0.98759 0.93863 1.01108 1.18961 0.94276 0.91915 0.95530 1.21604 0.94208 0.92909 1.49459 0.92615 1.25845 0.95918 1.02636 0.94851 1.70053 1.09693 1.26727 1.50250 0.85633 0.78605 0.78652 0.78965 1.19791 1.21004 1.19002 1.21963 0.97949 0.98794 0.98040 1.21872 0.93530 0.85632 0.99778 0.91825 0.92331 0.85027 0.88337 0.89763 0.87368 0.92674 0.87478 0.94820 0.89636 0.90633 0.75018 0.83395 0.84495 0.94102 0.91123 0.97851 0.98256 0.92783 0.93240 0.89681 0.88559 0.89379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.70 10.56 113.37 1.20 1.89 16 2 O -0.38 -7.56 9.20 -55.49 -0.51 -8.07 16 3 C 0.64 14.57 8.43 129.79 1.09 15.66 16 4 O -0.61 -17.23 15.55 19.81 0.31 -16.92 16 5 N -0.59 -10.15 2.97 -949.17 -2.82 -12.97 16 6 C 0.13 1.63 6.43 86.36 0.56 2.18 16 7 C -0.12 -1.38 5.04 30.67 0.15 -1.23 16 8 C -0.08 -1.00 1.79 -10.76 -0.02 -1.02 16 9 C 0.15 2.68 2.16 44.99 0.10 2.77 16 10 H 0.06 1.43 7.58 -2.39 -0.02 1.41 16 11 C -0.16 -2.55 9.13 71.98 0.66 -1.89 16 12 N -0.71 -14.85 4.36 -442.53 -1.93 -16.78 16 13 C 0.53 15.89 7.04 87.66 0.62 16.51 16 14 O -0.57 -21.50 15.91 -3.04 -0.05 -21.55 16 15 C 0.08 2.51 3.21 44.16 0.14 2.66 16 16 H 0.11 3.16 8.14 -2.39 -0.02 3.14 16 17 N -0.83 -28.10 8.94 -171.79 -1.54 -29.63 16 18 C -0.12 -4.37 4.78 30.59 0.15 -4.23 16 19 C 0.03 1.44 4.74 29.85 0.14 1.58 16 20 C -0.54 -29.08 9.11 25.60 0.23 -28.84 16 21 H 0.06 2.89 7.74 -2.91 -0.02 2.87 16 22 C 0.01 0.33 5.46 84.66 0.46 0.79 16 23 N -0.93 -53.59 13.29 21.45 0.28 -53.31 16 24 Si 0.96 42.50 29.54 68.60 2.03 44.53 16 25 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 26 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 27 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 28 C -0.13 -1.93 5.22 30.69 0.16 -1.77 16 29 C 0.11 1.58 6.45 86.38 0.56 2.13 16 30 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.10 0.82 8.14 -2.39 -0.02 0.81 16 34 H 0.08 1.35 7.01 -2.39 -0.02 1.34 16 35 H 0.11 0.79 6.36 -2.39 -0.02 0.78 16 36 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.08 1.02 6.40 -2.39 -0.02 1.00 16 40 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.41 6.56 8.39 -92.71 -0.78 5.78 16 42 H 0.35 12.08 7.55 -89.70 -0.68 11.40 16 43 H 0.34 11.95 8.58 -89.70 -0.77 11.18 16 44 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 46 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 47 H 0.00 -0.04 6.87 -2.39 -0.02 -0.06 16 48 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 49 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 50 H 0.08 1.30 7.40 -2.39 -0.02 1.28 16 51 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 52 H 0.09 1.36 6.92 -2.39 -0.02 1.35 16 Total: -1.00 -73.73 413.72 0.69 -73.05 By element: Atomic # 1 Polarization: 35.73 SS G_CDS: -1.28 Total: 34.45 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: 6.20 Total: 7.21 kcal Atomic # 7 Polarization: -106.70 SS G_CDS: -6.00 Total: -112.70 kcal Atomic # 8 Polarization: -46.28 SS G_CDS: -0.25 Total: -46.54 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -73.73 0.69 -73.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496314720.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.258 kcal (2) G-P(sol) polarization free energy of solvation -73.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds