Wall clock time and date at job start Wed Apr 1 2020 01:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34634 * 117.00163 * 2 1 4 4 O 1.21511 * 119.99878 * 359.97438 * 3 2 1 5 5 N 1.34777 * 120.00243 * 180.02562 * 3 2 1 6 6 C 1.46927 * 120.63473 * 179.97438 * 5 3 2 7 7 C 1.53189 * 108.77629 * 233.58495 * 6 5 3 8 8 C 1.53044 * 109.30872 * 305.36041 * 7 6 5 9 9 C 1.53007 * 109.45832 * 181.38708 * 8 7 6 10 10 H 1.08997 * 109.46616 * 59.99945 * 9 8 7 11 11 C 1.52994 * 109.46901 * 300.00056 * 9 8 7 12 12 N 1.46496 * 109.46963 * 180.02562 * 9 8 7 13 13 C 1.34778 * 119.99982 * 205.00277 * 12 9 8 14 14 O 1.21287 * 119.99550 * 359.97438 * 13 12 9 15 15 C 1.50700 * 120.00347 * 180.02562 * 13 12 9 16 16 H 1.09006 * 109.46689 * 319.99501 * 15 13 12 17 17 N 1.46899 * 109.46846 * 199.99763 * 15 13 12 18 18 C 1.52996 * 109.47032 * 79.99627 * 15 13 12 19 19 C 1.52998 * 109.46929 * 185.00304 * 18 15 13 20 20 C 1.50706 * 109.47348 * 179.97438 * 19 18 15 21 21 H 1.08000 * 119.99302 * 359.97438 * 20 19 18 22 22 C 1.37871 * 120.00436 * 179.72505 * 20 19 18 23 23 N 1.31515 * 119.99684 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00405 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.46683 * 359.97438 * 24 22 20 26 26 H 1.48492 * 109.47426 * 119.99743 * 24 22 20 27 27 H 1.48501 * 109.46833 * 239.99986 * 24 22 20 28 28 C 1.53033 * 109.53868 * 61.36723 * 8 7 6 29 29 C 1.46930 * 120.62775 * 359.96862 * 5 3 2 30 30 H 1.08999 * 109.47091 * 300.00245 * 1 2 3 31 31 H 1.08999 * 109.46955 * 60.00390 * 1 2 3 32 32 H 1.08995 * 109.46718 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.58724 * 113.79366 * 6 5 3 34 34 H 1.09004 * 109.58288 * 353.37126 * 6 5 3 35 35 H 1.09000 * 109.49873 * 185.41251 * 7 6 5 36 36 H 1.08998 * 109.52819 * 65.32704 * 7 6 5 37 37 H 1.08998 * 109.46238 * 301.36057 * 8 7 6 38 38 H 1.08997 * 109.47246 * 179.97438 * 11 9 8 39 39 H 1.09002 * 109.47542 * 300.00131 * 11 9 8 40 40 H 1.09000 * 109.47390 * 59.99813 * 11 9 8 41 41 H 0.97006 * 120.00297 * 24.99725 * 12 9 8 42 42 H 1.00897 * 111.00222 * 299.99256 * 17 15 13 43 43 H 1.00891 * 111.00353 * 63.95436 * 17 15 13 44 44 H 1.09000 * 109.47441 * 65.00394 * 18 15 13 45 45 H 1.09002 * 109.47087 * 304.99840 * 18 15 13 46 46 H 1.09001 * 109.47671 * 60.00109 * 19 18 15 47 47 H 1.08998 * 109.47454 * 300.00107 * 19 18 15 48 48 H 0.97004 * 120.00247 * 180.02562 * 23 22 20 49 49 H 1.09007 * 109.50008 * 58.58503 * 28 8 7 50 50 H 1.09003 * 109.50038 * 178.68320 * 28 8 7 51 51 H 1.09000 * 109.58628 * 246.20630 * 29 5 3 52 52 H 1.08995 * 109.58500 * 6.63135 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 -0.0005 5 7 3.4092 1.2701 -0.0005 6 6 4.0907 2.5718 -0.0011 7 6 5.0817 2.6090 -1.1686 8 6 6.0235 1.4066 -1.0715 9 6 7.0369 1.4591 -2.2166 10 1 7.6154 2.3803 -2.1478 11 6 6.2966 1.4205 -3.5550 12 7 7.9382 0.3079 -2.1243 13 6 9.1724 0.3735 -2.6617 14 8 9.5368 1.3855 -3.2221 15 6 10.0994 -0.8110 -2.5672 16 1 10.0067 -1.2671 -1.5815 17 7 11.4843 -0.3664 -2.7728 18 6 9.7281 -1.8360 -3.6406 19 6 10.5860 -3.0908 -3.4660 20 6 10.2198 -4.1008 -4.5228 21 1 9.4517 -3.8708 -5.2464 22 6 10.8689 -5.3163 -4.5692 23 7 11.8080 -5.5941 -3.6914 24 14 10.4156 -6.5679 -5.8797 25 1 9.3377 -6.0162 -6.7392 26 1 11.6084 -6.8675 -6.7118 27 1 9.9398 -7.8152 -5.2293 28 6 5.2126 0.1123 -1.1674 29 6 4.2229 0.0467 -0.0004 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0276 0.0005 33 1 4.6276 2.7036 0.9383 34 1 3.3563 3.3686 -0.1196 35 1 5.6623 3.5304 -1.1238 36 1 4.5359 2.5684 -2.1113 37 1 6.5510 1.4345 -0.1181 38 1 7.0185 1.4584 -4.3708 39 1 5.7180 0.4993 -3.6238 40 1 5.6257 2.2768 -3.6239 41 1 7.6467 -0.5017 -1.6763 42 1 11.5962 0.0603 -3.6802 43 1 11.7750 0.2623 -2.0392 44 1 9.9055 -1.4091 -4.6277 45 1 8.6749 -2.0994 -3.5426 46 1 10.4085 -3.5178 -2.4789 47 1 11.6391 -2.8275 -3.5639 48 1 12.2650 -6.4491 -3.7242 49 1 4.6650 0.0949 -2.1098 50 1 5.8863 -0.7434 -1.1217 51 1 4.7706 -0.0277 0.9391 52 1 3.5759 -0.8224 -0.1185 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496314721.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:40:57 Heat of formation + Delta-G solvation = -134.772671 kcal Electronic energy + Delta-G solvation = -30565.974136 eV Core-core repulsion = 26371.741784 eV Total energy + Delta-G solvation = -4194.232351 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.10710 -40.13073 -38.86298 -36.85789 -35.88101 -35.09635 -33.00165 -32.79493 -31.56054 -30.16621 -29.99428 -27.99072 -26.53686 -25.78282 -24.10385 -23.82614 -22.72882 -21.11703 -20.55223 -19.81795 -19.69061 -18.40879 -17.48616 -17.16370 -16.86793 -16.43343 -16.06988 -15.45592 -15.29618 -15.17529 -14.89381 -14.75468 -14.54106 -14.36062 -14.06443 -13.82698 -13.70985 -13.40126 -13.31072 -12.93321 -12.61348 -12.40750 -12.34917 -12.28887 -12.13141 -12.02142 -11.54557 -11.40582 -11.20373 -11.14320 -11.03255 -10.92541 -10.88254 -10.67459 -10.58519 -10.53024 -10.11411 -9.81606 -9.38580 -9.23984 -9.05949 -8.99589 -8.36020 -8.21136 -5.95338 -3.97431 1.76385 2.43517 2.77682 3.21939 3.32586 3.40401 3.44071 3.49002 4.21186 4.28576 4.37369 4.48767 4.60184 4.75834 4.78425 4.82775 4.84846 4.88140 5.01389 5.05493 5.08658 5.13757 5.16890 5.30122 5.34141 5.39504 5.40362 5.42276 5.50692 5.52969 5.56667 5.68744 5.82063 5.85710 5.87771 5.90431 6.03264 6.19041 6.40888 6.50494 6.64352 6.90177 7.07365 7.37262 7.59642 7.74760 7.79095 7.88228 7.94943 8.11715 8.32488 8.47054 9.10863 9.65903 11.15563 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.011751 B = 0.002292 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.283038 B =12213.963345 C =13948.032243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.370 6.370 3 C 0.649 3.351 4 O -0.576 6.576 5 N -0.592 5.592 6 C 0.128 3.872 7 C -0.130 4.130 8 C -0.095 4.095 9 C 0.147 3.853 10 H 0.086 0.914 11 C -0.167 4.167 12 N -0.727 5.727 13 C 0.484 3.516 14 O -0.554 6.554 15 C 0.078 3.922 16 H 0.097 0.903 17 N -0.807 5.807 18 C -0.094 4.094 19 C 0.031 3.969 20 C -0.521 4.521 21 H 0.052 0.948 22 C 0.057 3.943 23 N -0.892 5.892 24 Si 0.888 3.112 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.285 1.285 28 C -0.137 4.137 29 C 0.112 3.888 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.103 0.897 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.400 0.600 42 H 0.348 0.652 43 H 0.333 0.667 44 H 0.052 0.948 45 H 0.052 0.948 46 H 0.012 0.988 47 H 0.035 0.965 48 H 0.259 0.741 49 H 0.077 0.923 50 H 0.081 0.919 51 H 0.073 0.927 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.085 15.096 10.757 26.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.283 6.283 3 C 0.404 3.596 4 O -0.465 6.465 5 N -0.333 5.333 6 C 0.007 3.993 7 C -0.168 4.168 8 C -0.114 4.114 9 C 0.042 3.958 10 H 0.104 0.896 11 C -0.225 4.225 12 N -0.380 5.380 13 C 0.270 3.730 14 O -0.432 6.432 15 C -0.038 4.038 16 H 0.115 0.885 17 N -0.335 5.335 18 C -0.133 4.133 19 C -0.006 4.006 20 C -0.560 4.560 21 H 0.070 0.930 22 C -0.144 4.144 23 N -0.532 5.532 24 Si 0.716 3.284 25 H -0.199 1.199 26 H -0.211 1.211 27 H -0.211 1.211 28 C -0.175 4.175 29 C -0.011 4.011 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.121 0.879 33 H 0.092 0.908 34 H 0.115 0.885 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.236 0.764 42 H 0.162 0.838 43 H 0.145 0.855 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.031 0.969 47 H 0.053 0.947 48 H 0.068 0.932 49 H 0.096 0.904 50 H 0.100 0.900 51 H 0.092 0.908 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -18.759 15.186 10.470 26.309 hybrid contribution -0.931 -0.191 -0.589 1.118 sum -19.691 14.995 9.881 26.650 Atomic orbital electron populations 1.23208 0.74348 1.03583 1.02689 1.86244 1.24193 1.30942 1.86970 1.18048 0.83174 0.82168 0.76224 1.90988 1.64251 1.34999 1.56281 1.46928 1.01859 1.08705 1.75821 1.21666 0.95258 0.83679 0.98727 1.22031 0.97104 0.98488 0.99222 1.21427 0.95557 0.95294 0.99117 1.20871 0.90114 0.90517 0.94347 0.89607 1.22277 1.00639 1.02095 0.97503 1.46311 1.14905 1.17387 1.59408 1.22745 0.82595 0.90888 0.76762 1.90642 1.76042 1.33199 1.43286 1.21839 0.86666 0.92328 1.02969 0.88548 1.58989 1.18687 1.47723 1.08103 1.21644 1.00176 0.96144 0.95307 1.19020 0.95932 0.89197 0.96476 1.21312 1.20157 1.00121 1.14367 0.92970 1.24993 0.95135 0.98325 0.95918 1.69985 1.24494 1.23086 1.35608 0.86601 0.78311 0.81496 0.81953 1.19868 1.21060 1.21106 1.22087 0.98075 0.97995 0.99312 1.21772 0.93841 0.86459 0.98980 0.91894 0.91846 0.87863 0.90830 0.88458 0.89854 0.90541 0.90081 0.92008 0.92073 0.91792 0.76398 0.83841 0.85500 0.92908 0.92885 0.96917 0.94666 0.93157 0.90433 0.90043 0.90848 0.88698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.36 10.56 101.05 1.07 1.42 16 2 O -0.37 -3.39 9.20 -40.31 -0.37 -3.76 16 3 C 0.65 6.87 8.43 54.06 0.46 7.33 16 4 O -0.58 -7.64 15.55 -19.28 -0.30 -7.94 16 5 N -0.59 -4.91 2.97 -178.58 -0.53 -5.44 16 6 C 0.13 0.89 6.43 -3.71 -0.02 0.87 16 7 C -0.13 -0.82 4.97 -26.61 -0.13 -0.95 16 8 C -0.09 -0.64 2.14 -90.58 -0.19 -0.84 16 9 C 0.15 1.39 2.40 -67.93 -0.16 1.23 16 10 H 0.09 0.95 7.58 -51.93 -0.39 0.56 16 11 C -0.17 -1.67 8.78 37.15 0.33 -1.34 16 12 N -0.73 -8.01 5.00 -53.81 -0.27 -8.28 16 13 C 0.48 7.11 7.03 -10.98 -0.08 7.03 16 14 O -0.55 -9.70 15.91 5.55 0.09 -9.61 16 15 C 0.08 1.25 3.15 -68.87 -0.22 1.03 16 16 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 17 N -0.81 -13.26 8.44 -5.65 -0.05 -13.31 16 18 C -0.09 -1.84 4.78 -26.73 -0.13 -1.97 16 19 C 0.03 0.77 4.86 -27.88 -0.14 0.64 16 20 C -0.52 -14.53 9.11 -34.44 -0.31 -14.84 16 21 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 22 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 23 N -0.89 -26.65 13.29 55.43 0.74 -25.92 16 24 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 25 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 26 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 27 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 28 C -0.14 -0.90 4.81 -26.64 -0.13 -1.03 16 29 C 0.11 0.73 6.44 -3.73 -0.02 0.71 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.10 0.79 7.00 -51.93 -0.36 0.42 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.55 6.51 -51.93 -0.34 0.21 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.59 6.46 -51.93 -0.34 0.25 16 40 H 0.06 0.54 6.46 -51.93 -0.34 0.21 16 41 H 0.40 3.72 6.84 -40.82 -0.28 3.44 16 42 H 0.35 5.84 8.58 -39.29 -0.34 5.50 16 43 H 0.33 4.73 9.06 -39.30 -0.36 4.37 16 44 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 46 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.03 0.96 7.75 -51.93 -0.40 0.56 16 48 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 49 H 0.08 0.59 6.51 -51.93 -0.34 0.25 16 50 H 0.08 0.50 6.46 -51.93 -0.34 0.16 16 51 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 52 H 0.09 0.63 6.93 -51.93 -0.36 0.27 16 LS Contribution 410.46 15.07 6.19 6.19 Total: -1.00 -34.93 410.46 -8.10 -43.03 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -8.79 Total: 7.71 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: 0.22 Total: 0.82 kcal Atomic # 7 Polarization: -52.84 SS G_CDS: -0.11 Total: -52.95 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.58 Total: -21.31 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -34.93 -8.10 -43.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496314721.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.743 kcal (2) G-P(sol) polarization free energy of solvation -34.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds