Wall clock time and date at job start Wed Apr 1 2020 01:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34634 * 117.00163 * 2 1 4 4 O 1.21511 * 119.99878 * 359.97438 * 3 2 1 5 5 N 1.34777 * 120.00243 * 180.02562 * 3 2 1 6 6 C 1.46927 * 120.63473 * 179.97438 * 5 3 2 7 7 C 1.53189 * 108.77629 * 233.58495 * 6 5 3 8 8 C 1.53044 * 109.30872 * 305.36041 * 7 6 5 9 9 C 1.53007 * 109.45832 * 181.38708 * 8 7 6 10 10 H 1.08997 * 109.46616 * 59.99945 * 9 8 7 11 11 C 1.52994 * 109.46901 * 300.00056 * 9 8 7 12 12 N 1.46496 * 109.46963 * 180.02562 * 9 8 7 13 13 C 1.34778 * 119.99982 * 205.00277 * 12 9 8 14 14 O 1.21287 * 119.99550 * 359.97438 * 13 12 9 15 15 C 1.50700 * 120.00347 * 180.02562 * 13 12 9 16 16 H 1.09006 * 109.46689 * 319.99501 * 15 13 12 17 17 N 1.46899 * 109.46846 * 199.99763 * 15 13 12 18 18 C 1.52996 * 109.47032 * 79.99627 * 15 13 12 19 19 C 1.52998 * 109.46929 * 185.00304 * 18 15 13 20 20 C 1.50706 * 109.47348 * 179.97438 * 19 18 15 21 21 H 1.08000 * 119.99302 * 359.97438 * 20 19 18 22 22 C 1.37871 * 120.00436 * 179.72505 * 20 19 18 23 23 N 1.31515 * 119.99684 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00405 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.46683 * 359.97438 * 24 22 20 26 26 H 1.48492 * 109.47426 * 119.99743 * 24 22 20 27 27 H 1.48501 * 109.46833 * 239.99986 * 24 22 20 28 28 C 1.53033 * 109.53868 * 61.36723 * 8 7 6 29 29 C 1.46930 * 120.62775 * 359.96862 * 5 3 2 30 30 H 1.08999 * 109.47091 * 300.00245 * 1 2 3 31 31 H 1.08999 * 109.46955 * 60.00390 * 1 2 3 32 32 H 1.08995 * 109.46718 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.58724 * 113.79366 * 6 5 3 34 34 H 1.09004 * 109.58288 * 353.37126 * 6 5 3 35 35 H 1.09000 * 109.49873 * 185.41251 * 7 6 5 36 36 H 1.08998 * 109.52819 * 65.32704 * 7 6 5 37 37 H 1.08998 * 109.46238 * 301.36057 * 8 7 6 38 38 H 1.08997 * 109.47246 * 179.97438 * 11 9 8 39 39 H 1.09002 * 109.47542 * 300.00131 * 11 9 8 40 40 H 1.09000 * 109.47390 * 59.99813 * 11 9 8 41 41 H 0.97006 * 120.00297 * 24.99725 * 12 9 8 42 42 H 1.00897 * 111.00222 * 299.99256 * 17 15 13 43 43 H 1.00891 * 111.00353 * 63.95436 * 17 15 13 44 44 H 1.09000 * 109.47441 * 65.00394 * 18 15 13 45 45 H 1.09002 * 109.47087 * 304.99840 * 18 15 13 46 46 H 1.09001 * 109.47671 * 60.00109 * 19 18 15 47 47 H 1.08998 * 109.47454 * 300.00107 * 19 18 15 48 48 H 0.97004 * 120.00247 * 180.02562 * 23 22 20 49 49 H 1.09007 * 109.50008 * 58.58503 * 28 8 7 50 50 H 1.09003 * 109.50038 * 178.68320 * 28 8 7 51 51 H 1.09000 * 109.58628 * 246.20630 * 29 5 3 52 52 H 1.08995 * 109.58500 * 6.63135 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4015 2.2187 -0.0005 5 7 3.4092 1.2701 -0.0005 6 6 4.0907 2.5718 -0.0011 7 6 5.0817 2.6090 -1.1686 8 6 6.0235 1.4066 -1.0715 9 6 7.0369 1.4591 -2.2166 10 1 7.6154 2.3803 -2.1478 11 6 6.2966 1.4205 -3.5550 12 7 7.9382 0.3079 -2.1243 13 6 9.1724 0.3735 -2.6617 14 8 9.5368 1.3855 -3.2221 15 6 10.0994 -0.8110 -2.5672 16 1 10.0067 -1.2671 -1.5815 17 7 11.4843 -0.3664 -2.7728 18 6 9.7281 -1.8360 -3.6406 19 6 10.5860 -3.0908 -3.4660 20 6 10.2198 -4.1008 -4.5228 21 1 9.4517 -3.8708 -5.2464 22 6 10.8689 -5.3163 -4.5692 23 7 11.8080 -5.5941 -3.6914 24 14 10.4156 -6.5679 -5.8797 25 1 9.3377 -6.0162 -6.7392 26 1 11.6084 -6.8675 -6.7118 27 1 9.9398 -7.8152 -5.2293 28 6 5.2126 0.1123 -1.1674 29 6 4.2229 0.0467 -0.0004 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0276 0.0005 33 1 4.6276 2.7036 0.9383 34 1 3.3563 3.3686 -0.1196 35 1 5.6623 3.5304 -1.1238 36 1 4.5359 2.5684 -2.1113 37 1 6.5510 1.4345 -0.1181 38 1 7.0185 1.4584 -4.3708 39 1 5.7180 0.4993 -3.6238 40 1 5.6257 2.2768 -3.6239 41 1 7.6467 -0.5017 -1.6763 42 1 11.5962 0.0603 -3.6802 43 1 11.7750 0.2623 -2.0392 44 1 9.9055 -1.4091 -4.6277 45 1 8.6749 -2.0994 -3.5426 46 1 10.4085 -3.5178 -2.4789 47 1 11.6391 -2.8275 -3.5639 48 1 12.2650 -6.4491 -3.7242 49 1 4.6650 0.0949 -2.1098 50 1 5.8863 -0.7434 -1.1217 51 1 4.7706 -0.0277 0.9391 52 1 3.5759 -0.8224 -0.1185 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496314721.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:40:56 Heat of formation + Delta-G solvation = -160.263176 kcal Electronic energy + Delta-G solvation = -30567.079487 eV Core-core repulsion = 26371.741784 eV Total energy + Delta-G solvation = -4195.337702 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.81802 -41.16370 -39.66176 -37.63108 -36.90832 -36.45148 -34.78400 -33.82331 -32.11926 -31.89114 -30.88056 -28.54988 -28.11845 -26.59811 -25.50832 -24.47673 -23.67428 -22.36725 -21.63253 -21.06770 -20.36635 -19.09013 -18.65812 -18.17706 -17.97049 -17.55801 -17.36179 -16.76568 -16.44602 -15.98223 -15.86472 -15.80346 -15.45336 -15.20794 -15.05489 -14.95843 -14.49356 -14.31145 -14.26412 -14.09357 -13.75673 -13.65787 -13.36862 -13.22401 -13.07021 -12.93859 -12.81778 -12.81318 -12.48985 -12.20962 -12.02962 -11.86183 -11.80908 -11.78503 -11.71716 -11.61821 -11.49065 -11.22334 -11.20252 -10.94090 -10.47587 -10.11009 -9.81947 -9.56216 -8.12363 -6.22106 1.15272 1.42179 1.43530 1.55124 1.58490 1.67036 2.22289 2.45889 2.91219 3.20898 3.56821 3.62553 3.70006 3.79695 3.90570 4.06261 4.14163 4.18748 4.31457 4.32623 4.34939 4.35956 4.36936 4.43052 4.50347 4.63349 4.70226 4.80349 4.81306 4.82129 4.82842 4.90843 4.94217 4.99141 5.01988 5.16629 5.19638 5.27131 5.28964 5.45516 5.48856 5.55941 5.59799 5.87822 6.01471 6.14655 6.22054 6.32803 6.50712 6.59186 6.97155 7.15542 7.22801 7.46005 8.98932 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.011751 B = 0.002292 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.283038 B =12213.963345 C =13948.032243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 O -0.374 6.374 3 C 0.642 3.358 4 O -0.611 6.611 5 N -0.589 5.589 6 C 0.127 3.873 7 C -0.123 4.123 8 C -0.083 4.083 9 C 0.149 3.851 10 H 0.074 0.926 11 C -0.163 4.163 12 N -0.710 5.710 13 C 0.490 3.510 14 O -0.583 6.583 15 C 0.084 3.916 16 H 0.111 0.889 17 N -0.821 5.821 18 C -0.081 4.081 19 C 0.039 3.961 20 C -0.540 4.540 21 H 0.055 0.945 22 C 0.002 3.998 23 N -0.929 5.929 24 Si 0.958 3.042 25 H -0.264 1.264 26 H -0.283 1.283 27 H -0.277 1.277 28 C -0.134 4.134 29 C 0.113 3.887 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.133 0.867 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.067 0.933 37 H 0.095 0.905 38 H 0.031 0.969 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.412 0.588 42 H 0.344 0.656 43 H 0.346 0.654 44 H 0.038 0.962 45 H 0.068 0.932 46 H -0.004 1.004 47 H 0.004 0.996 48 H 0.261 0.739 49 H 0.068 0.932 50 H 0.090 0.910 51 H 0.091 0.909 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.300 14.720 11.273 27.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 O -0.287 6.287 3 C 0.397 3.603 4 O -0.503 6.503 5 N -0.330 5.330 6 C 0.006 3.994 7 C -0.162 4.162 8 C -0.102 4.102 9 C 0.044 3.956 10 H 0.092 0.908 11 C -0.221 4.221 12 N -0.363 5.363 13 C 0.276 3.724 14 O -0.463 6.463 15 C -0.031 4.031 16 H 0.129 0.871 17 N -0.349 5.349 18 C -0.119 4.119 19 C 0.002 3.998 20 C -0.579 4.579 21 H 0.073 0.927 22 C -0.196 4.196 23 N -0.570 5.570 24 Si 0.783 3.217 25 H -0.188 1.188 26 H -0.209 1.209 27 H -0.203 1.203 28 C -0.172 4.172 29 C -0.009 4.009 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.151 0.849 33 H 0.110 0.890 34 H 0.102 0.898 35 H 0.114 0.886 36 H 0.086 0.914 37 H 0.113 0.887 38 H 0.050 0.950 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.249 0.751 42 H 0.157 0.843 43 H 0.159 0.841 44 H 0.057 0.943 45 H 0.087 0.913 46 H 0.014 0.986 47 H 0.023 0.977 48 H 0.070 0.930 49 H 0.086 0.914 50 H 0.109 0.891 51 H 0.109 0.891 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -19.998 14.794 11.010 27.203 hybrid contribution -0.571 -0.076 -0.729 0.930 sum -20.570 14.718 10.280 27.302 Atomic orbital electron populations 1.23460 0.73050 1.05468 1.02419 1.86248 1.25554 1.30198 1.86720 1.18319 0.83829 0.82094 0.76092 1.90958 1.65173 1.36131 1.58054 1.47111 1.01310 1.09765 1.74767 1.21748 0.94950 0.82859 0.99811 1.21979 0.96788 0.98881 0.98549 1.21343 0.94865 0.95651 0.98362 1.20943 0.90099 0.89229 0.95299 0.90794 1.22241 1.00157 1.03119 0.96618 1.46191 1.13785 1.18345 1.57993 1.22290 0.83396 0.89867 0.76881 1.90639 1.76793 1.34084 1.44792 1.21646 0.87028 0.92214 1.02253 0.87079 1.58965 1.19222 1.48311 1.08442 1.21373 0.99939 0.94686 0.95914 1.18831 0.95090 0.91035 0.94858 1.21757 1.20132 1.00993 1.14973 0.92722 1.25880 0.95028 1.00568 0.98146 1.70108 1.25623 1.23821 1.37441 0.85512 0.78172 0.78879 0.79142 1.18849 1.20855 1.20257 1.22069 0.98068 0.98115 0.98952 1.21877 0.93602 0.85708 0.99714 0.92037 0.92315 0.84890 0.88982 0.89804 0.88603 0.91411 0.88693 0.94953 0.91580 0.90274 0.75053 0.84277 0.84053 0.94282 0.91316 0.98575 0.97733 0.92974 0.91350 0.89131 0.89081 0.88723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.58 10.56 113.37 1.20 1.78 16 2 O -0.37 -6.45 9.20 -55.43 -0.51 -6.96 16 3 C 0.64 13.10 8.43 129.79 1.09 14.19 16 4 O -0.61 -16.22 15.55 19.81 0.31 -15.91 16 5 N -0.59 -8.79 2.97 -949.33 -2.82 -11.61 16 6 C 0.13 1.54 6.43 86.36 0.56 2.10 16 7 C -0.12 -1.30 4.97 30.67 0.15 -1.15 16 8 C -0.08 -0.90 2.14 -10.77 -0.02 -0.93 16 9 C 0.15 2.54 2.40 44.99 0.11 2.65 16 10 H 0.07 1.52 7.58 -2.39 -0.02 1.50 16 11 C -0.16 -3.06 8.78 71.98 0.63 -2.43 16 12 N -0.71 -14.20 5.00 -442.53 -2.21 -16.41 16 13 C 0.49 13.79 7.03 87.66 0.62 14.40 16 14 O -0.58 -20.04 15.91 -3.05 -0.05 -20.09 16 15 C 0.08 2.63 3.15 44.17 0.14 2.76 16 16 H 0.11 3.13 8.14 -2.38 -0.02 3.11 16 17 N -0.82 -26.83 8.44 -171.80 -1.45 -28.28 16 18 C -0.08 -3.12 4.78 30.59 0.15 -2.98 16 19 C 0.04 1.98 4.86 29.85 0.15 2.12 16 20 C -0.54 -30.16 9.11 25.60 0.23 -29.93 16 21 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 22 C 0.00 0.09 5.46 84.65 0.46 0.55 16 23 N -0.93 -56.00 13.29 21.45 0.28 -55.71 16 24 Si 0.96 43.93 29.54 68.60 2.03 45.96 16 25 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 26 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 27 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 28 C -0.13 -1.41 4.81 30.66 0.15 -1.26 16 29 C 0.11 1.19 6.44 86.35 0.56 1.75 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.08 1.29 7.00 -2.38 -0.02 1.28 16 35 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.07 0.86 6.51 -2.39 -0.02 0.84 16 37 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.07 1.17 6.46 -2.39 -0.02 1.15 16 40 H 0.08 1.23 6.46 -2.39 -0.02 1.22 16 41 H 0.41 6.49 6.84 -92.70 -0.63 5.85 16 42 H 0.34 11.67 8.58 -89.70 -0.77 10.90 16 43 H 0.35 9.62 9.06 -89.70 -0.81 8.81 16 44 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 46 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 47 H 0.00 0.24 7.75 -2.39 -0.02 0.22 16 48 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 49 H 0.07 0.88 6.51 -2.38 -0.02 0.87 16 50 H 0.09 0.82 6.46 -2.39 -0.02 0.80 16 51 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 52 H 0.09 1.05 6.93 -2.39 -0.02 1.03 16 Total: -1.00 -76.18 410.46 0.47 -75.71 By element: Atomic # 1 Polarization: 30.94 SS G_CDS: -1.27 Total: 29.67 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: 6.16 Total: 3.64 kcal Atomic # 7 Polarization: -105.82 SS G_CDS: -6.20 Total: -112.02 kcal Atomic # 8 Polarization: -42.71 SS G_CDS: -0.25 Total: -42.96 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -76.18 0.47 -75.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496314721.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.554 kcal (2) G-P(sol) polarization free energy of solvation -76.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds