Wall clock time and date at job start Wed Apr 1 2020 01:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34637 * 116.99825 * 2 1 4 4 O 1.21516 * 120.00045 * 0.02562 * 3 2 1 5 5 N 1.34780 * 120.00137 * 179.97438 * 3 2 1 6 6 C 1.46915 * 120.63410 * 179.97438 * 5 3 2 7 7 C 1.53188 * 108.77883 * 233.59393 * 6 5 3 8 8 C 1.53037 * 109.31291 * 305.36155 * 7 6 5 9 9 C 1.52999 * 109.46720 * 181.38244 * 8 7 6 10 10 H 1.08999 * 109.47014 * 299.98167 * 9 8 7 11 11 C 1.53008 * 109.46675 * 59.97748 * 9 8 7 12 12 N 1.46499 * 109.47493 * 179.97438 * 9 8 7 13 13 C 1.34777 * 119.99665 * 155.28120 * 12 9 8 14 14 O 1.21283 * 119.99990 * 359.71991 * 13 12 9 15 15 C 1.50698 * 119.99538 * 179.72653 * 13 12 9 16 16 H 1.08994 * 109.47374 * 39.99639 * 15 13 12 17 17 N 1.46899 * 109.46954 * 159.99915 * 15 13 12 18 18 C 1.53003 * 109.47045 * 279.99176 * 15 13 12 19 19 C 1.53000 * 109.47286 * 174.99954 * 18 15 13 20 20 C 1.50701 * 109.47289 * 180.02562 * 19 18 15 21 21 H 1.08003 * 119.99592 * 0.02562 * 20 19 18 22 22 C 1.37879 * 119.99954 * 180.02562 * 20 19 18 23 23 N 1.31509 * 119.99592 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 120.00097 * 0.02562 * 22 20 19 25 25 H 1.48506 * 109.47034 * 89.99894 * 24 22 20 26 26 H 1.48491 * 109.47029 * 209.99874 * 24 22 20 27 27 H 1.48498 * 109.46964 * 330.00019 * 24 22 20 28 28 C 1.53049 * 109.52457 * 61.37066 * 8 7 6 29 29 C 1.46929 * 120.62588 * 359.97438 * 5 3 2 30 30 H 1.08994 * 109.47224 * 59.99763 * 1 2 3 31 31 H 1.09004 * 109.47260 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46951 * 300.00005 * 1 2 3 33 33 H 1.09007 * 109.58813 * 113.80041 * 6 5 3 34 34 H 1.09006 * 109.58862 * 353.37844 * 6 5 3 35 35 H 1.09004 * 109.50062 * 185.41511 * 7 6 5 36 36 H 1.08992 * 109.52847 * 65.33169 * 7 6 5 37 37 H 1.09004 * 109.46274 * 301.36483 * 8 7 6 38 38 H 1.09000 * 109.47169 * 59.99905 * 11 9 8 39 39 H 1.08995 * 109.47066 * 180.02562 * 11 9 8 40 40 H 1.09005 * 109.46722 * 300.00264 * 11 9 8 41 41 H 0.97001 * 119.99790 * 334.99833 * 12 9 8 42 42 H 1.00900 * 110.99932 * 296.04066 * 17 15 13 43 43 H 1.00903 * 111.00374 * 59.99775 * 17 15 13 44 44 H 1.08994 * 109.47574 * 295.00663 * 18 15 13 45 45 H 1.09004 * 109.46944 * 55.00483 * 18 15 13 46 46 H 1.08994 * 109.47393 * 300.00821 * 19 18 15 47 47 H 1.09004 * 109.46697 * 60.00377 * 19 18 15 48 48 H 0.97005 * 119.99751 * 179.97438 * 23 22 20 49 49 H 1.09004 * 109.49685 * 58.58399 * 28 8 7 50 50 H 1.08997 * 109.49854 * 178.67779 * 28 8 7 51 51 H 1.09003 * 109.58477 * 246.19279 * 29 5 3 52 52 H 1.08997 * 109.59138 * 6.47962 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4013 2.2187 0.0005 5 7 3.4091 1.2703 0.0005 6 6 4.0905 2.5719 0.0000 7 6 5.0823 2.6088 -1.1669 8 6 6.0241 1.4065 -1.0689 9 6 7.0382 1.4586 -2.2133 10 1 6.5115 1.4304 -3.1672 11 6 7.8498 2.7522 -2.1170 12 7 7.9403 0.3081 -2.1193 13 6 8.5668 -0.1488 -3.2217 14 8 8.3798 0.3894 -4.2924 15 6 9.4994 -1.3284 -3.1239 16 1 9.0780 -2.0695 -2.4448 17 7 9.6738 -1.9264 -4.4543 18 6 10.8565 -0.8629 -2.5923 19 6 11.7627 -2.0764 -2.3749 20 6 13.0991 -1.6179 -1.8507 21 1 13.2835 -0.5662 -1.6884 22 6 14.0864 -2.5411 -1.5784 23 7 15.2524 -2.1410 -1.1204 24 14 13.7676 -4.3600 -1.8598 25 1 14.1571 -4.7221 -3.2463 26 1 14.5680 -5.1576 -0.8964 27 1 12.3241 -4.6462 -1.6605 28 6 5.2130 0.1122 -1.1651 29 6 4.2229 0.0469 0.0017 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 4.6268 2.7040 0.9397 34 1 3.3563 3.3687 -0.1193 35 1 5.6629 3.5302 -1.1220 36 1 4.5372 2.5680 -2.1098 37 1 6.5510 1.4347 -0.1151 38 1 8.3765 2.7804 -1.1631 39 1 8.5720 2.7896 -2.9325 40 1 7.1786 3.6082 -2.1869 41 1 8.0898 -0.1222 -1.2630 42 1 8.8025 -2.2998 -4.7999 43 1 10.0635 -1.2587 -5.1027 44 1 11.3181 -0.1894 -3.3144 45 1 10.7162 -0.3402 -1.6461 46 1 11.3011 -2.7498 -1.6528 47 1 11.9030 -2.5991 -3.3211 48 1 15.9469 -2.7905 -0.9284 49 1 4.6661 0.0948 -2.1079 50 1 5.8865 -0.7435 -1.1189 51 1 4.7700 -0.0272 0.9415 52 1 3.5758 -0.8226 -0.1139 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496314722.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:41:01 Heat of formation + Delta-G solvation = -134.330786 kcal Electronic energy + Delta-G solvation = -30488.819986 eV Core-core repulsion = 26294.606796 eV Total energy + Delta-G solvation = -4194.213190 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.11606 -40.15892 -38.86300 -36.87218 -35.96129 -35.21658 -33.04717 -32.76458 -31.67271 -30.51268 -30.23986 -28.02890 -26.83371 -25.83732 -24.13217 -23.47326 -22.39223 -21.07434 -20.61987 -20.22992 -19.79304 -18.55990 -17.48077 -17.19054 -16.95713 -16.69171 -16.39815 -15.57071 -15.32558 -15.10289 -14.79582 -14.62106 -14.53790 -14.24333 -14.11291 -13.92912 -13.72883 -13.50607 -13.25192 -12.99095 -12.87982 -12.60289 -12.45006 -12.36312 -12.30042 -11.84543 -11.72210 -11.69415 -11.18808 -11.12282 -11.07777 -11.01276 -10.96620 -10.87307 -10.72841 -10.34905 -10.01746 -9.72816 -9.60213 -9.26238 -9.12689 -9.10435 -8.52183 -8.39736 -6.00583 -3.98182 1.72913 2.40080 2.70223 3.15827 3.36430 3.43020 3.45204 3.47983 4.15444 4.24818 4.36252 4.50056 4.56672 4.72928 4.74960 4.79564 4.80608 4.84787 4.95962 4.97376 5.05254 5.08621 5.17088 5.24923 5.31118 5.33737 5.36977 5.38339 5.42716 5.48274 5.54422 5.63377 5.66795 5.76134 5.85815 5.94575 5.99231 6.12577 6.27570 6.43371 6.47952 6.86256 6.86854 7.24002 7.37031 7.49969 7.57101 7.64936 7.84758 7.85264 8.25583 8.56795 9.04106 9.62410 11.12850 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016538 B = 0.002060 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.710251 B =13587.074885 C =14023.942432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.371 6.371 3 C 0.649 3.351 4 O -0.575 6.575 5 N -0.593 5.593 6 C 0.127 3.873 7 C -0.130 4.130 8 C -0.096 4.096 9 C 0.146 3.854 10 H 0.084 0.916 11 C -0.166 4.166 12 N -0.725 5.725 13 C 0.486 3.514 14 O -0.552 6.552 15 C 0.075 3.925 16 H 0.097 0.903 17 N -0.812 5.812 18 C -0.087 4.087 19 C -0.004 4.004 20 C -0.521 4.521 21 H 0.068 0.932 22 C 0.065 3.935 23 N -0.906 5.906 24 Si 0.883 3.117 25 H -0.277 1.277 26 H -0.291 1.291 27 H -0.264 1.264 28 C -0.130 4.130 29 C 0.111 3.889 30 H 0.063 0.937 31 H 0.103 0.897 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.401 0.599 42 H 0.335 0.665 43 H 0.350 0.650 44 H 0.058 0.942 45 H 0.059 0.941 46 H 0.012 0.988 47 H 0.029 0.971 48 H 0.262 0.738 49 H 0.069 0.931 50 H 0.082 0.918 51 H 0.074 0.926 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.742 6.025 3.328 29.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.284 6.284 3 C 0.403 3.597 4 O -0.464 6.464 5 N -0.334 5.334 6 C 0.006 3.994 7 C -0.168 4.168 8 C -0.115 4.115 9 C 0.041 3.959 10 H 0.103 0.897 11 C -0.225 4.225 12 N -0.378 5.378 13 C 0.271 3.729 14 O -0.429 6.429 15 C -0.041 4.041 16 H 0.115 0.885 17 N -0.340 5.340 18 C -0.125 4.125 19 C -0.042 4.042 20 C -0.559 4.559 21 H 0.087 0.913 22 C -0.136 4.136 23 N -0.545 5.545 24 Si 0.711 3.289 25 H -0.203 1.203 26 H -0.217 1.217 27 H -0.189 1.189 28 C -0.168 4.168 29 C -0.011 4.011 30 H 0.081 0.919 31 H 0.121 0.879 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.116 0.884 35 H 0.106 0.894 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.236 0.764 42 H 0.146 0.854 43 H 0.164 0.836 44 H 0.077 0.923 45 H 0.078 0.922 46 H 0.031 0.969 47 H 0.047 0.953 48 H 0.072 0.928 49 H 0.088 0.912 50 H 0.101 0.899 51 H 0.092 0.908 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -28.469 6.107 2.957 29.266 hybrid contribution -0.720 -0.342 0.014 0.797 sum -29.188 5.765 2.971 29.900 Atomic orbital electron populations 1.23207 0.74356 1.03549 1.02731 1.86237 1.24198 1.31000 1.87010 1.18054 0.83190 0.82155 0.76252 1.90992 1.64241 1.34974 1.56239 1.46944 1.01851 1.08749 1.75809 1.21684 0.95256 0.83622 0.98805 1.22036 0.96999 0.98733 0.99045 1.21456 0.95535 0.95186 0.99311 1.20907 0.89917 0.86012 0.99023 0.89745 1.22242 1.00692 0.96722 1.02810 1.46229 1.46838 1.33156 1.11541 1.22590 0.80403 0.86218 0.83665 1.90654 1.63906 1.59918 1.28471 1.21858 0.96319 0.92042 0.93910 0.88530 1.59027 1.31379 1.39867 1.03689 1.21458 0.91067 1.00499 0.99467 1.19480 0.94470 0.93150 0.97053 1.21178 0.96100 0.95465 1.43170 0.91336 1.25026 0.94910 0.99021 0.94637 1.69925 1.04452 1.34465 1.45686 0.86724 0.78671 0.85432 0.78092 1.20307 1.21740 1.18905 1.21982 0.97851 0.98207 0.98796 1.21782 0.93816 0.86423 0.99075 0.91852 0.87894 0.91850 0.90682 0.88440 0.89388 0.91020 0.89929 0.92137 0.91876 0.91635 0.76408 0.85371 0.83619 0.92300 0.92207 0.96944 0.95271 0.92848 0.91241 0.89942 0.90781 0.88864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.33 10.56 101.05 1.07 1.40 16 2 O -0.37 -3.27 9.20 -40.32 -0.37 -3.65 16 3 C 0.65 6.74 8.43 54.06 0.46 7.19 16 4 O -0.58 -7.54 15.55 -19.28 -0.30 -7.83 16 5 N -0.59 -4.82 2.97 -178.58 -0.53 -5.35 16 6 C 0.13 0.87 6.43 -3.72 -0.02 0.84 16 7 C -0.13 -0.80 5.04 -26.62 -0.13 -0.93 16 8 C -0.10 -0.62 1.79 -90.58 -0.16 -0.78 16 9 C 0.15 1.33 2.16 -67.93 -0.15 1.18 16 10 H 0.08 0.94 7.58 -51.93 -0.39 0.54 16 11 C -0.17 -1.56 9.13 37.16 0.34 -1.22 16 12 N -0.73 -7.46 4.36 -53.80 -0.23 -7.70 16 13 C 0.49 6.72 7.03 -10.99 -0.08 6.64 16 14 O -0.55 -9.30 15.92 5.55 0.09 -9.21 16 15 C 0.07 1.10 3.15 -68.86 -0.22 0.89 16 16 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 17 N -0.81 -12.25 8.44 -5.66 -0.05 -12.30 16 18 C -0.09 -1.61 4.78 -26.73 -0.13 -1.74 16 19 C 0.00 -0.09 3.93 -27.88 -0.11 -0.20 16 20 C -0.52 -14.65 9.66 -34.44 -0.33 -14.99 16 21 H 0.07 2.08 7.99 -52.48 -0.42 1.66 16 22 C 0.06 1.88 5.47 -17.82 -0.10 1.79 16 23 N -0.91 -27.91 13.96 55.43 0.77 -27.13 16 24 Si 0.88 21.79 27.47 -169.99 -4.67 17.12 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 27 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 28 C -0.13 -0.83 5.22 -26.62 -0.14 -0.97 16 29 C 0.11 0.70 6.45 -3.72 -0.02 0.67 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.10 0.78 7.00 -51.93 -0.36 0.41 16 35 H 0.09 0.45 6.36 -51.93 -0.33 0.12 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.49 6.40 -51.93 -0.33 0.16 16 41 H 0.40 3.39 8.39 -40.82 -0.34 3.04 16 42 H 0.33 4.33 9.06 -39.29 -0.36 3.97 16 43 H 0.35 5.47 8.58 -39.29 -0.34 5.13 16 44 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 45 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.01 0.28 7.20 -51.93 -0.37 -0.09 16 47 H 0.03 0.69 7.18 -51.93 -0.37 0.32 16 48 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 49 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.08 0.50 7.41 -51.93 -0.38 0.12 16 51 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 52 H 0.09 0.59 6.93 -51.93 -0.36 0.23 16 LS Contribution 412.06 15.07 6.21 6.21 Total: -1.00 -35.62 412.06 -7.84 -43.45 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -9.03 Total: 6.60 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: 0.27 Total: -0.22 kcal Atomic # 7 Polarization: -52.43 SS G_CDS: -0.04 Total: -52.47 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -0.58 Total: -20.69 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -35.62 -7.84 -43.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496314722.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.876 kcal (2) G-P(sol) polarization free energy of solvation -35.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds