Wall clock time and date at job start Wed Apr 1 2020 01:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34637 * 116.99825 * 2 1 4 4 O 1.21516 * 120.00045 * 0.02562 * 3 2 1 5 5 N 1.34780 * 120.00137 * 179.97438 * 3 2 1 6 6 C 1.46915 * 120.63410 * 179.97438 * 5 3 2 7 7 C 1.53188 * 108.77883 * 233.59393 * 6 5 3 8 8 C 1.53037 * 109.31291 * 305.36155 * 7 6 5 9 9 C 1.52999 * 109.46720 * 181.38244 * 8 7 6 10 10 H 1.08999 * 109.47014 * 299.98167 * 9 8 7 11 11 C 1.53008 * 109.46675 * 59.97748 * 9 8 7 12 12 N 1.46499 * 109.47493 * 179.97438 * 9 8 7 13 13 C 1.34777 * 119.99665 * 155.28120 * 12 9 8 14 14 O 1.21283 * 119.99990 * 359.71991 * 13 12 9 15 15 C 1.50698 * 119.99538 * 179.72653 * 13 12 9 16 16 H 1.08994 * 109.47374 * 39.99639 * 15 13 12 17 17 N 1.46899 * 109.46954 * 159.99915 * 15 13 12 18 18 C 1.53003 * 109.47045 * 279.99176 * 15 13 12 19 19 C 1.53000 * 109.47286 * 174.99954 * 18 15 13 20 20 C 1.50701 * 109.47289 * 180.02562 * 19 18 15 21 21 H 1.08003 * 119.99592 * 0.02562 * 20 19 18 22 22 C 1.37879 * 119.99954 * 180.02562 * 20 19 18 23 23 N 1.31509 * 119.99592 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 120.00097 * 0.02562 * 22 20 19 25 25 H 1.48506 * 109.47034 * 89.99894 * 24 22 20 26 26 H 1.48491 * 109.47029 * 209.99874 * 24 22 20 27 27 H 1.48498 * 109.46964 * 330.00019 * 24 22 20 28 28 C 1.53049 * 109.52457 * 61.37066 * 8 7 6 29 29 C 1.46929 * 120.62588 * 359.97438 * 5 3 2 30 30 H 1.08994 * 109.47224 * 59.99763 * 1 2 3 31 31 H 1.09004 * 109.47260 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46951 * 300.00005 * 1 2 3 33 33 H 1.09007 * 109.58813 * 113.80041 * 6 5 3 34 34 H 1.09006 * 109.58862 * 353.37844 * 6 5 3 35 35 H 1.09004 * 109.50062 * 185.41511 * 7 6 5 36 36 H 1.08992 * 109.52847 * 65.33169 * 7 6 5 37 37 H 1.09004 * 109.46274 * 301.36483 * 8 7 6 38 38 H 1.09000 * 109.47169 * 59.99905 * 11 9 8 39 39 H 1.08995 * 109.47066 * 180.02562 * 11 9 8 40 40 H 1.09005 * 109.46722 * 300.00264 * 11 9 8 41 41 H 0.97001 * 119.99790 * 334.99833 * 12 9 8 42 42 H 1.00900 * 110.99932 * 296.04066 * 17 15 13 43 43 H 1.00903 * 111.00374 * 59.99775 * 17 15 13 44 44 H 1.08994 * 109.47574 * 295.00663 * 18 15 13 45 45 H 1.09004 * 109.46944 * 55.00483 * 18 15 13 46 46 H 1.08994 * 109.47393 * 300.00821 * 19 18 15 47 47 H 1.09004 * 109.46697 * 60.00377 * 19 18 15 48 48 H 0.97005 * 119.99751 * 179.97438 * 23 22 20 49 49 H 1.09004 * 109.49685 * 58.58399 * 28 8 7 50 50 H 1.08997 * 109.49854 * 178.67779 * 28 8 7 51 51 H 1.09003 * 109.58477 * 246.19279 * 29 5 3 52 52 H 1.08997 * 109.59138 * 6.47962 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4013 2.2187 0.0005 5 7 3.4091 1.2703 0.0005 6 6 4.0905 2.5719 0.0000 7 6 5.0823 2.6088 -1.1669 8 6 6.0241 1.4065 -1.0689 9 6 7.0382 1.4586 -2.2133 10 1 6.5115 1.4304 -3.1672 11 6 7.8498 2.7522 -2.1170 12 7 7.9403 0.3081 -2.1193 13 6 8.5668 -0.1488 -3.2217 14 8 8.3798 0.3894 -4.2924 15 6 9.4994 -1.3284 -3.1239 16 1 9.0780 -2.0695 -2.4448 17 7 9.6738 -1.9264 -4.4543 18 6 10.8565 -0.8629 -2.5923 19 6 11.7627 -2.0764 -2.3749 20 6 13.0991 -1.6179 -1.8507 21 1 13.2835 -0.5662 -1.6884 22 6 14.0864 -2.5411 -1.5784 23 7 15.2524 -2.1410 -1.1204 24 14 13.7676 -4.3600 -1.8598 25 1 14.1571 -4.7221 -3.2463 26 1 14.5680 -5.1576 -0.8964 27 1 12.3241 -4.6462 -1.6605 28 6 5.2130 0.1122 -1.1651 29 6 4.2229 0.0469 0.0017 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 4.6268 2.7040 0.9397 34 1 3.3563 3.3687 -0.1193 35 1 5.6629 3.5302 -1.1220 36 1 4.5372 2.5680 -2.1098 37 1 6.5510 1.4347 -0.1151 38 1 8.3765 2.7804 -1.1631 39 1 8.5720 2.7896 -2.9325 40 1 7.1786 3.6082 -2.1869 41 1 8.0898 -0.1222 -1.2630 42 1 8.8025 -2.2998 -4.7999 43 1 10.0635 -1.2587 -5.1027 44 1 11.3181 -0.1894 -3.3144 45 1 10.7162 -0.3402 -1.6461 46 1 11.3011 -2.7498 -1.6528 47 1 11.9030 -2.5991 -3.3211 48 1 15.9469 -2.7905 -0.9284 49 1 4.6661 0.0948 -2.1079 50 1 5.8865 -0.7435 -1.1189 51 1 4.7700 -0.0272 0.9415 52 1 3.5758 -0.8226 -0.1139 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496314722.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:41:00 Heat of formation + Delta-G solvation = -161.108436 kcal Electronic energy + Delta-G solvation = -30489.981152 eV Core-core repulsion = 26294.606796 eV Total energy + Delta-G solvation = -4195.374356 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.80346 -41.15005 -39.59794 -37.62394 -36.95546 -36.47355 -34.75476 -33.82364 -32.25998 -32.20494 -31.03451 -28.56456 -28.34825 -26.56001 -25.36958 -24.23719 -23.21199 -22.17602 -21.68034 -21.30516 -20.68845 -19.24096 -18.90346 -18.21238 -18.02876 -17.62961 -17.44326 -16.76589 -16.27632 -15.99452 -15.85563 -15.47203 -15.35741 -15.17814 -15.03890 -14.98286 -14.69938 -14.57990 -14.38490 -13.95771 -13.91288 -13.61377 -13.57331 -13.44294 -13.00340 -12.95717 -12.80136 -12.54798 -12.44817 -12.25985 -11.90804 -11.85103 -11.82698 -11.76884 -11.66422 -11.60077 -11.57200 -11.35988 -11.24530 -11.05223 -10.69006 -10.08543 -9.83376 -9.60398 -8.22819 -6.25788 1.13890 1.43407 1.44618 1.57080 1.58839 1.65220 2.23455 2.43237 2.89937 3.13965 3.52347 3.60831 3.70739 3.79280 3.92312 4.03874 4.13055 4.25645 4.30297 4.31750 4.32069 4.33527 4.35915 4.41307 4.52207 4.65149 4.67357 4.74824 4.77689 4.81615 4.85716 4.87298 4.89280 4.96818 5.01531 5.12092 5.18510 5.25517 5.29930 5.37576 5.47964 5.53695 5.58679 5.68790 5.75773 6.11400 6.20549 6.35002 6.50033 6.59956 6.83107 7.13852 7.24689 7.38639 8.93931 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016538 B = 0.002060 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.710251 B =13587.074885 C =14023.942432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 O -0.374 6.374 3 C 0.641 3.359 4 O -0.611 6.611 5 N -0.591 5.591 6 C 0.126 3.874 7 C -0.123 4.123 8 C -0.085 4.085 9 C 0.149 3.851 10 H 0.064 0.936 11 C -0.164 4.164 12 N -0.709 5.709 13 C 0.489 3.511 14 O -0.585 6.585 15 C 0.084 3.916 16 H 0.122 0.878 17 N -0.821 5.821 18 C -0.078 4.078 19 C 0.002 3.998 20 C -0.530 4.530 21 H 0.028 0.972 22 C 0.000 4.000 23 N -0.955 5.955 24 Si 0.954 3.046 25 H -0.275 1.275 26 H -0.288 1.288 27 H -0.239 1.239 28 C -0.125 4.125 29 C 0.112 3.888 30 H 0.057 0.943 31 H 0.134 0.866 32 H 0.061 0.939 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.102 0.898 36 H 0.057 0.943 37 H 0.102 0.898 38 H 0.069 0.931 39 H 0.029 0.971 40 H 0.084 0.916 41 H 0.414 0.586 42 H 0.348 0.652 43 H 0.344 0.656 44 H 0.036 0.964 45 H 0.068 0.932 46 H 0.026 0.974 47 H 0.025 0.975 48 H 0.264 0.736 49 H 0.053 0.947 50 H 0.092 0.908 51 H 0.094 0.906 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.426 4.328 4.342 31.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 O -0.287 6.287 3 C 0.396 3.604 4 O -0.503 6.503 5 N -0.331 5.331 6 C 0.006 3.994 7 C -0.161 4.161 8 C -0.104 4.104 9 C 0.045 3.955 10 H 0.082 0.918 11 C -0.222 4.222 12 N -0.361 5.361 13 C 0.274 3.726 14 O -0.465 6.465 15 C -0.032 4.032 16 H 0.140 0.860 17 N -0.349 5.349 18 C -0.117 4.117 19 C -0.035 4.035 20 C -0.568 4.568 21 H 0.046 0.954 22 C -0.196 4.196 23 N -0.596 5.596 24 Si 0.778 3.222 25 H -0.200 1.200 26 H -0.214 1.214 27 H -0.162 1.162 28 C -0.163 4.163 29 C -0.009 4.009 30 H 0.076 0.924 31 H 0.152 0.848 32 H 0.080 0.920 33 H 0.114 0.886 34 H 0.101 0.899 35 H 0.120 0.880 36 H 0.076 0.924 37 H 0.120 0.880 38 H 0.088 0.912 39 H 0.048 0.952 40 H 0.103 0.897 41 H 0.251 0.749 42 H 0.161 0.839 43 H 0.158 0.842 44 H 0.055 0.945 45 H 0.086 0.914 46 H 0.044 0.956 47 H 0.043 0.957 48 H 0.073 0.927 49 H 0.071 0.929 50 H 0.110 0.890 51 H 0.112 0.888 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -30.179 4.397 4.002 30.759 hybrid contribution -0.185 0.283 -0.292 0.447 sum -30.364 4.680 3.709 30.946 Atomic orbital electron populations 1.23467 0.73019 1.05521 1.02412 1.86242 1.25587 1.30169 1.86741 1.18335 0.83856 0.82112 0.76110 1.90961 1.65185 1.36146 1.58046 1.47142 1.01335 1.09860 1.74753 1.21773 0.94938 0.82807 0.99927 1.21982 0.96743 0.99275 0.98144 1.21389 0.94830 0.95363 0.98831 1.20936 0.89963 0.85322 0.99308 0.91798 1.22223 1.00435 0.97663 1.01887 1.46111 1.45830 1.32980 1.11178 1.22317 0.80533 0.85805 0.83944 1.90651 1.65193 1.60737 1.29940 1.21682 0.94308 0.93005 0.94219 0.86020 1.59021 1.32375 1.39800 1.03749 1.21247 0.92426 0.98375 0.99612 1.19371 0.92653 0.94910 0.96574 1.21575 0.98700 0.93753 1.42734 0.95384 1.26029 0.94541 1.04550 0.94442 1.70086 1.05763 1.36342 1.47442 0.85600 0.79938 0.78762 0.77918 1.20008 1.21420 1.16188 1.21936 0.97824 0.98440 0.98145 1.21899 0.93565 0.85638 0.99807 0.92373 0.84759 0.92041 0.88639 0.89903 0.88000 0.92427 0.87954 0.91205 0.95155 0.89695 0.74857 0.83869 0.84247 0.94545 0.91354 0.95599 0.95660 0.92732 0.92857 0.88990 0.88796 0.88815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.54 10.56 113.37 1.20 1.74 16 2 O -0.37 -6.22 9.20 -55.46 -0.51 -6.73 16 3 C 0.64 12.90 8.43 129.79 1.09 13.99 16 4 O -0.61 -16.13 15.55 19.79 0.31 -15.82 16 5 N -0.59 -8.65 2.97 -949.30 -2.82 -11.48 16 6 C 0.13 1.50 6.43 86.36 0.56 2.05 16 7 C -0.12 -1.27 5.04 30.67 0.15 -1.12 16 8 C -0.09 -0.86 1.79 -10.77 -0.02 -0.88 16 9 C 0.15 2.45 2.16 44.99 0.10 2.55 16 10 H 0.06 1.37 7.58 -2.39 -0.02 1.35 16 11 C -0.16 -2.84 9.13 71.98 0.66 -2.18 16 12 N -0.71 -12.97 4.36 -442.52 -1.93 -14.90 16 13 C 0.49 12.76 7.03 87.66 0.62 13.38 16 14 O -0.58 -19.43 15.92 -3.04 -0.05 -19.48 16 15 C 0.08 2.29 3.15 44.17 0.14 2.43 16 16 H 0.12 2.76 8.14 -2.39 -0.02 2.74 16 17 N -0.82 -23.34 8.44 -171.81 -1.45 -24.79 16 18 C -0.08 -2.82 4.78 30.60 0.15 -2.67 16 19 C 0.00 0.11 3.93 29.85 0.12 0.22 16 20 C -0.53 -30.06 9.66 25.60 0.25 -29.81 16 21 H 0.03 1.76 7.99 -2.91 -0.02 1.73 16 22 C 0.00 0.02 5.47 84.66 0.46 0.49 16 23 N -0.96 -59.95 13.96 21.45 0.30 -59.65 16 24 Si 0.95 44.13 27.47 68.60 1.88 46.02 16 25 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 26 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 27 H -0.24 -9.98 6.54 99.48 0.65 -9.33 16 28 C -0.13 -1.29 5.22 30.67 0.16 -1.13 16 29 C 0.11 1.11 6.45 86.35 0.56 1.67 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.13 0.56 8.14 -2.38 -0.02 0.54 16 32 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.10 0.77 8.14 -2.38 -0.02 0.75 16 34 H 0.08 1.27 7.00 -2.38 -0.02 1.25 16 35 H 0.10 0.79 6.36 -2.39 -0.02 0.77 16 36 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.10 0.73 8.14 -2.39 -0.02 0.72 16 38 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.08 1.12 6.40 -2.38 -0.02 1.10 16 41 H 0.41 5.54 8.39 -92.71 -0.78 4.76 16 42 H 0.35 8.27 9.06 -89.69 -0.81 7.46 16 43 H 0.34 10.53 8.58 -89.69 -0.77 9.76 16 44 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 46 H 0.03 1.09 7.20 -2.39 -0.02 1.07 16 47 H 0.03 1.15 7.18 -2.38 -0.02 1.13 16 48 H 0.26 15.49 8.31 -92.70 -0.77 14.72 16 49 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 50 H 0.09 0.80 7.41 -2.39 -0.02 0.78 16 51 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 52 H 0.09 0.96 6.93 -2.39 -0.02 0.94 16 Total: -1.00 -79.53 412.06 0.44 -79.09 By element: Atomic # 1 Polarization: 28.46 SS G_CDS: -1.48 Total: 26.99 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: 6.18 Total: 0.73 kcal Atomic # 7 Polarization: -104.91 SS G_CDS: -5.90 Total: -110.81 kcal Atomic # 8 Polarization: -41.77 SS G_CDS: -0.25 Total: -42.02 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.88 Total: 46.02 kcal Total: -79.53 0.44 -79.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496314722.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.014 kcal (2) G-P(sol) polarization free energy of solvation -79.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds