Wall clock time and date at job start Wed Apr 1 2020 01:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.87109 * 2 1 4 4 C 1.54316 * 109.88385 * 121.01512 * 2 1 3 5 5 H 1.08999 * 110.87697 * 215.81297 * 4 2 1 6 6 N 1.46500 * 110.72232 * 339.02071 * 4 2 1 7 7 C 1.34778 * 119.99959 * 199.97718 * 6 4 2 8 8 O 1.21512 * 120.00144 * 359.97438 * 7 6 4 9 9 O 1.34640 * 119.99817 * 179.97438 * 7 6 4 10 10 C 1.45199 * 116.99935 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47141 * 59.99876 * 10 9 7 12 12 C 1.52995 * 109.47469 * 179.97438 * 10 9 7 13 13 C 1.52997 * 109.47067 * 300.00264 * 10 9 7 14 14 C 1.55158 * 102.94139 * 97.38021 * 4 2 1 15 15 C 1.54917 * 101.57978 * 35.50252 * 14 4 2 16 16 N 1.47020 * 110.01051 * 238.90671 * 2 1 3 17 17 C 1.34776 * 125.65281 * 59.48427 * 16 2 1 18 18 O 1.21590 * 119.99510 * 359.97438 * 17 16 2 19 19 N 1.34777 * 120.00490 * 179.97438 * 17 16 2 20 20 C 1.46496 * 120.00311 * 180.02562 * 19 17 16 21 21 C 1.52998 * 109.46925 * 179.97438 * 20 19 17 22 22 C 1.50710 * 109.46859 * 179.97438 * 21 20 19 23 23 H 1.07997 * 119.99562 * 0.02562 * 22 21 20 24 24 C 1.37874 * 119.99878 * 179.97438 * 22 21 20 25 25 N 1.31518 * 120.00157 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00142 * 179.97438 * 24 22 21 27 27 H 1.48508 * 109.46722 * 60.00266 * 26 24 22 28 28 H 1.48495 * 109.47514 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47188 * 300.00847 * 26 24 22 30 30 H 1.09005 * 109.46851 * 298.98311 * 1 2 3 31 31 H 1.08999 * 109.47141 * 58.98238 * 1 2 3 32 32 H 1.09001 * 109.46987 * 178.98227 * 1 2 3 33 33 H 0.96999 * 119.99851 * 19.96909 * 6 4 2 34 34 H 1.08998 * 109.47087 * 59.99670 * 11 10 9 35 35 H 1.08996 * 109.47346 * 180.02562 * 11 10 9 36 36 H 1.09009 * 109.47304 * 300.00216 * 11 10 9 37 37 H 1.09005 * 109.46824 * 59.99317 * 12 10 9 38 38 H 1.08992 * 109.47343 * 180.02562 * 12 10 9 39 39 H 1.09008 * 109.46785 * 300.00398 * 12 10 9 40 40 H 1.08998 * 109.47588 * 59.99640 * 13 10 9 41 41 H 1.09004 * 109.47228 * 179.97438 * 13 10 9 42 42 H 1.09007 * 109.46974 * 299.99669 * 13 10 9 43 43 H 1.08998 * 111.00511 * 277.42784 * 14 4 2 44 44 H 1.09006 * 111.00657 * 153.57417 * 14 4 2 45 45 H 1.08998 * 110.36726 * 81.82993 * 15 14 4 46 46 H 1.09005 * 110.36534 * 204.15515 * 15 14 4 47 47 H 0.97002 * 119.99560 * 359.97438 * 19 17 16 48 48 H 1.09001 * 109.47156 * 299.99482 * 20 19 17 49 49 H 1.08998 * 109.47226 * 59.99568 * 20 19 17 50 50 H 1.08994 * 109.47435 * 300.00053 * 21 20 19 51 51 H 1.09005 * 109.47249 * 60.00313 * 21 20 19 52 52 H 0.97001 * 120.00315 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7477 1.2437 5 1 2.9637 -0.2805 1.6231 6 7 1.0281 -0.8027 2.2872 7 6 1.3798 -1.0366 3.5671 8 8 2.5485 -1.2023 3.8554 9 8 0.4362 -1.0865 4.5261 10 6 0.8874 -1.3431 5.8822 11 6 1.8553 -0.2400 6.3148 12 6 -0.3170 -1.3628 6.8254 13 6 1.5996 -2.6961 5.9352 14 6 2.3558 -2.1673 0.6944 15 6 2.8619 -1.8471 -0.7343 16 7 2.0331 -0.7134 -1.1830 17 6 1.7794 -0.3850 -2.4652 18 8 1.0790 0.5758 -2.7195 19 7 2.3021 -1.1215 -3.4657 20 6 2.0268 -0.7641 -4.8595 21 6 2.7340 -1.7527 -5.7886 22 6 2.4502 -1.3855 -7.2225 23 1 1.8281 -0.5320 -7.4483 24 6 2.9857 -2.1384 -8.2459 25 7 3.7437 -3.1773 -7.9708 26 14 2.6334 -1.6836 -10.0231 27 1 3.1304 -0.3099 -10.2903 28 1 3.3199 -2.6430 -10.9250 29 1 1.1695 -1.7364 -10.2667 30 1 -0.3633 0.4980 0.8990 31 1 -0.3633 0.5296 -0.8807 32 1 -0.3633 -1.0275 -0.0183 33 1 0.0951 -0.6706 2.0569 34 1 1.3480 0.7240 6.2770 35 1 2.1945 -0.4328 7.3326 36 1 2.7136 -0.2255 5.6429 37 1 -1.0070 -2.1484 6.5172 38 1 0.0218 -1.5549 7.8434 39 1 -0.8240 -0.3986 6.7874 40 1 2.4578 -2.6817 5.2633 41 1 1.9388 -2.8885 6.9531 42 1 0.9100 -3.4821 5.6270 43 1 1.4505 -2.7735 0.6615 44 1 3.1313 -2.6577 1.2829 45 1 3.9135 -1.5617 -0.7091 46 1 2.7165 -2.7060 -1.3896 47 1 2.8612 -1.8877 -3.2628 48 1 0.9523 -0.8015 -5.0387 49 1 2.3929 0.2437 -5.0553 50 1 3.8084 -1.7150 -5.6093 51 1 2.3681 -2.7607 -5.5929 52 1 4.1202 -3.7073 -8.6908 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496352900.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:19:23 Heat of formation + Delta-G solvation = -111.289740 kcal Electronic energy + Delta-G solvation = -30340.970314 eV Core-core repulsion = 26147.756260 eV Total energy + Delta-G solvation = -4193.214055 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.25115 -40.31395 -38.45697 -37.04512 -34.87039 -34.83348 -34.07517 -32.84157 -31.39880 -30.73538 -29.02057 -27.80497 -27.75031 -26.17905 -24.86255 -23.24005 -22.95930 -21.16865 -20.56998 -20.33003 -19.44596 -18.69331 -17.89903 -17.01776 -16.42615 -16.40567 -16.21238 -15.61143 -15.29500 -15.10497 -14.75964 -14.58359 -14.42948 -14.09242 -13.88529 -13.56825 -13.36994 -13.12050 -12.89328 -12.88548 -12.67343 -12.41068 -12.34138 -12.28635 -12.28087 -12.23120 -12.00340 -11.78929 -11.65303 -11.27408 -11.19089 -11.06760 -11.00712 -10.72376 -10.64598 -10.36129 -10.31302 -9.90259 -9.55912 -9.50783 -9.27389 -8.78343 -8.46287 -8.22252 -6.08714 -4.11494 1.76606 2.51696 2.78610 3.31839 3.35633 3.39111 3.51185 3.78893 4.02272 4.28090 4.31878 4.35916 4.37423 4.50766 4.51428 4.71345 4.83095 4.99763 5.07416 5.11132 5.14834 5.17261 5.28316 5.29636 5.29897 5.36376 5.43888 5.45424 5.47040 5.59232 5.61866 5.72286 5.80296 5.90533 5.90906 6.04699 6.09034 6.18415 6.24708 6.39123 6.42371 6.76418 6.98657 7.06114 7.24080 7.55662 7.63062 7.89994 8.05757 8.24335 8.36027 8.91555 8.97028 9.53192 11.02835 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.034805 B = 0.001712 C = 0.001671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.284737 B =16352.299224 C =16751.189771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.153 3.847 3 H 0.084 0.916 4 C 0.156 3.844 5 H 0.109 0.891 6 N -0.703 5.703 7 C 0.652 3.348 8 O -0.566 6.566 9 O -0.365 6.365 10 C 0.137 3.863 11 C -0.184 4.184 12 C -0.141 4.141 13 C -0.184 4.184 14 C -0.142 4.142 15 C 0.099 3.901 16 N -0.638 5.638 17 C 0.720 3.280 18 O -0.591 6.591 19 N -0.735 5.735 20 C 0.140 3.860 21 C 0.013 3.987 22 C -0.521 4.521 23 H 0.059 0.941 24 C 0.059 3.941 25 N -0.894 5.894 26 Si 0.898 3.102 27 H -0.276 1.276 28 H -0.287 1.287 29 H -0.276 1.276 30 H 0.064 0.936 31 H 0.086 0.914 32 H 0.060 0.940 33 H 0.410 0.590 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.067 0.933 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.088 0.912 41 H 0.070 0.930 42 H 0.059 0.941 43 H 0.081 0.919 44 H 0.091 0.909 45 H 0.073 0.927 46 H 0.080 0.920 47 H 0.393 0.607 48 H 0.054 0.946 49 H 0.054 0.946 50 H 0.022 0.978 51 H 0.022 0.978 52 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.053 1.364 31.242 31.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.048 3.952 3 H 0.102 0.898 4 C 0.051 3.949 5 H 0.127 0.873 6 N -0.365 5.365 7 C 0.405 3.595 8 O -0.455 6.455 9 O -0.280 6.280 10 C 0.100 3.900 11 C -0.241 4.241 12 C -0.199 4.199 13 C -0.241 4.241 14 C -0.182 4.182 15 C -0.024 4.024 16 N -0.378 5.378 17 C 0.422 3.578 18 O -0.470 6.470 19 N -0.389 5.389 20 C 0.018 3.982 21 C -0.024 4.024 22 C -0.560 4.560 23 H 0.077 0.923 24 C -0.143 4.143 25 N -0.533 5.533 26 Si 0.725 3.275 27 H -0.201 1.201 28 H -0.213 1.213 29 H -0.201 1.201 30 H 0.082 0.918 31 H 0.105 0.895 32 H 0.079 0.921 33 H 0.249 0.751 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.107 0.893 37 H 0.086 0.914 38 H 0.099 0.901 39 H 0.086 0.914 40 H 0.107 0.893 41 H 0.089 0.911 42 H 0.079 0.921 43 H 0.100 0.900 44 H 0.110 0.890 45 H 0.091 0.909 46 H 0.098 0.902 47 H 0.227 0.773 48 H 0.073 0.927 49 H 0.073 0.927 50 H 0.040 0.960 51 H 0.040 0.960 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.935 1.875 31.056 31.501 hybrid contribution -0.192 -0.279 -0.938 0.998 sum -5.128 1.596 30.117 30.592 Atomic orbital electron populations 1.22206 0.94856 1.02732 1.03403 1.21313 0.94930 0.95928 0.83074 0.89843 1.21930 0.90793 0.96665 0.85535 0.87289 1.44972 1.12028 1.75655 1.03853 1.18066 0.83407 0.76246 0.81784 1.90905 1.17920 1.54901 1.81808 1.86305 1.38805 1.84810 1.18075 1.22080 0.95210 0.95929 0.76792 1.22524 1.00887 0.97719 1.02982 1.21869 0.96717 1.03422 0.97849 1.22519 1.02431 0.95291 1.03847 1.23224 1.02854 0.96743 0.95332 1.22266 0.95320 0.89791 0.95062 1.47557 1.54439 1.32073 1.03745 1.15517 0.80548 0.82826 0.78935 1.90881 1.43488 1.30199 1.82409 1.45567 1.54284 1.32482 1.06548 1.21614 1.00178 0.99954 0.76503 1.19323 0.95847 0.93905 0.93360 1.21010 1.31313 1.13306 0.90394 0.92260 1.24990 0.94930 0.94905 0.99432 1.69946 1.33169 1.17541 1.32652 0.86566 0.78549 0.78290 0.84079 1.20107 1.21266 1.20127 0.91756 0.89546 0.92091 0.75073 0.92153 0.91125 0.89304 0.91429 0.90100 0.91441 0.89289 0.91130 0.92145 0.90041 0.89044 0.90910 0.90162 0.77337 0.92737 0.92710 0.95956 0.96000 0.92812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.76 7.96 37.16 0.30 -1.47 16 2 C 0.15 1.64 3.47 -66.96 -0.23 1.40 16 3 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 4 C 0.16 1.37 3.11 -66.10 -0.21 1.17 16 5 H 0.11 1.01 7.69 -51.93 -0.40 0.61 16 6 N -0.70 -5.90 4.97 -56.94 -0.28 -6.19 16 7 C 0.65 6.52 8.05 54.06 0.44 6.96 16 8 O -0.57 -6.70 11.61 -19.28 -0.22 -6.92 16 9 O -0.37 -3.36 9.94 -40.33 -0.40 -3.76 16 10 C 0.14 1.02 1.13 -90.62 -0.10 0.92 16 11 C -0.18 -1.35 8.37 37.16 0.31 -1.04 16 12 C -0.14 -0.73 8.85 37.16 0.33 -0.40 16 13 C -0.18 -1.35 8.37 37.16 0.31 -1.04 16 14 C -0.14 -1.20 6.77 -24.58 -0.17 -1.36 16 15 C 0.10 0.97 6.57 -2.53 -0.02 0.96 16 16 N -0.64 -8.24 3.08 -168.69 -0.52 -8.76 16 17 C 0.72 12.57 8.27 -86.92 -0.72 11.85 16 18 O -0.59 -12.36 15.25 5.29 0.08 -12.28 16 19 N -0.74 -13.10 5.52 -65.23 -0.36 -13.46 16 20 C 0.14 3.00 5.61 -4.04 -0.02 2.98 16 21 C 0.01 0.33 5.09 -27.88 -0.14 0.18 16 22 C -0.52 -14.45 9.11 -34.44 -0.31 -14.76 16 23 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 24 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 25 N -0.89 -26.03 13.29 55.43 0.74 -25.29 16 26 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 29 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 30 H 0.06 0.49 6.67 -51.93 -0.35 0.14 16 31 H 0.09 1.16 6.77 -51.93 -0.35 0.80 16 32 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 33 H 0.41 2.95 5.84 -40.82 -0.24 2.71 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.09 0.85 5.88 -51.92 -0.31 0.55 16 37 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.07 0.34 8.14 -51.92 -0.42 -0.09 16 40 H 0.09 0.85 5.88 -51.93 -0.31 0.54 16 41 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 46 H 0.08 0.76 7.30 -51.93 -0.38 0.39 16 47 H 0.39 6.15 6.95 -40.82 -0.28 5.86 16 48 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 49 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 50 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 51 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 52 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 409.96 15.07 6.18 6.18 Total: -1.00 -32.93 409.96 -9.06 -41.99 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -8.91 Total: 4.26 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: -0.34 Total: 7.91 kcal Atomic # 7 Polarization: -53.28 SS G_CDS: -0.43 Total: -53.70 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -0.54 Total: -22.97 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -32.93 -9.06 -41.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496352900.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.299 kcal (2) G-P(sol) polarization free energy of solvation -32.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds