Wall clock time and date at job start Wed Apr 1 2020 01:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.87109 * 2 1 4 4 C 1.54316 * 109.88385 * 121.01512 * 2 1 3 5 5 H 1.08999 * 110.87697 * 215.81297 * 4 2 1 6 6 N 1.46500 * 110.72232 * 339.02071 * 4 2 1 7 7 C 1.34778 * 119.99959 * 199.97718 * 6 4 2 8 8 O 1.21512 * 120.00144 * 359.97438 * 7 6 4 9 9 O 1.34640 * 119.99817 * 179.97438 * 7 6 4 10 10 C 1.45199 * 116.99935 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47141 * 59.99876 * 10 9 7 12 12 C 1.52995 * 109.47469 * 179.97438 * 10 9 7 13 13 C 1.52997 * 109.47067 * 300.00264 * 10 9 7 14 14 C 1.55158 * 102.94139 * 97.38021 * 4 2 1 15 15 C 1.54917 * 101.57978 * 35.50252 * 14 4 2 16 16 N 1.47020 * 110.01051 * 238.90671 * 2 1 3 17 17 C 1.34776 * 125.65281 * 59.48427 * 16 2 1 18 18 O 1.21590 * 119.99510 * 359.97438 * 17 16 2 19 19 N 1.34777 * 120.00490 * 179.97438 * 17 16 2 20 20 C 1.46496 * 120.00311 * 180.02562 * 19 17 16 21 21 C 1.52998 * 109.46925 * 179.97438 * 20 19 17 22 22 C 1.50710 * 109.46859 * 179.97438 * 21 20 19 23 23 H 1.07997 * 119.99562 * 0.02562 * 22 21 20 24 24 C 1.37874 * 119.99878 * 179.97438 * 22 21 20 25 25 N 1.31518 * 120.00157 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00142 * 179.97438 * 24 22 21 27 27 H 1.48508 * 109.46722 * 60.00266 * 26 24 22 28 28 H 1.48495 * 109.47514 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47188 * 300.00847 * 26 24 22 30 30 H 1.09005 * 109.46851 * 298.98311 * 1 2 3 31 31 H 1.08999 * 109.47141 * 58.98238 * 1 2 3 32 32 H 1.09001 * 109.46987 * 178.98227 * 1 2 3 33 33 H 0.96999 * 119.99851 * 19.96909 * 6 4 2 34 34 H 1.08998 * 109.47087 * 59.99670 * 11 10 9 35 35 H 1.08996 * 109.47346 * 180.02562 * 11 10 9 36 36 H 1.09009 * 109.47304 * 300.00216 * 11 10 9 37 37 H 1.09005 * 109.46824 * 59.99317 * 12 10 9 38 38 H 1.08992 * 109.47343 * 180.02562 * 12 10 9 39 39 H 1.09008 * 109.46785 * 300.00398 * 12 10 9 40 40 H 1.08998 * 109.47588 * 59.99640 * 13 10 9 41 41 H 1.09004 * 109.47228 * 179.97438 * 13 10 9 42 42 H 1.09007 * 109.46974 * 299.99669 * 13 10 9 43 43 H 1.08998 * 111.00511 * 277.42784 * 14 4 2 44 44 H 1.09006 * 111.00657 * 153.57417 * 14 4 2 45 45 H 1.08998 * 110.36726 * 81.82993 * 15 14 4 46 46 H 1.09005 * 110.36534 * 204.15515 * 15 14 4 47 47 H 0.97002 * 119.99560 * 359.97438 * 19 17 16 48 48 H 1.09001 * 109.47156 * 299.99482 * 20 19 17 49 49 H 1.08998 * 109.47226 * 59.99568 * 20 19 17 50 50 H 1.08994 * 109.47435 * 300.00053 * 21 20 19 51 51 H 1.09005 * 109.47249 * 60.00313 * 21 20 19 52 52 H 0.97001 * 120.00315 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7477 1.2437 5 1 2.9637 -0.2805 1.6231 6 7 1.0281 -0.8027 2.2872 7 6 1.3798 -1.0366 3.5671 8 8 2.5485 -1.2023 3.8554 9 8 0.4362 -1.0865 4.5261 10 6 0.8874 -1.3431 5.8822 11 6 1.8553 -0.2400 6.3148 12 6 -0.3170 -1.3628 6.8254 13 6 1.5996 -2.6961 5.9352 14 6 2.3558 -2.1673 0.6944 15 6 2.8619 -1.8471 -0.7343 16 7 2.0331 -0.7134 -1.1830 17 6 1.7794 -0.3850 -2.4652 18 8 1.0790 0.5758 -2.7195 19 7 2.3021 -1.1215 -3.4657 20 6 2.0268 -0.7641 -4.8595 21 6 2.7340 -1.7527 -5.7886 22 6 2.4502 -1.3855 -7.2225 23 1 1.8281 -0.5320 -7.4483 24 6 2.9857 -2.1384 -8.2459 25 7 3.7437 -3.1773 -7.9708 26 14 2.6334 -1.6836 -10.0231 27 1 3.1304 -0.3099 -10.2903 28 1 3.3199 -2.6430 -10.9250 29 1 1.1695 -1.7364 -10.2667 30 1 -0.3633 0.4980 0.8990 31 1 -0.3633 0.5296 -0.8807 32 1 -0.3633 -1.0275 -0.0183 33 1 0.0951 -0.6706 2.0569 34 1 1.3480 0.7240 6.2770 35 1 2.1945 -0.4328 7.3326 36 1 2.7136 -0.2255 5.6429 37 1 -1.0070 -2.1484 6.5172 38 1 0.0218 -1.5549 7.8434 39 1 -0.8240 -0.3986 6.7874 40 1 2.4578 -2.6817 5.2633 41 1 1.9388 -2.8885 6.9531 42 1 0.9100 -3.4821 5.6270 43 1 1.4505 -2.7735 0.6615 44 1 3.1313 -2.6577 1.2829 45 1 3.9135 -1.5617 -0.7091 46 1 2.7165 -2.7060 -1.3896 47 1 2.8612 -1.8877 -3.2628 48 1 0.9523 -0.8015 -5.0387 49 1 2.3929 0.2437 -5.0553 50 1 3.8084 -1.7150 -5.6093 51 1 2.3681 -2.7607 -5.5929 52 1 4.1202 -3.7073 -8.6908 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496352900.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:19:22 Heat of formation + Delta-G solvation = -133.192533 kcal Electronic energy + Delta-G solvation = -30341.920091 eV Core-core repulsion = 26147.756260 eV Total energy + Delta-G solvation = -4194.163831 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.04201 -41.36273 -39.52874 -37.88611 -36.55624 -35.68886 -34.92481 -34.62342 -32.30790 -32.04639 -30.56030 -28.31313 -28.25765 -27.00281 -26.72762 -24.30466 -23.80788 -22.86881 -21.54471 -21.11631 -20.61394 -19.43665 -19.07139 -18.44481 -17.72917 -17.13193 -17.11435 -16.97636 -16.52369 -16.35288 -15.94488 -15.61508 -15.40642 -15.25060 -14.98786 -14.58132 -14.43756 -14.29454 -14.15433 -13.81444 -13.40896 -13.32192 -13.27132 -13.18862 -13.04036 -12.90551 -12.85825 -12.82399 -12.80425 -12.52515 -12.44714 -12.26746 -12.21833 -12.06359 -11.86229 -11.64386 -11.48071 -11.34874 -11.14608 -11.07273 -10.58732 -10.26013 -10.16404 -9.54111 -8.22658 -6.32973 1.03747 1.42888 1.45265 1.52859 1.63626 1.76071 2.13133 2.41764 3.00444 3.12124 3.13741 3.31885 3.50520 3.79058 3.84377 3.90564 3.99068 4.05800 4.21226 4.26106 4.45811 4.46880 4.52628 4.53678 4.62650 4.65299 4.66308 4.78691 4.81462 4.87174 4.88276 4.90822 4.92352 4.94210 5.01061 5.14754 5.18919 5.27799 5.28844 5.32928 5.39685 5.41061 5.52683 5.59163 5.60133 5.80289 6.00947 6.18192 6.36119 6.79763 6.98029 7.32934 7.36183 7.55859 8.88910 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.034805 B = 0.001712 C = 0.001671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.284737 B =16352.299224 C =16751.189771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.149 3.851 3 H 0.078 0.922 4 C 0.167 3.833 5 H 0.109 0.891 6 N -0.694 5.694 7 C 0.650 3.350 8 O -0.586 6.586 9 O -0.369 6.369 10 C 0.126 3.874 11 C -0.180 4.180 12 C -0.137 4.137 13 C -0.180 4.180 14 C -0.131 4.131 15 C 0.094 3.906 16 N -0.632 5.632 17 C 0.718 3.282 18 O -0.630 6.630 19 N -0.732 5.732 20 C 0.162 3.838 21 C 0.024 3.976 22 C -0.547 4.547 23 H 0.059 0.941 24 C 0.008 3.992 25 N -0.926 5.926 26 Si 0.965 3.035 27 H -0.269 1.269 28 H -0.281 1.281 29 H -0.269 1.269 30 H 0.091 0.909 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.417 0.583 34 H 0.061 0.939 35 H 0.088 0.912 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.100 0.900 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.088 0.912 42 H 0.061 0.939 43 H 0.085 0.915 44 H 0.102 0.898 45 H 0.086 0.914 46 H 0.085 0.915 47 H 0.404 0.596 48 H 0.044 0.956 49 H 0.044 0.956 50 H 0.008 0.992 51 H 0.008 0.992 52 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.542 1.079 32.720 33.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.044 3.956 3 H 0.096 0.904 4 C 0.063 3.937 5 H 0.127 0.873 6 N -0.357 5.357 7 C 0.403 3.597 8 O -0.477 6.477 9 O -0.284 6.284 10 C 0.090 3.910 11 C -0.237 4.237 12 C -0.194 4.194 13 C -0.237 4.237 14 C -0.170 4.170 15 C -0.029 4.029 16 N -0.370 5.370 17 C 0.420 3.580 18 O -0.511 6.511 19 N -0.387 5.387 20 C 0.037 3.963 21 C -0.013 4.013 22 C -0.586 4.586 23 H 0.077 0.923 24 C -0.191 4.191 25 N -0.565 5.565 26 Si 0.789 3.211 27 H -0.194 1.194 28 H -0.206 1.206 29 H -0.194 1.194 30 H 0.109 0.891 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.257 0.743 34 H 0.080 0.920 35 H 0.107 0.893 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.119 0.881 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.107 0.893 42 H 0.080 0.920 43 H 0.103 0.897 44 H 0.120 0.880 45 H 0.104 0.896 46 H 0.104 0.896 47 H 0.240 0.760 48 H 0.063 0.937 49 H 0.062 0.938 50 H 0.027 0.973 51 H 0.027 0.973 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.424 1.569 32.593 33.079 hybrid contribution -0.022 -0.200 -1.283 1.299 sum -5.446 1.369 31.310 31.810 Atomic orbital electron populations 1.22128 0.94286 1.02952 1.03170 1.21454 0.95416 0.95760 0.82936 0.90430 1.21752 0.90685 0.96639 0.84674 0.87327 1.44866 1.12238 1.75260 1.03363 1.18174 0.83276 0.76071 0.82136 1.90906 1.18782 1.55786 1.82177 1.86318 1.38684 1.84652 1.18718 1.22395 0.96396 0.95893 0.76348 1.22481 0.99952 0.97880 1.03435 1.21893 0.95730 1.03649 0.98164 1.22474 1.01500 0.95359 1.04372 1.23165 1.03292 0.96377 0.94184 1.22516 0.95567 0.88841 0.95944 1.47502 1.54048 1.32783 1.02711 1.15564 0.80162 0.82249 0.80047 1.90854 1.45091 1.31784 1.83377 1.45256 1.54843 1.33153 1.05427 1.21081 0.98881 0.98301 0.77989 1.19124 0.95086 0.93886 0.93234 1.21433 1.31546 1.13540 0.92057 0.92256 1.25855 0.94586 0.94734 1.03906 1.70051 1.33931 1.18428 1.34084 0.85503 0.78667 0.78240 0.78659 1.19388 1.20609 1.19369 0.89060 0.92799 0.91490 0.74266 0.92023 0.89289 0.91713 0.91253 0.88108 0.91251 0.91626 0.89327 0.92012 0.89671 0.88002 0.89607 0.89635 0.76007 0.93728 0.93796 0.97345 0.97319 0.92570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.27 7.96 71.98 0.57 -2.69 16 2 C 0.15 3.07 3.47 45.34 0.16 3.22 16 3 H 0.08 1.72 8.14 -2.39 -0.02 1.71 16 4 C 0.17 2.71 3.11 46.18 0.14 2.86 16 5 H 0.11 1.86 7.69 -2.39 -0.02 1.84 16 6 N -0.69 -10.58 4.97 -564.46 -2.81 -13.38 16 7 C 0.65 12.24 8.05 129.79 1.05 13.28 16 8 O -0.59 -13.44 11.61 19.80 0.23 -13.21 16 9 O -0.37 -6.29 9.94 -55.50 -0.55 -6.84 16 10 C 0.13 1.69 1.13 -10.80 -0.01 1.68 16 11 C -0.18 -2.42 8.37 71.98 0.60 -1.82 16 12 C -0.14 -1.10 8.85 71.98 0.64 -0.46 16 13 C -0.18 -2.40 8.37 71.98 0.60 -1.80 16 14 C -0.13 -1.96 6.77 31.99 0.22 -1.74 16 15 C 0.09 1.70 6.57 86.86 0.57 2.27 16 16 N -0.63 -15.93 3.08 -805.87 -2.49 -18.41 16 17 C 0.72 25.18 8.27 179.05 1.48 26.66 16 18 O -0.63 -26.86 15.25 -4.00 -0.06 -26.92 16 19 N -0.73 -26.26 5.52 -478.54 -2.64 -28.90 16 20 C 0.16 7.07 5.61 86.38 0.48 7.56 16 21 C 0.02 1.23 5.09 29.85 0.15 1.38 16 22 C -0.55 -30.63 9.11 25.60 0.23 -30.40 16 23 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 24 C 0.01 0.45 5.46 84.65 0.46 0.91 16 25 N -0.93 -54.12 13.29 21.45 0.28 -53.83 16 26 Si 0.96 43.60 29.54 68.60 2.03 45.63 16 27 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 28 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 29 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 30 H 0.09 1.25 6.67 -2.38 -0.02 1.23 16 31 H 0.05 1.45 6.77 -2.39 -0.02 1.44 16 32 H 0.07 1.22 8.08 -2.39 -0.02 1.20 16 33 H 0.42 5.20 5.84 -92.71 -0.54 4.66 16 34 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.06 1.21 5.88 -2.38 -0.01 1.20 16 37 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 38 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 39 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 40 H 0.06 1.21 5.88 -2.39 -0.01 1.20 16 41 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 42 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 43 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.10 1.40 8.14 -2.38 -0.02 1.38 16 45 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 46 H 0.09 1.50 7.30 -2.38 -0.02 1.48 16 47 H 0.40 12.56 6.95 -92.71 -0.64 11.92 16 48 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 49 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 50 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 51 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 52 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -71.44 409.96 1.08 -70.36 By element: Atomic # 1 Polarization: 24.86 SS G_CDS: -0.26 Total: 24.60 kcal Atomic # 6 Polarization: 13.56 SS G_CDS: 7.35 Total: 20.91 kcal Atomic # 7 Polarization: -106.88 SS G_CDS: -7.65 Total: -114.53 kcal Atomic # 8 Polarization: -46.59 SS G_CDS: -0.38 Total: -46.97 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -71.44 1.08 -70.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496352900.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.829 kcal (2) G-P(sol) polarization free energy of solvation -71.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds