Wall clock time and date at job start Wed Apr 1 2020 01:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.74915 * 2 1 4 4 C 1.52932 * 109.45772 * 120.22660 * 2 1 3 5 5 N 1.46969 * 108.68969 * 70.58765 * 4 2 1 6 6 C 1.34772 * 120.59524 * 235.07422 * 5 4 2 7 7 O 1.21509 * 119.99857 * 0.02851 * 6 5 4 8 8 O 1.34631 * 120.00247 * 180.02562 * 6 5 4 9 9 C 1.45204 * 117.00269 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.47265 * 60.00053 * 9 8 6 11 11 C 1.52997 * 109.47190 * 179.97438 * 9 8 6 12 12 C 1.53002 * 109.46717 * 299.99816 * 9 8 6 13 13 C 1.46970 * 118.81105 * 55.09698 * 5 4 2 14 14 C 1.53369 * 108.63350 * 304.77506 * 13 5 4 15 15 N 1.46963 * 108.63477 * 49.42662 * 14 13 5 16 16 C 1.34780 * 120.59436 * 124.75489 * 15 14 13 17 17 O 1.21582 * 119.99985 * 185.21377 * 16 15 14 18 18 N 1.34775 * 119.99859 * 5.20616 * 16 15 14 19 19 C 1.46501 * 119.99835 * 175.01197 * 18 16 15 20 20 C 1.53002 * 109.47232 * 180.02562 * 19 18 16 21 21 C 1.50697 * 109.47129 * 180.02562 * 20 19 18 22 22 H 1.08001 * 120.00353 * 359.97438 * 21 20 19 23 23 C 1.37882 * 119.99933 * 179.97438 * 21 20 19 24 24 N 1.31511 * 119.99851 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00071 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46872 * 60.00299 * 25 23 21 27 27 H 1.48499 * 109.47204 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.47314 * 300.00611 * 25 23 21 29 29 H 1.09001 * 109.47161 * 180.42738 * 1 2 3 30 30 H 1.08999 * 109.46681 * 300.43047 * 1 2 3 31 31 H 1.09002 * 109.46966 * 60.42856 * 1 2 3 32 32 H 1.08999 * 109.69171 * 310.76599 * 4 2 1 33 33 H 1.09007 * 109.61811 * 190.36796 * 4 2 1 34 34 H 1.08998 * 109.47342 * 59.99564 * 10 9 8 35 35 H 1.08995 * 109.47328 * 180.02562 * 10 9 8 36 36 H 1.09004 * 109.46770 * 300.00021 * 10 9 8 37 37 H 1.09002 * 109.46949 * 59.99516 * 11 9 8 38 38 H 1.08997 * 109.47247 * 179.97438 * 11 9 8 39 39 H 1.08999 * 109.47432 * 299.99937 * 11 9 8 40 40 H 1.08997 * 109.47093 * 60.00257 * 12 9 8 41 41 H 1.08999 * 109.46434 * 180.02562 * 12 9 8 42 42 H 1.08995 * 109.47266 * 299.99656 * 12 9 8 43 43 H 1.08996 * 109.61023 * 185.02693 * 13 5 4 44 44 H 1.09000 * 109.60977 * 64.51913 * 13 5 4 45 45 H 1.08995 * 109.60942 * 289.67695 * 14 13 5 46 46 H 1.09000 * 109.74578 * 169.25172 * 14 13 5 47 47 H 0.96998 * 120.00062 * 355.01571 * 18 16 15 48 48 H 1.09005 * 109.46996 * 60.00266 * 19 18 16 49 49 H 1.08996 * 109.47268 * 300.00176 * 19 18 16 50 50 H 1.09006 * 109.46884 * 300.00094 * 20 19 18 51 51 H 1.08992 * 109.47315 * 59.99776 * 20 19 18 52 52 H 0.96998 * 120.00042 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8983 1.0259 0.0000 4 6 2.0394 -0.7259 1.2459 5 7 1.7600 -2.1616 1.1018 6 6 1.0600 -2.8223 2.0451 7 8 0.6533 -2.2308 3.0255 8 8 0.8114 -4.1376 1.9012 9 6 0.0512 -4.7841 2.9559 10 6 -1.3205 -4.1174 3.0781 11 6 -0.1306 -6.2654 2.6191 12 6 0.8031 -4.6505 4.2817 13 6 2.2581 -2.8640 -0.0893 14 6 1.7438 -2.1368 -1.3379 15 7 2.0233 -0.7012 -1.1937 16 6 2.7240 -0.0407 -2.1366 17 8 3.0307 1.1229 -1.9626 18 7 3.0849 -0.6701 -3.2724 19 6 3.7503 0.0759 -4.3435 20 6 4.0491 -0.8662 -5.5115 21 6 4.7341 -0.0990 -6.6130 22 1 4.9357 0.9551 -6.4923 23 6 5.1034 -0.7429 -7.7750 24 7 4.8583 -2.0266 -7.9218 25 14 5.9518 0.2082 -9.1407 26 1 7.2224 0.7817 -8.6289 27 1 6.2431 -0.7064 -10.2737 28 1 5.0650 1.3053 -9.6047 29 1 -0.3633 -1.0276 0.0077 30 1 -0.3633 0.5205 0.8861 31 1 -0.3633 0.5072 -0.8938 32 1 1.5299 -0.3410 2.1293 33 1 3.1137 -0.5706 1.3464 34 1 -1.8561 -4.2125 2.1336 35 1 -1.8910 -4.6024 3.8701 36 1 -1.1913 -3.0620 3.3179 37 1 0.8465 -6.7407 2.5317 38 1 -0.7008 -6.7508 3.4110 39 1 -0.6664 -6.3602 1.6746 40 1 0.9322 -3.5951 4.5215 41 1 0.2326 -5.1363 5.0734 42 1 1.7802 -5.1255 4.1947 43 1 1.8930 -3.8910 -0.0877 44 1 3.3481 -2.8606 -0.0869 45 1 0.6694 -2.2924 -1.4353 46 1 2.2509 -2.5211 -2.2229 47 1 2.9041 -1.6169 -3.3808 48 1 4.6830 0.4968 -3.9680 49 1 3.0994 0.8811 -4.6841 50 1 4.6999 -1.6717 -5.1712 51 1 3.1163 -1.2868 -5.8869 52 1 5.1178 -2.4795 -8.7393 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496634993.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:34:37 Heat of formation + Delta-G solvation = -104.045390 kcal Electronic energy + Delta-G solvation = -31184.304606 eV Core-core repulsion = 26991.404690 eV Total energy + Delta-G solvation = -4192.899916 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.28419 -40.20761 -38.31513 -36.76368 -35.06837 -34.65225 -33.80624 -33.17753 -32.33964 -29.65879 -28.54977 -27.74610 -27.70477 -26.93966 -24.77149 -23.88695 -22.77193 -21.58276 -20.79260 -20.04236 -18.92022 -18.62552 -17.18732 -16.99085 -16.59283 -16.47435 -16.03159 -15.61304 -15.25639 -15.04174 -14.73420 -14.54263 -14.35779 -14.32242 -13.93332 -13.80473 -13.65915 -13.11300 -12.84979 -12.81870 -12.53919 -12.51064 -12.33692 -12.23448 -12.22284 -12.12430 -11.79054 -11.75265 -11.58752 -11.53843 -11.16867 -11.11850 -11.02835 -10.67661 -10.65667 -10.33949 -10.25121 -9.93537 -9.56809 -9.42720 -9.28969 -8.67390 -8.45322 -8.20322 -6.10220 -4.12824 1.79309 2.57078 2.77815 3.30921 3.34702 3.38224 3.47834 3.49090 4.12100 4.37055 4.41746 4.42120 4.52622 4.55951 4.60244 4.78002 4.81718 5.02716 5.09138 5.12678 5.19792 5.23803 5.26942 5.32779 5.34945 5.38704 5.43042 5.47471 5.51722 5.56638 5.61479 5.65487 5.76037 5.95109 5.95952 6.01225 6.12619 6.16852 6.25311 6.37845 6.51994 6.75150 6.95335 7.02445 7.13866 7.53427 7.61213 7.88594 8.06100 8.21520 8.32888 8.88521 8.94409 9.51915 11.01390 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.019978 B = 0.002122 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.218292 B =13192.386250 C =14133.019093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.142 3.858 3 H 0.116 0.884 4 C 0.119 3.881 5 N -0.591 5.591 6 C 0.655 3.345 7 O -0.569 6.569 8 O -0.362 6.362 9 C 0.136 3.864 10 C -0.183 4.183 11 C -0.141 4.141 12 C -0.183 4.183 13 C 0.098 3.902 14 C 0.097 3.903 15 N -0.632 5.632 16 C 0.705 3.295 17 O -0.593 6.593 18 N -0.738 5.738 19 C 0.139 3.861 20 C 0.014 3.986 21 C -0.521 4.521 22 H 0.059 0.941 23 C 0.059 3.941 24 N -0.895 5.895 25 Si 0.897 3.103 26 H -0.276 1.276 27 H -0.287 1.287 28 H -0.276 1.276 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.107 0.893 33 H 0.078 0.922 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.087 0.913 41 H 0.069 0.931 42 H 0.059 0.941 43 H 0.103 0.897 44 H 0.078 0.922 45 H 0.074 0.926 46 H 0.095 0.905 47 H 0.392 0.608 48 H 0.055 0.945 49 H 0.053 0.947 50 H 0.022 0.978 51 H 0.021 0.979 52 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.721 -8.526 23.556 27.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.037 3.963 3 H 0.134 0.866 4 C -0.004 4.004 5 N -0.332 5.332 6 C 0.410 3.590 7 O -0.459 6.459 8 O -0.277 6.277 9 C 0.099 3.901 10 C -0.240 4.240 11 C -0.198 4.198 12 C -0.240 4.240 13 C -0.026 4.026 14 C -0.028 4.028 15 N -0.371 5.371 16 C 0.406 3.594 17 O -0.471 6.471 18 N -0.393 5.393 19 C 0.016 3.984 20 C -0.024 4.024 21 C -0.560 4.560 22 H 0.077 0.923 23 C -0.143 4.143 24 N -0.533 5.533 25 Si 0.725 3.275 26 H -0.201 1.201 27 H -0.213 1.213 28 H -0.201 1.201 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.125 0.875 33 H 0.096 0.904 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.106 0.894 37 H 0.086 0.914 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.106 0.894 41 H 0.088 0.912 42 H 0.078 0.922 43 H 0.122 0.878 44 H 0.096 0.904 45 H 0.092 0.908 46 H 0.113 0.887 47 H 0.227 0.773 48 H 0.074 0.926 49 H 0.072 0.928 50 H 0.040 0.960 51 H 0.040 0.960 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.621 -7.684 23.836 27.609 hybrid contribution 0.357 -0.225 -0.921 1.013 sum -11.264 -7.909 22.915 26.731 Atomic orbital electron populations 1.22067 0.94732 1.02159 1.02517 1.21309 0.94288 0.97856 0.82890 0.86617 1.22073 1.01609 0.77391 0.99289 1.46838 1.55569 1.09738 1.21019 1.17929 0.77894 0.80809 0.82319 1.90882 1.55911 1.68572 1.30520 1.86291 1.70065 1.21789 1.49564 1.22076 0.90504 0.92115 0.85382 1.22509 0.95140 1.03868 1.02486 1.21863 1.03085 0.91942 1.02932 1.22510 1.00386 1.05170 0.95944 1.22159 1.00003 0.96738 0.83694 1.21982 1.01601 0.81227 0.97998 1.47294 1.58579 1.08834 1.22355 1.15949 0.78521 0.84756 0.80168 1.90880 1.60839 1.15932 1.79484 1.45717 1.63885 1.13173 1.16545 1.21617 0.95415 0.95340 0.86002 1.19313 0.97280 0.94653 0.91119 1.21007 1.38718 0.95947 1.00313 0.92265 1.24992 0.95845 0.94937 0.98508 1.69940 1.47268 1.08920 1.27216 0.86567 0.80088 0.79661 0.81186 1.20105 1.21269 1.20109 0.92698 0.91365 0.91959 0.87471 0.90418 0.92150 0.91203 0.89392 0.91424 0.90171 0.91374 0.89399 0.91194 0.92195 0.87837 0.90351 0.90814 0.88693 0.77261 0.92649 0.92817 0.96002 0.96026 0.92801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 9.12 37.16 0.34 -1.26 16 2 C 0.14 1.61 3.22 -67.71 -0.22 1.39 16 3 H 0.12 1.48 6.99 -51.93 -0.36 1.12 16 4 C 0.12 1.20 5.94 -3.82 -0.02 1.18 16 5 N -0.59 -5.98 2.59 -178.54 -0.46 -6.44 16 6 C 0.66 7.29 7.74 54.05 0.42 7.71 16 7 O -0.57 -7.26 11.29 -19.28 -0.22 -7.48 16 8 O -0.36 -3.61 8.52 -40.30 -0.34 -3.95 16 9 C 0.14 1.11 1.13 -90.62 -0.10 1.00 16 10 C -0.18 -1.46 8.37 37.16 0.31 -1.15 16 11 C -0.14 -0.82 8.85 37.16 0.33 -0.49 16 12 C -0.18 -1.46 8.37 37.16 0.31 -1.15 16 13 C 0.10 0.86 6.61 -3.59 -0.02 0.84 16 14 C 0.10 0.94 6.14 -3.60 -0.02 0.92 16 15 N -0.63 -8.08 2.67 -170.90 -0.46 -8.53 16 16 C 0.70 12.06 8.29 -86.92 -0.72 11.34 16 17 O -0.59 -12.37 15.76 5.29 0.08 -12.29 16 18 N -0.74 -12.77 5.47 -65.22 -0.36 -13.13 16 19 C 0.14 2.93 5.62 -4.04 -0.02 2.91 16 20 C 0.01 0.34 5.09 -27.88 -0.14 0.20 16 21 C -0.52 -14.31 9.11 -34.44 -0.31 -14.62 16 22 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 23 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 24 N -0.89 -25.82 13.29 55.43 0.74 -25.09 16 25 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 27 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 28 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 29 H 0.05 0.57 7.03 -51.93 -0.36 0.21 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.11 1.07 6.96 -51.93 -0.36 0.71 16 33 H 0.08 0.79 8.14 -51.92 -0.42 0.37 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.09 0.90 5.88 -51.93 -0.31 0.59 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.09 0.90 5.88 -51.93 -0.31 0.60 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.10 0.79 6.91 -51.93 -0.36 0.43 16 44 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.07 0.68 7.41 -51.93 -0.39 0.29 16 46 H 0.10 0.87 5.61 -51.93 -0.29 0.58 16 47 H 0.39 5.82 5.95 -40.82 -0.24 5.58 16 48 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 49 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 50 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 51 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 52 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 406.31 15.07 6.12 6.12 Total: -1.00 -32.83 406.31 -8.75 -41.58 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -8.86 Total: 2.62 kcal Atomic # 6 Polarization: 10.34 SS G_CDS: 0.02 Total: 10.36 kcal Atomic # 7 Polarization: -52.65 SS G_CDS: -0.54 Total: -53.19 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: -0.48 Total: -23.72 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.83 -8.75 -41.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496634993.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.463 kcal (2) G-P(sol) polarization free energy of solvation -32.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds