Wall clock time and date at job start Wed Apr 1 2020 01:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 110.78337 * 2 1 4 4 C 1.54330 * 110.71826 * 236.76421 * 2 1 3 5 5 N 1.47026 * 107.26840 * 219.44364 * 4 2 1 6 6 C 1.34780 * 125.64391 * 178.97562 * 5 4 2 7 7 O 1.21580 * 120.00103 * 359.97438 * 6 5 4 8 8 N 1.34771 * 119.99673 * 180.02562 * 6 5 4 9 9 C 1.46501 * 120.00143 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47363 * 180.02562 * 9 8 6 11 11 C 1.50699 * 109.47189 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99864 * 359.97438 * 11 10 9 13 13 C 1.37880 * 120.00293 * 179.97438 * 11 10 9 14 14 N 1.31511 * 119.99856 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99968 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.47079 * 60.00734 * 15 13 11 17 17 H 1.48503 * 109.46838 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47486 * 300.00311 * 15 13 11 19 19 C 1.47420 * 108.70428 * 358.94103 * 5 4 2 20 20 C 1.54907 * 104.83524 * 24.12518 * 19 5 4 21 21 H 1.09001 * 111.00336 * 81.06484 * 20 19 5 22 22 N 1.46494 * 111.00633 * 204.87752 * 20 19 5 23 23 C 1.34773 * 120.00338 * 273.54793 * 22 20 19 24 24 O 1.21517 * 119.99926 * 359.97438 * 23 22 20 25 25 O 1.34639 * 120.00372 * 180.02562 * 23 22 20 26 26 C 1.45198 * 117.00036 * 180.02562 * 25 23 22 27 27 C 1.52999 * 109.47614 * 59.99527 * 26 25 23 28 28 C 1.53000 * 109.46814 * 179.97438 * 26 25 23 29 29 C 1.53005 * 109.46878 * 299.99220 * 26 25 23 30 30 H 1.08994 * 109.47458 * 181.78342 * 1 2 3 31 31 H 1.09010 * 109.46817 * 301.78723 * 1 2 3 32 32 H 1.09000 * 109.47214 * 61.77702 * 1 2 3 33 33 H 1.08998 * 109.88224 * 100.02684 * 4 2 1 34 34 H 1.08998 * 109.88221 * 338.86076 * 4 2 1 35 35 H 0.97002 * 120.00640 * 0.02562 * 8 6 5 36 36 H 1.09002 * 109.47274 * 300.00670 * 9 8 6 37 37 H 1.09004 * 109.46577 * 60.00190 * 9 8 6 38 38 H 1.09005 * 109.47123 * 299.99729 * 10 9 8 39 39 H 1.08996 * 109.47413 * 60.00147 * 10 9 8 40 40 H 0.96992 * 120.00011 * 179.97438 * 14 13 11 41 41 H 1.08997 * 110.36858 * 142.96748 * 19 5 4 42 42 H 1.08997 * 110.36396 * 265.17736 * 19 5 4 43 43 H 0.97001 * 119.99882 * 93.54554 * 22 20 19 44 44 H 1.09004 * 109.47029 * 59.99889 * 27 26 25 45 45 H 1.09003 * 109.47177 * 179.97438 * 27 26 25 46 46 H 1.08999 * 109.46929 * 300.00450 * 27 26 25 47 47 H 1.08998 * 109.47285 * 59.99720 * 28 26 25 48 48 H 1.09003 * 109.47267 * 179.97438 * 28 26 25 49 49 H 1.09004 * 109.47432 * 299.99434 * 28 26 25 50 50 H 1.09000 * 109.46530 * 60.00644 * 29 26 25 51 51 H 1.08996 * 109.46954 * 180.02562 * 29 26 25 52 52 H 1.08997 * 109.46972 * 300.00477 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0759 -0.7912 -1.2074 5 7 3.2444 -1.5507 -0.7391 6 6 3.9922 -2.3836 -1.4900 7 8 3.7183 -2.5568 -2.6618 8 7 5.0428 -3.0252 -0.9415 9 6 5.8553 -3.9309 -1.7574 10 6 6.9744 -4.5248 -0.8996 11 6 7.8106 -5.4560 -1.7391 12 1 7.5678 -5.6093 -2.7802 13 6 8.8855 -6.1123 -1.1780 14 7 9.1809 -5.9260 0.0899 15 14 9.9214 -7.2671 -2.2185 16 1 10.5135 -6.5142 -3.3534 17 1 11.0077 -7.8434 -1.3859 18 1 9.0666 -8.3621 -2.7432 19 6 3.4632 -1.2499 0.6874 20 6 2.0790 -0.7955 1.2137 21 1 1.4451 -1.6536 1.4374 22 7 2.2215 0.0688 2.3880 23 6 2.3156 -0.4750 3.6175 24 8 2.2818 -1.6822 3.7522 25 8 2.4461 0.3193 4.6968 26 6 2.5424 -0.3353 5.9893 27 6 3.7651 -1.2549 6.0054 28 6 2.6850 0.7212 7.0866 29 6 1.2791 -1.1620 6.2377 30 1 -0.3634 -1.0271 0.0320 31 1 -0.3633 0.5414 0.8736 32 1 -0.3633 0.4860 -0.9055 33 1 2.3740 -0.1023 -1.9978 34 1 1.3128 -1.4758 -1.5777 35 1 5.2607 -2.8879 -0.0063 36 1 5.2278 -4.7346 -2.1426 37 1 6.2899 -3.3783 -2.5904 38 1 7.6021 -3.7212 -0.5142 39 1 6.5396 -5.0774 -0.0668 40 1 9.9368 -6.3880 0.4847 41 1 3.7959 -2.1427 1.2167 42 1 4.1945 -0.4493 0.7983 43 1 2.2481 1.0324 2.2805 44 1 4.6651 -0.6660 5.8284 45 1 3.8377 -1.7460 6.9758 46 1 3.6639 -2.0076 5.2235 47 1 1.8142 1.3767 7.0753 48 1 2.7569 0.2299 8.0570 49 1 3.5852 1.3099 6.9096 50 1 1.1780 -1.9147 5.4558 51 1 1.3513 -1.6531 7.2081 52 1 0.4081 -0.5069 6.2262 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496712120.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:29:26 Heat of formation + Delta-G solvation = -120.477212 kcal Electronic energy + Delta-G solvation = -30572.076826 eV Core-core repulsion = 26378.464372 eV Total energy + Delta-G solvation = -4193.612454 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.14989 -40.16468 -38.44360 -37.06128 -34.88999 -34.68533 -33.95176 -33.03974 -32.45907 -29.55165 -28.83364 -27.72072 -27.63108 -26.61050 -24.60457 -23.83300 -22.06387 -21.18341 -20.92442 -20.16459 -19.69886 -18.38988 -17.92360 -17.07058 -16.54688 -16.32600 -16.26664 -15.59309 -15.18220 -14.86754 -14.67315 -14.50241 -14.25713 -14.04132 -13.88014 -13.73006 -13.61019 -13.39221 -12.88038 -12.80802 -12.59340 -12.49583 -12.34258 -12.22781 -12.20983 -12.17387 -11.90338 -11.65033 -11.53327 -11.44174 -11.16061 -11.04633 -10.98422 -10.64825 -10.62134 -10.30503 -10.27948 -10.00041 -9.59413 -9.48277 -9.24305 -8.74042 -8.42854 -8.17116 -6.05605 -4.08336 1.79023 2.55849 2.84124 3.33938 3.37438 3.41075 3.54998 3.73768 4.01547 4.23586 4.38001 4.41073 4.45268 4.46880 4.53619 4.60414 4.83154 4.99219 4.99787 5.16201 5.23901 5.26985 5.31255 5.34492 5.39283 5.41085 5.47665 5.49524 5.58579 5.60242 5.65866 5.68511 5.70094 5.83267 5.95829 6.02573 6.12448 6.18331 6.25436 6.42335 6.42944 6.80144 7.02288 7.07908 7.25578 7.59313 7.67040 7.93276 8.09918 8.27499 8.38955 8.94616 9.00119 9.56082 11.06082 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.009586 B = 0.002539 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2920.226916 B =11025.616260 C =13607.952552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.109 4.109 3 H 0.093 0.907 4 C 0.135 3.865 5 N -0.641 5.641 6 C 0.719 3.281 7 O -0.593 6.593 8 N -0.735 5.735 9 C 0.140 3.860 10 C 0.013 3.987 11 C -0.521 4.521 12 H 0.059 0.941 13 C 0.059 3.941 14 N -0.895 5.895 15 Si 0.898 3.102 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.276 1.276 19 C 0.088 3.912 20 C 0.157 3.843 21 H 0.110 0.890 22 N -0.700 5.700 23 C 0.651 3.349 24 O -0.559 6.559 25 O -0.365 6.365 26 C 0.137 3.863 27 C -0.186 4.186 28 C -0.141 4.141 29 C -0.184 4.184 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.393 0.607 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.021 0.979 39 H 0.022 0.978 40 H 0.262 0.738 41 H 0.083 0.917 42 H 0.070 0.930 43 H 0.407 0.593 44 H 0.061 0.939 45 H 0.071 0.929 46 H 0.090 0.910 47 H 0.065 0.935 48 H 0.081 0.919 49 H 0.067 0.933 50 H 0.088 0.912 51 H 0.070 0.930 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.940 18.465 13.195 29.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.128 4.128 3 H 0.111 0.889 4 C 0.011 3.989 5 N -0.381 5.381 6 C 0.421 3.579 7 O -0.471 6.471 8 N -0.389 5.389 9 C 0.017 3.983 10 C -0.024 4.024 11 C -0.559 4.559 12 H 0.078 0.922 13 C -0.143 4.143 14 N -0.533 5.533 15 Si 0.725 3.275 16 H -0.201 1.201 17 H -0.213 1.213 18 H -0.201 1.201 19 C -0.037 4.037 20 C 0.052 3.948 21 H 0.128 0.872 22 N -0.360 5.360 23 C 0.404 3.596 24 O -0.447 6.447 25 O -0.280 6.280 26 C 0.100 3.900 27 C -0.243 4.243 28 C -0.198 4.198 29 C -0.241 4.241 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.227 0.773 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.040 0.960 39 H 0.040 0.960 40 H 0.072 0.928 41 H 0.101 0.899 42 H 0.089 0.911 43 H 0.243 0.757 44 H 0.080 0.920 45 H 0.090 0.910 46 H 0.108 0.892 47 H 0.084 0.916 48 H 0.099 0.901 49 H 0.086 0.914 50 H 0.107 0.893 51 H 0.089 0.911 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.937 17.575 12.554 28.724 hybrid contribution 0.873 -0.140 0.093 0.889 sum -18.063 17.435 12.647 28.110 Atomic orbital electron populations 1.21771 0.92901 1.02853 1.02459 1.22536 0.97161 0.99757 0.93373 0.88865 1.21750 0.87424 0.94243 0.95518 1.47419 1.32275 1.48215 1.10213 1.15532 0.79835 0.78388 0.84182 1.90895 1.72873 1.68481 1.14855 1.45577 1.30388 1.48215 1.14686 1.21623 0.92130 0.90513 0.94040 1.19318 0.91770 0.95982 0.95342 1.21011 1.12253 1.25838 0.96844 0.92249 1.24996 0.97406 0.96862 0.95034 1.69948 1.28641 1.43018 1.11722 0.86566 0.79764 0.81042 0.80116 1.20116 1.21275 1.20104 1.22625 0.97189 1.01774 0.82147 1.22133 0.96487 0.93586 0.82567 0.87168 1.44533 1.77815 1.10669 1.02949 1.18092 0.76045 0.84027 0.81451 1.90956 1.54936 1.13277 1.85575 1.86288 1.85905 1.40486 1.15332 1.22101 0.96609 0.92917 0.78340 1.22536 0.96481 1.00797 1.04477 1.21866 1.03215 0.98377 0.96327 1.22521 0.96209 1.01295 1.04053 0.91849 0.91988 0.91623 0.91135 0.91012 0.77336 0.92696 0.92704 0.96019 0.95956 0.92820 0.89872 0.91135 0.75735 0.91993 0.91021 0.89152 0.91571 0.90066 0.91399 0.89281 0.91058 0.92290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 9.13 37.15 0.34 -0.47 16 2 C -0.11 -0.76 3.17 -88.79 -0.28 -1.04 16 3 H 0.09 0.50 8.00 -51.93 -0.42 0.08 16 4 C 0.13 1.43 6.46 -3.06 -0.02 1.41 16 5 N -0.64 -8.90 3.33 -176.24 -0.59 -9.48 16 6 C 0.72 13.45 8.49 -86.92 -0.74 12.71 16 7 O -0.59 -13.24 16.67 5.30 0.09 -13.15 16 8 N -0.74 -14.03 5.52 -65.23 -0.36 -14.39 16 9 C 0.14 3.12 5.61 -4.04 -0.02 3.10 16 10 C 0.01 0.34 5.09 -27.88 -0.14 0.20 16 11 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 16 12 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 13 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 14 N -0.89 -26.58 13.29 55.43 0.74 -25.84 16 15 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 C 0.09 0.99 6.27 -2.53 -0.02 0.98 16 20 C 0.16 1.38 2.76 -65.79 -0.18 1.20 16 21 H 0.11 1.13 7.62 -51.93 -0.40 0.74 16 22 N -0.70 -5.50 5.23 -56.64 -0.30 -5.79 16 23 C 0.65 6.84 8.06 54.05 0.44 7.27 16 24 O -0.56 -7.40 11.63 -19.29 -0.22 -7.62 16 25 O -0.37 -3.52 9.94 -40.32 -0.40 -3.92 16 26 C 0.14 1.17 1.13 -90.62 -0.10 1.06 16 27 C -0.19 -1.73 8.37 37.16 0.31 -1.42 16 28 C -0.14 -0.84 8.85 37.16 0.33 -0.51 16 29 C -0.18 -1.52 8.37 37.16 0.31 -1.21 16 30 H 0.06 0.41 8.13 -51.93 -0.42 -0.02 16 31 H 0.06 0.31 8.14 -51.92 -0.42 -0.11 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.80 7.82 -51.93 -0.41 0.39 16 35 H 0.39 6.78 6.95 -40.82 -0.28 6.50 16 36 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.08 1.06 7.30 -51.93 -0.38 0.68 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.41 2.20 8.63 -40.82 -0.35 1.85 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.09 1.08 5.88 -51.93 -0.31 0.77 16 47 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 49 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.09 0.95 5.88 -51.93 -0.31 0.65 16 51 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 52 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 417.18 15.07 6.29 6.29 Total: -1.00 -34.50 417.18 -9.11 -43.61 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -9.15 Total: 3.78 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: -0.19 Total: 9.82 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: -0.51 Total: -55.50 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -0.54 Total: -24.70 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -34.50 -9.11 -43.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496712120.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.864 kcal (2) G-P(sol) polarization free energy of solvation -34.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds