Wall clock time and date at job start Wed Apr 1 2020 01:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 110.78337 * 2 1 4 4 C 1.54330 * 110.71826 * 236.76421 * 2 1 3 5 5 N 1.47026 * 107.26840 * 219.44364 * 4 2 1 6 6 C 1.34780 * 125.64391 * 178.97562 * 5 4 2 7 7 O 1.21580 * 120.00103 * 359.97438 * 6 5 4 8 8 N 1.34771 * 119.99673 * 180.02562 * 6 5 4 9 9 C 1.46501 * 120.00143 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47363 * 180.02562 * 9 8 6 11 11 C 1.50699 * 109.47189 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99864 * 359.97438 * 11 10 9 13 13 C 1.37880 * 120.00293 * 179.97438 * 11 10 9 14 14 N 1.31511 * 119.99856 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99968 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.47079 * 60.00734 * 15 13 11 17 17 H 1.48503 * 109.46838 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47486 * 300.00311 * 15 13 11 19 19 C 1.47420 * 108.70428 * 358.94103 * 5 4 2 20 20 C 1.54907 * 104.83524 * 24.12518 * 19 5 4 21 21 H 1.09001 * 111.00336 * 81.06484 * 20 19 5 22 22 N 1.46494 * 111.00633 * 204.87752 * 20 19 5 23 23 C 1.34773 * 120.00338 * 273.54793 * 22 20 19 24 24 O 1.21517 * 119.99926 * 359.97438 * 23 22 20 25 25 O 1.34639 * 120.00372 * 180.02562 * 23 22 20 26 26 C 1.45198 * 117.00036 * 180.02562 * 25 23 22 27 27 C 1.52999 * 109.47614 * 59.99527 * 26 25 23 28 28 C 1.53000 * 109.46814 * 179.97438 * 26 25 23 29 29 C 1.53005 * 109.46878 * 299.99220 * 26 25 23 30 30 H 1.08994 * 109.47458 * 181.78342 * 1 2 3 31 31 H 1.09010 * 109.46817 * 301.78723 * 1 2 3 32 32 H 1.09000 * 109.47214 * 61.77702 * 1 2 3 33 33 H 1.08998 * 109.88224 * 100.02684 * 4 2 1 34 34 H 1.08998 * 109.88221 * 338.86076 * 4 2 1 35 35 H 0.97002 * 120.00640 * 0.02562 * 8 6 5 36 36 H 1.09002 * 109.47274 * 300.00670 * 9 8 6 37 37 H 1.09004 * 109.46577 * 60.00190 * 9 8 6 38 38 H 1.09005 * 109.47123 * 299.99729 * 10 9 8 39 39 H 1.08996 * 109.47413 * 60.00147 * 10 9 8 40 40 H 0.96992 * 120.00011 * 179.97438 * 14 13 11 41 41 H 1.08997 * 110.36858 * 142.96748 * 19 5 4 42 42 H 1.08997 * 110.36396 * 265.17736 * 19 5 4 43 43 H 0.97001 * 119.99882 * 93.54554 * 22 20 19 44 44 H 1.09004 * 109.47029 * 59.99889 * 27 26 25 45 45 H 1.09003 * 109.47177 * 179.97438 * 27 26 25 46 46 H 1.08999 * 109.46929 * 300.00450 * 27 26 25 47 47 H 1.08998 * 109.47285 * 59.99720 * 28 26 25 48 48 H 1.09003 * 109.47267 * 179.97438 * 28 26 25 49 49 H 1.09004 * 109.47432 * 299.99434 * 28 26 25 50 50 H 1.09000 * 109.46530 * 60.00644 * 29 26 25 51 51 H 1.08996 * 109.46954 * 180.02562 * 29 26 25 52 52 H 1.08997 * 109.46972 * 300.00477 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0759 -0.7912 -1.2074 5 7 3.2444 -1.5507 -0.7391 6 6 3.9922 -2.3836 -1.4900 7 8 3.7183 -2.5568 -2.6618 8 7 5.0428 -3.0252 -0.9415 9 6 5.8553 -3.9309 -1.7574 10 6 6.9744 -4.5248 -0.8996 11 6 7.8106 -5.4560 -1.7391 12 1 7.5678 -5.6093 -2.7802 13 6 8.8855 -6.1123 -1.1780 14 7 9.1809 -5.9260 0.0899 15 14 9.9214 -7.2671 -2.2185 16 1 10.5135 -6.5142 -3.3534 17 1 11.0077 -7.8434 -1.3859 18 1 9.0666 -8.3621 -2.7432 19 6 3.4632 -1.2499 0.6874 20 6 2.0790 -0.7955 1.2137 21 1 1.4451 -1.6536 1.4374 22 7 2.2215 0.0688 2.3880 23 6 2.3156 -0.4750 3.6175 24 8 2.2818 -1.6822 3.7522 25 8 2.4461 0.3193 4.6968 26 6 2.5424 -0.3353 5.9893 27 6 3.7651 -1.2549 6.0054 28 6 2.6850 0.7212 7.0866 29 6 1.2791 -1.1620 6.2377 30 1 -0.3634 -1.0271 0.0320 31 1 -0.3633 0.5414 0.8736 32 1 -0.3633 0.4860 -0.9055 33 1 2.3740 -0.1023 -1.9978 34 1 1.3128 -1.4758 -1.5777 35 1 5.2607 -2.8879 -0.0063 36 1 5.2278 -4.7346 -2.1426 37 1 6.2899 -3.3783 -2.5904 38 1 7.6021 -3.7212 -0.5142 39 1 6.5396 -5.0774 -0.0668 40 1 9.9368 -6.3880 0.4847 41 1 3.7959 -2.1427 1.2167 42 1 4.1945 -0.4493 0.7983 43 1 2.2481 1.0324 2.2805 44 1 4.6651 -0.6660 5.8284 45 1 3.8377 -1.7460 6.9758 46 1 3.6639 -2.0076 5.2235 47 1 1.8142 1.3767 7.0753 48 1 2.7569 0.2299 8.0570 49 1 3.5852 1.3099 6.9096 50 1 1.1780 -1.9147 5.4558 51 1 1.3513 -1.6531 7.2081 52 1 0.4081 -0.5069 6.2262 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496712120.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:29:25 Heat of formation + Delta-G solvation = -144.617581 kcal Electronic energy + Delta-G solvation = -30573.123631 eV Core-core repulsion = 26378.464372 eV Total energy + Delta-G solvation = -4194.659259 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.97825 -41.32780 -39.55476 -37.94100 -36.61955 -35.63906 -34.93833 -34.68400 -33.52514 -31.40168 -29.77374 -28.33678 -28.26058 -27.72428 -26.27493 -24.88484 -23.06559 -22.76864 -21.85695 -21.21584 -20.76438 -19.21927 -19.16022 -18.49330 -17.94909 -17.38100 -17.14832 -16.93556 -16.53636 -16.41902 -15.65247 -15.53605 -15.37912 -15.16777 -14.95601 -14.76761 -14.56274 -14.38950 -14.28779 -14.09894 -13.44737 -13.30225 -13.26452 -13.17786 -13.08168 -12.92772 -12.88007 -12.83129 -12.59561 -12.54105 -12.35835 -12.26604 -12.23576 -12.08115 -11.74577 -11.71325 -11.55068 -11.36710 -11.28050 -11.11180 -10.61721 -10.37681 -10.21772 -9.55614 -8.24828 -6.35923 1.02992 1.40830 1.44153 1.51447 1.59370 1.74198 2.05692 2.39981 2.88602 3.09678 3.21029 3.28229 3.42527 3.77815 3.81105 3.83173 3.97596 4.05777 4.18532 4.38370 4.40676 4.47670 4.52684 4.54461 4.64176 4.66651 4.69225 4.79924 4.80546 4.82222 4.85087 4.89444 4.91718 4.99023 5.05260 5.12342 5.19064 5.26022 5.30377 5.31366 5.37354 5.42241 5.47835 5.54976 5.59508 5.76502 5.93477 6.14661 6.38370 6.76769 6.88400 7.33346 7.34060 7.47547 8.87181 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.009586 B = 0.002539 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2920.226916 B =11025.616260 C =13607.952552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.087 4.087 3 H 0.122 0.878 4 C 0.126 3.874 5 N -0.634 5.634 6 C 0.715 3.285 7 O -0.632 6.632 8 N -0.734 5.734 9 C 0.160 3.840 10 C 0.025 3.975 11 C -0.547 4.547 12 H 0.061 0.939 13 C 0.006 3.994 14 N -0.928 5.928 15 Si 0.968 3.032 16 H -0.267 1.267 17 H -0.280 1.280 18 H -0.268 1.268 19 C 0.084 3.916 20 C 0.167 3.833 21 H 0.096 0.904 22 N -0.683 5.683 23 C 0.646 3.354 24 O -0.591 6.591 25 O -0.364 6.364 26 C 0.128 3.872 27 C -0.184 4.184 28 C -0.135 4.135 29 C -0.179 4.179 30 H 0.052 0.948 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.401 0.599 36 H 0.045 0.955 37 H 0.048 0.952 38 H 0.007 0.993 39 H 0.004 0.996 40 H 0.266 0.734 41 H 0.064 0.936 42 H 0.085 0.915 43 H 0.423 0.577 44 H 0.060 0.940 45 H 0.086 0.914 46 H 0.059 0.941 47 H 0.074 0.926 48 H 0.098 0.902 49 H 0.068 0.932 50 H 0.061 0.939 51 H 0.086 0.914 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.685 20.234 13.791 31.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.106 4.106 3 H 0.140 0.860 4 C 0.003 3.997 5 N -0.373 5.373 6 C 0.417 3.583 7 O -0.514 6.514 8 N -0.388 5.388 9 C 0.036 3.964 10 C -0.012 4.012 11 C -0.586 4.586 12 H 0.079 0.921 13 C -0.193 4.193 14 N -0.567 5.567 15 Si 0.792 3.208 16 H -0.192 1.192 17 H -0.205 1.205 18 H -0.193 1.193 19 C -0.040 4.040 20 C 0.061 3.939 21 H 0.114 0.886 22 N -0.343 5.343 23 C 0.400 3.600 24 O -0.481 6.481 25 O -0.278 6.278 26 C 0.092 3.908 27 C -0.241 4.241 28 C -0.192 4.192 29 C -0.237 4.237 30 H 0.071 0.929 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.237 0.763 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.025 0.975 39 H 0.023 0.977 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.103 0.897 43 H 0.262 0.738 44 H 0.079 0.921 45 H 0.105 0.895 46 H 0.078 0.922 47 H 0.093 0.907 48 H 0.117 0.883 49 H 0.087 0.913 50 H 0.080 0.920 51 H 0.105 0.895 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -19.719 19.418 13.190 30.657 hybrid contribution 1.070 -0.662 -0.019 1.258 sum -18.649 18.756 13.170 29.547 Atomic orbital electron populations 1.21772 0.91437 1.02678 1.03794 1.22497 0.98074 1.00061 0.90009 0.85970 1.22069 0.86016 0.94186 0.97446 1.47376 1.32062 1.46812 1.11018 1.15620 0.79871 0.78804 0.84001 1.90858 1.73896 1.69948 1.16681 1.45316 1.30622 1.48101 1.14788 1.21124 0.91298 0.90563 0.93414 1.19112 0.92187 0.95059 0.94882 1.21423 1.13113 1.26686 0.97332 0.92065 1.25912 0.98618 0.98443 0.96293 1.70062 1.29283 1.43994 1.13365 0.85457 0.78011 0.78831 0.78504 1.19157 1.20541 1.19309 1.22787 0.99275 1.01532 0.80417 1.21931 0.94584 0.93878 0.83487 0.88638 1.44350 1.76875 1.11320 1.01789 1.18323 0.75790 0.83758 0.82179 1.90958 1.56252 1.14781 1.86083 1.86303 1.85672 1.40316 1.15542 1.22363 0.96118 0.93773 0.78548 1.22507 0.97054 1.00345 1.04238 1.21880 1.03685 0.97793 0.95885 1.22470 0.96537 1.00800 1.03861 0.92878 0.90591 0.90298 0.90716 0.91598 0.76347 0.93699 0.93398 0.97479 0.97747 0.92513 0.91722 0.89691 0.73848 0.92075 0.89481 0.92168 0.90702 0.88337 0.91250 0.92039 0.89524 0.91406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.13 71.98 0.66 -0.55 16 2 C -0.09 -1.00 3.17 -9.61 -0.03 -1.03 16 3 H 0.12 0.79 8.00 -2.39 -0.02 0.77 16 4 C 0.13 2.52 6.46 86.73 0.56 3.09 16 5 N -0.63 -17.49 3.33 -829.77 -2.76 -20.25 16 6 C 0.72 27.25 8.49 179.06 1.52 28.77 16 7 O -0.63 -28.80 16.67 -3.97 -0.07 -28.87 16 8 N -0.73 -28.86 5.52 -478.54 -2.64 -31.49 16 9 C 0.16 7.40 5.61 86.38 0.48 7.89 16 10 C 0.03 1.33 5.09 29.85 0.15 1.49 16 11 C -0.55 -31.51 9.11 25.60 0.23 -31.27 16 12 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 13 C 0.01 0.35 5.46 84.66 0.46 0.81 16 14 N -0.93 -55.78 13.29 21.45 0.28 -55.50 16 15 Si 0.97 44.51 29.54 68.60 2.03 46.54 16 16 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 17 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 18 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 19 C 0.08 1.87 6.27 86.86 0.54 2.41 16 20 C 0.17 2.74 2.76 46.38 0.13 2.86 16 21 H 0.10 1.94 7.62 -2.39 -0.02 1.92 16 22 N -0.68 -9.58 5.23 -563.51 -2.95 -12.53 16 23 C 0.65 13.20 8.06 129.79 1.05 14.25 16 24 O -0.59 -16.05 11.63 19.79 0.23 -15.82 16 25 O -0.36 -6.59 9.94 -55.48 -0.55 -7.14 16 26 C 0.13 2.05 1.13 -10.79 -0.01 2.03 16 27 C -0.18 -3.40 8.37 71.98 0.60 -2.80 16 28 C -0.14 -1.31 8.85 71.98 0.64 -0.67 16 29 C -0.18 -2.83 8.37 71.98 0.60 -2.23 16 30 H 0.05 0.60 8.13 -2.39 -0.02 0.58 16 31 H 0.08 0.50 8.14 -2.38 -0.02 0.48 16 32 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.07 1.42 7.82 -2.39 -0.02 1.40 16 35 H 0.40 14.35 6.95 -92.71 -0.64 13.71 16 36 H 0.04 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.01 0.38 8.14 -2.38 -0.02 0.36 16 39 H 0.00 0.23 8.14 -2.39 -0.02 0.22 16 40 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 41 H 0.06 1.70 7.30 -2.39 -0.02 1.68 16 42 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.42 3.35 8.63 -92.71 -0.80 2.55 16 44 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 45 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.06 1.50 5.88 -2.39 -0.01 1.49 16 47 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 48 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 49 H 0.07 0.66 8.14 -2.39 -0.02 0.65 16 50 H 0.06 1.34 5.88 -2.39 -0.01 1.33 16 51 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 52 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -76.51 417.18 0.63 -75.87 By element: Atomic # 1 Polarization: 24.66 SS G_CDS: -0.53 Total: 24.13 kcal Atomic # 6 Polarization: 17.47 SS G_CDS: 7.59 Total: 25.06 kcal Atomic # 7 Polarization: -111.71 SS G_CDS: -8.06 Total: -119.77 kcal Atomic # 8 Polarization: -51.44 SS G_CDS: -0.39 Total: -51.83 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -76.51 0.63 -75.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496712120.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.744 kcal (2) G-P(sol) polarization free energy of solvation -76.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds