Wall clock time and date at job start Wed Apr 1 2020 00:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47152 * 2 1 4 4 O 1.42900 * 109.46849 * 119.99856 * 2 1 3 5 5 C 1.42899 * 114.00479 * 150.00298 * 4 2 1 6 6 C 1.52997 * 109.47409 * 180.02562 * 5 4 2 7 7 C 1.53003 * 109.46892 * 179.97438 * 6 5 4 8 8 N 1.46498 * 109.47074 * 179.97438 * 7 6 5 9 9 C 1.34779 * 120.00154 * 179.97438 * 8 7 6 10 10 O 1.21348 * 119.99768 * 0.02562 * 9 8 7 11 11 C 1.49450 * 120.00032 * 180.02562 * 9 8 7 12 12 O 1.21356 * 119.99981 * 353.51350 * 11 9 8 13 13 N 1.34774 * 120.00149 * 173.78998 * 11 9 8 14 14 C 1.47074 * 120.88489 * 180.82986 * 13 11 9 15 15 C 1.53700 * 108.27666 * 128.75482 * 14 13 11 16 16 N 1.46902 * 109.25471 * 54.08571 * 15 14 13 17 17 C 1.46896 * 110.99756 * 172.60834 * 16 15 14 18 18 C 1.50697 * 109.47435 * 294.29945 * 17 16 15 19 19 H 1.08007 * 119.99537 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00581 * 180.02562 * 18 17 16 21 21 N 1.31513 * 119.99549 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00075 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47394 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.46973 * 119.99955 * 22 20 18 25 25 H 1.48499 * 109.46712 * 239.99581 * 22 20 18 26 26 C 1.46893 * 111.26804 * 296.75687 * 16 15 14 27 27 C 1.47082 * 120.87694 * 1.11057 * 13 11 9 28 28 H 1.08997 * 109.47661 * 300.00414 * 1 2 3 29 29 H 1.09001 * 109.46509 * 60.00382 * 1 2 3 30 30 H 1.09000 * 109.47042 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47661 * 239.99586 * 2 1 3 32 32 H 1.09001 * 109.46955 * 59.99760 * 3 2 1 33 33 H 1.09002 * 109.46579 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.46581 * 299.99326 * 3 2 1 35 35 H 1.09001 * 109.47304 * 59.99312 * 5 4 2 36 36 H 1.09005 * 109.46784 * 300.00387 * 5 4 2 37 37 H 1.08997 * 109.47635 * 59.99809 * 6 5 4 38 38 H 1.08996 * 109.46854 * 299.99494 * 6 5 4 39 39 H 1.09003 * 109.47166 * 60.00268 * 7 6 5 40 40 H 1.09001 * 109.47490 * 299.99689 * 7 6 5 41 41 H 0.97003 * 119.99969 * 0.02562 * 8 7 6 42 42 H 1.08996 * 109.63545 * 248.52272 * 14 13 11 43 43 H 1.09000 * 109.62802 * 9.11122 * 14 13 11 44 44 H 1.09001 * 109.64614 * 294.08434 * 15 14 13 45 45 H 1.09001 * 109.41940 * 173.95105 * 15 14 13 46 46 H 1.09000 * 109.47800 * 54.30221 * 17 16 15 47 47 H 1.09008 * 109.46958 * 174.30245 * 17 16 15 48 48 H 0.97005 * 119.99532 * 180.02562 * 21 20 18 49 49 H 1.09006 * 109.49533 * 303.14448 * 26 16 15 50 50 H 1.08999 * 109.49656 * 183.06504 * 26 16 15 51 51 H 1.08992 * 109.62979 * 350.89963 * 27 13 11 52 52 H 1.09003 * 109.62769 * 111.48017 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.2659 -1.3245 0.9889 6 6 3.6752 -2.0091 2.2944 7 6 5.0237 -2.7065 2.1036 8 7 5.4159 -3.3615 3.3539 9 6 6.5767 -4.0430 3.4223 10 8 7.2971 -4.1136 2.4483 11 6 6.9766 -4.7117 4.6976 12 8 6.3178 -4.5444 5.7030 13 7 8.0720 -5.4962 4.7325 14 6 8.4730 -6.1780 5.9724 15 6 8.6859 -7.6670 5.6565 16 7 9.6354 -7.7951 4.5429 17 6 10.0019 -9.2004 4.3227 18 6 10.7663 -9.7132 5.5159 19 1 10.9600 -9.0604 6.3543 20 6 11.2183 -11.0156 5.5374 21 7 10.9820 -11.8105 4.5167 22 14 12.1651 -11.6513 7.0169 23 1 12.2963 -10.5676 8.0237 24 1 11.4362 -12.7982 7.6155 25 1 13.5161 -12.0933 6.5872 26 6 9.1009 -7.1917 3.3149 27 6 8.9015 -5.6881 3.5332 28 1 -0.3634 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9562 -0.8901 35 1 4.0199 -0.5874 0.7126 36 1 3.1809 -2.0707 0.1988 37 1 2.9212 -2.7463 2.5702 38 1 3.7602 -1.2632 3.0846 39 1 5.7780 -1.9696 1.8277 40 1 4.9384 -3.4525 1.3134 41 1 4.8399 -3.3053 4.1323 42 1 9.4004 -5.7437 6.3458 43 1 7.6875 -6.0698 6.7203 44 1 7.7353 -8.1221 5.3781 45 1 9.0869 -8.1705 6.5362 46 1 9.0983 -9.7948 4.1872 47 1 10.6248 -9.2780 3.4314 48 1 11.2997 -12.7269 4.5320 49 1 8.1445 -7.6535 3.0691 50 1 9.8028 -7.3504 2.4962 51 1 8.3995 -5.2558 2.6678 52 1 9.8693 -5.2076 3.6766 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602223605.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:43 Heat of formation + Delta-G solvation = -122.901836 kcal Electronic energy + Delta-G solvation = -29422.323813 eV Core-core repulsion = 25228.606219 eV Total energy + Delta-G solvation = -4193.717593 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.07819 -40.09988 -39.40353 -39.01256 -37.05303 -35.90333 -34.42394 -34.09780 -32.19454 -32.17181 -30.23043 -28.16595 -27.86330 -26.91917 -25.28952 -24.27704 -23.52377 -22.79399 -22.12655 -21.93457 -20.65038 -18.82162 -18.41618 -18.24667 -17.82069 -17.44162 -16.97207 -16.83976 -16.59074 -16.08346 -16.00729 -15.86728 -15.72502 -15.53913 -15.35955 -15.05456 -14.86563 -14.38026 -14.14590 -14.08003 -13.70081 -13.68947 -13.42696 -13.15467 -13.05921 -12.83209 -12.75142 -12.74020 -12.59271 -12.54547 -12.35779 -12.28522 -12.23164 -12.05620 -11.95862 -11.75545 -11.56951 -11.33668 -10.63660 -10.49943 -10.40873 -10.21101 -9.92804 -9.08643 -8.20897 -6.31067 0.24604 1.17171 1.42206 1.43041 1.56469 2.03082 2.28871 2.41053 2.73921 3.11565 3.18882 3.25233 3.92444 3.92982 3.94068 3.96878 4.01718 4.13025 4.19422 4.20752 4.29460 4.31786 4.40264 4.47007 4.49210 4.53608 4.61690 4.70844 4.75695 4.81604 4.86878 4.90359 4.92593 4.95631 4.99264 5.06885 5.09864 5.12493 5.19219 5.25711 5.30401 5.33907 5.40205 5.63478 5.90127 6.02282 6.13573 6.27121 6.32660 6.55460 6.60473 6.83721 6.85123 7.38909 8.90554 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.032810 B = 0.001544 C = 0.001520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.183173 B =18132.870493 C =18415.826976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.074 3.926 3 C -0.174 4.174 4 O -0.404 6.404 5 C 0.064 3.936 6 C -0.123 4.123 7 C 0.121 3.879 8 N -0.684 5.684 9 C 0.516 3.484 10 O -0.521 6.521 11 C 0.502 3.498 12 O -0.548 6.548 13 N -0.577 5.577 14 C 0.121 3.879 15 C 0.055 3.945 16 N -0.540 5.540 17 C 0.207 3.793 18 C -0.523 4.523 19 H 0.067 0.933 20 C 0.002 3.998 21 N -0.935 5.935 22 Si 0.970 3.030 23 H -0.261 1.261 24 H -0.280 1.280 25 H -0.279 1.279 26 C 0.041 3.959 27 C 0.073 3.927 28 H 0.057 0.943 29 H 0.085 0.915 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.421 0.579 42 H 0.089 0.911 43 H 0.100 0.900 44 H 0.013 0.987 45 H 0.086 0.914 46 H -0.040 1.040 47 H 0.009 0.991 48 H 0.264 0.736 49 H 0.016 0.984 50 H 0.085 0.915 51 H 0.161 0.839 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.459 26.100 -8.810 33.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.016 3.984 3 C -0.232 4.232 4 O -0.324 6.324 5 C -0.013 4.013 6 C -0.161 4.161 7 C -0.002 4.002 8 N -0.337 5.337 9 C 0.297 3.703 10 O -0.400 6.400 11 C 0.285 3.715 12 O -0.427 6.427 13 N -0.309 5.309 14 C -0.001 4.001 15 C -0.074 4.074 16 N -0.265 5.265 17 C 0.081 3.919 18 C -0.561 4.561 19 H 0.085 0.915 20 C -0.196 4.196 21 N -0.576 5.576 22 Si 0.795 3.205 23 H -0.185 1.185 24 H -0.206 1.206 25 H -0.205 1.205 26 C -0.088 4.088 27 C -0.047 4.047 28 H 0.076 0.924 29 H 0.104 0.896 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.098 0.902 41 H 0.258 0.742 42 H 0.107 0.893 43 H 0.118 0.882 44 H 0.032 0.968 45 H 0.104 0.896 46 H -0.023 1.023 47 H 0.027 0.973 48 H 0.073 0.927 49 H 0.035 0.965 50 H 0.103 0.897 51 H 0.177 0.823 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -17.965 26.243 -8.747 32.983 hybrid contribution -0.168 -1.492 0.464 1.572 sum -18.133 24.751 -8.283 31.781 Atomic orbital electron populations 1.21888 0.93157 1.02649 1.03053 1.22268 0.95479 0.92803 0.87810 1.22297 1.01545 0.96356 1.02964 1.87879 1.37115 1.70437 1.37000 1.22402 0.85728 0.96034 0.97151 1.21574 0.95375 1.00516 0.98595 1.21453 0.96596 0.97130 0.85018 1.45731 1.20399 1.50804 1.16762 1.19915 0.82645 0.79975 0.87746 1.90353 1.51586 1.59895 1.38150 1.20240 0.81289 0.80711 0.89247 1.90727 1.53315 1.62672 1.35948 1.48233 1.24789 1.44507 1.13411 1.21988 1.01655 0.90628 0.85846 1.22378 0.93205 0.95540 0.96235 1.62052 1.40548 1.18681 1.05234 1.19398 0.93103 0.82794 0.96623 1.21494 1.34632 0.96460 1.03495 0.91452 1.25918 0.97255 0.97077 0.99374 1.70099 1.47766 1.07248 1.32443 0.85315 0.77971 0.78246 0.78969 1.18459 1.20620 1.20524 1.22511 0.97753 0.95171 0.93359 1.23324 0.96742 0.95056 0.89625 0.92428 0.89618 0.92389 0.91253 0.92501 0.92487 0.90268 0.92066 0.92095 0.90102 0.89912 0.89936 0.90225 0.74175 0.89283 0.88169 0.96846 0.89572 1.02279 0.97338 0.92721 0.96540 0.89706 0.82341 0.90164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.56 71.98 0.69 -0.60 16 2 C 0.07 0.73 3.34 30.59 0.10 0.83 16 3 C -0.17 -1.45 9.53 71.98 0.69 -0.77 16 4 O -0.40 -5.60 9.99 -148.98 -1.49 -7.08 16 5 C 0.06 0.63 5.75 71.98 0.41 1.05 16 6 C -0.12 -1.19 5.70 30.59 0.17 -1.02 16 7 C 0.12 1.46 5.67 86.38 0.49 1.95 16 8 N -0.68 -11.51 5.55 -464.40 -2.58 -14.09 16 9 C 0.52 12.23 7.81 87.27 0.68 12.91 16 10 O -0.52 -13.68 13.03 -3.24 -0.04 -13.73 16 11 C 0.50 14.27 7.77 87.27 0.68 14.95 16 12 O -0.55 -16.95 15.95 -3.26 -0.05 -17.00 16 13 N -0.58 -17.64 3.00 -818.63 -2.46 -20.10 16 14 C 0.12 3.83 6.62 86.51 0.57 4.40 16 15 C 0.06 2.16 5.47 86.54 0.47 2.64 16 16 N -0.54 -23.40 4.62 -898.88 -4.15 -27.55 16 17 C 0.21 11.07 4.72 85.56 0.40 11.47 16 18 C -0.52 -29.33 8.41 25.60 0.22 -29.11 16 19 H 0.07 3.67 7.13 -2.91 -0.02 3.65 16 20 C 0.00 0.10 5.46 84.65 0.46 0.56 16 21 N -0.94 -56.26 13.29 21.45 0.28 -55.98 16 22 Si 0.97 44.01 29.54 68.60 2.03 46.04 16 23 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 24 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 25 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 26 C 0.04 1.50 5.62 86.38 0.49 1.98 16 27 C 0.07 2.21 6.35 86.35 0.55 2.76 16 28 H 0.06 0.56 8.14 -2.39 -0.02 0.55 16 29 H 0.09 0.43 8.14 -2.39 -0.02 0.42 16 30 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.07 0.55 7.79 -2.39 -0.02 0.53 16 32 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.06 0.47 7.87 -2.39 -0.02 0.45 16 34 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.06 0.50 7.87 -2.39 -0.02 0.48 16 36 H 0.06 0.51 8.09 -2.38 -0.02 0.49 16 37 H 0.08 0.82 8.14 -2.39 -0.02 0.81 16 38 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.42 6.24 7.96 -92.71 -0.74 5.50 16 42 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 43 H 0.10 3.00 7.07 -2.39 -0.02 2.98 16 44 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 45 H 0.09 3.56 6.67 -2.39 -0.02 3.54 16 46 H -0.04 -2.38 8.12 -2.39 -0.02 -2.39 16 47 H 0.01 0.49 7.97 -2.38 -0.02 0.47 16 48 H 0.26 14.91 8.31 -92.70 -0.77 14.14 16 49 H 0.02 0.63 8.14 -2.38 -0.02 0.61 16 50 H 0.08 3.03 7.99 -2.39 -0.02 3.01 16 51 H 0.16 4.54 3.93 -74.93 -0.29 4.25 16 52 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -68.84 416.67 -1.50 -70.34 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -0.12 Total: 15.15 kcal Atomic # 6 Polarization: 16.93 SS G_CDS: 7.08 Total: 24.00 kcal Atomic # 7 Polarization: -108.82 SS G_CDS: -8.90 Total: -117.72 kcal Atomic # 8 Polarization: -36.23 SS G_CDS: -1.58 Total: -37.81 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -68.84 -1.50 -70.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602223605.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.563 kcal (2) G-P(sol) polarization free energy of solvation -68.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds