Wall clock time and date at job start Wed Apr 1 2020 00:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47257 * 2 1 4 4 O 1.45197 * 109.47120 * 120.00009 * 2 1 3 5 5 C 1.34233 * 117.00401 * 150.00312 * 4 2 1 6 6 O 1.20826 * 119.99263 * 359.97438 * 5 4 2 7 7 C 1.50695 * 120.00143 * 179.97438 * 5 4 2 8 8 C 1.53004 * 109.46889 * 179.97438 * 7 5 4 9 9 C 1.53003 * 109.47165 * 180.02562 * 8 7 5 10 10 N 1.46502 * 109.47143 * 180.02562 * 9 8 7 11 11 C 1.34774 * 119.99800 * 179.97438 * 10 9 8 12 12 O 1.21585 * 119.99945 * 354.92544 * 11 10 9 13 13 N 1.34774 * 119.99512 * 174.91709 * 11 10 9 14 14 C 1.47089 * 120.87764 * 184.71885 * 13 11 10 15 15 C 1.53697 * 108.27240 * 128.75787 * 14 13 11 16 16 N 1.46892 * 109.25956 * 54.08284 * 15 14 13 17 17 C 1.46904 * 111.00471 * 172.60343 * 16 15 14 18 18 C 1.50697 * 109.47052 * 294.30748 * 17 16 15 19 19 H 1.08003 * 120.00232 * 359.97438 * 18 17 16 20 20 C 1.37878 * 119.99923 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00213 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00042 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.47283 * 89.99637 * 22 20 18 24 24 H 1.48502 * 109.47258 * 209.99643 * 22 20 18 25 25 H 1.48498 * 109.46901 * 329.99821 * 22 20 18 26 26 C 1.46894 * 111.27143 * 296.75638 * 16 15 14 27 27 C 1.47077 * 120.88564 * 5.00095 * 13 11 10 28 28 H 1.09001 * 109.47163 * 300.00319 * 1 2 3 29 29 H 1.09003 * 109.47260 * 60.00323 * 1 2 3 30 30 H 1.08999 * 109.46749 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47163 * 239.99680 * 2 1 3 32 32 H 1.09001 * 109.47294 * 59.99761 * 3 2 1 33 33 H 1.09000 * 109.47385 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.46721 * 300.00006 * 3 2 1 35 35 H 1.08998 * 109.47226 * 60.00246 * 7 5 4 36 36 H 1.08988 * 109.47089 * 299.99521 * 7 5 4 37 37 H 1.09005 * 109.47199 * 60.00039 * 8 7 5 38 38 H 1.09002 * 109.47170 * 300.00066 * 8 7 5 39 39 H 1.09002 * 109.47038 * 300.00033 * 9 8 7 40 40 H 1.08991 * 109.46955 * 59.99910 * 9 8 7 41 41 H 0.97000 * 119.99542 * 359.97438 * 10 9 8 42 42 H 1.08998 * 109.62971 * 248.52601 * 14 13 11 43 43 H 1.08999 * 109.62599 * 9.10699 * 14 13 11 44 44 H 1.09003 * 109.65098 * 294.07535 * 15 14 13 45 45 H 1.09003 * 109.41717 * 173.95198 * 15 14 13 46 46 H 1.09006 * 109.46642 * 54.30014 * 17 16 15 47 47 H 1.08994 * 109.47588 * 174.29884 * 17 16 15 48 48 H 0.96993 * 119.99943 * 180.02562 * 21 20 18 49 49 H 1.09004 * 109.49237 * 303.13907 * 26 16 15 50 50 H 1.09000 * 109.49692 * 183.06355 * 26 16 15 51 51 H 1.08995 * 109.62941 * 350.89475 * 27 13 11 52 52 H 1.09002 * 109.63207 * 111.47414 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 3.1937 -1.3170 1.0852 6 8 3.8015 -1.2996 0.0411 7 6 3.7599 -2.0487 2.2747 8 6 5.1022 -2.6773 1.8951 9 6 5.6769 -3.4207 3.1026 10 7 6.9624 -4.0221 2.7393 11 6 7.6568 -4.7304 3.6517 12 8 7.2632 -4.7934 4.8004 13 7 8.7874 -5.3691 3.2907 14 6 9.5046 -6.2308 4.2429 15 6 9.7513 -7.5908 3.5708 16 7 10.4350 -7.3802 2.2879 17 6 10.8465 -8.6595 1.6943 18 6 11.8937 -9.3038 2.5656 19 1 12.2212 -8.8120 3.4697 20 6 12.4337 -10.5211 2.2087 21 7 12.0346 -11.1203 1.1080 22 14 13.7323 -11.3195 3.2884 23 1 13.0725 -12.1880 4.2963 24 1 14.6401 -12.1397 2.4466 25 1 14.5166 -10.2656 3.9806 26 6 9.5967 -6.6133 1.3568 27 6 9.3402 -5.2181 1.9362 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9562 -0.8900 35 1 3.0670 -2.8313 2.5835 36 1 3.9061 -1.3478 3.0965 37 1 5.7954 -1.8949 1.5860 38 1 4.9557 -3.3783 1.0733 39 1 5.8234 -2.7201 3.9247 40 1 4.9836 -4.2031 3.4112 41 1 7.3137 -3.9105 1.8421 42 1 10.4570 -5.7713 4.5071 43 1 8.9000 -6.3682 5.1394 44 1 8.7991 -8.0922 3.3975 45 1 10.3748 -8.2073 4.2184 46 1 9.9820 -9.3190 1.6173 47 1 11.2586 -8.4832 0.7008 48 1 12.4142 -11.9769 0.8572 49 1 8.6466 -7.1283 1.2142 50 1 10.1080 -6.5209 0.3986 51 1 8.6271 -4.6857 1.3069 52 1 10.2772 -4.6631 1.9828 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602295777.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:40 Heat of formation + Delta-G solvation = -137.781083 kcal Electronic energy + Delta-G solvation = -29326.620781 eV Core-core repulsion = 25132.257975 eV Total energy + Delta-G solvation = -4194.362806 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.64497 -41.40585 -39.17388 -38.12214 -36.70156 -35.97649 -34.48819 -34.23665 -33.56315 -31.98293 -30.08792 -28.34220 -28.20721 -27.03137 -24.76815 -24.08451 -23.71125 -22.38649 -22.16665 -21.43608 -20.40348 -19.19985 -18.75531 -18.47773 -17.65896 -17.52681 -17.05517 -16.81199 -16.68639 -16.02267 -15.93070 -15.73628 -15.37464 -15.32407 -15.18453 -14.98118 -14.65706 -14.44258 -14.16201 -14.00100 -13.58184 -13.40633 -13.29815 -13.16174 -13.11826 -13.04434 -12.73333 -12.71264 -12.58213 -12.55078 -12.35167 -12.28274 -12.15045 -11.94950 -11.90875 -11.74054 -11.63244 -11.43272 -11.37043 -11.15774 -10.61424 -10.24515 -9.58602 -9.03497 -8.20171 -6.29935 1.18708 1.43213 1.43770 1.49064 1.55620 1.79314 2.10223 2.41336 2.87867 3.12389 3.23677 3.57306 3.80432 3.90363 3.92884 3.95466 3.98961 4.05558 4.11777 4.14475 4.21582 4.26335 4.44196 4.52613 4.56655 4.59572 4.66264 4.71664 4.73032 4.75477 4.83084 4.85665 4.90216 4.95631 5.02463 5.08166 5.12248 5.15479 5.18685 5.21084 5.23545 5.44582 5.48809 5.55565 5.64573 5.92465 6.04054 6.26609 6.58729 6.73610 6.85688 6.92250 7.39945 7.50683 8.90902 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.027172 B = 0.001541 C = 0.001493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.230927 B =18164.696366 C =18746.468736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.070 3.930 3 C -0.167 4.167 4 O -0.358 6.358 5 C 0.461 3.539 6 O -0.541 6.541 7 C -0.106 4.106 8 C -0.110 4.110 9 C 0.140 3.860 10 N -0.738 5.738 11 C 0.705 3.295 12 O -0.632 6.632 13 N -0.630 5.630 14 C 0.146 3.854 15 C 0.057 3.943 16 N -0.538 5.538 17 C 0.208 3.792 18 C -0.523 4.523 19 H 0.066 0.934 20 C 0.003 3.997 21 N -0.935 5.935 22 Si 0.968 3.032 23 H -0.275 1.275 24 H -0.283 1.283 25 H -0.263 1.263 26 C 0.037 3.963 27 C 0.127 3.873 28 H 0.073 0.927 29 H 0.095 0.905 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.045 0.955 34 H 0.091 0.909 35 H 0.129 0.871 36 H 0.132 0.868 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.407 0.593 42 H 0.079 0.921 43 H 0.086 0.914 44 H 0.009 0.991 45 H 0.080 0.920 46 H -0.042 1.042 47 H 0.011 0.989 48 H 0.264 0.736 49 H 0.018 0.982 50 H 0.088 0.912 51 H 0.108 0.892 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.794 25.341 -1.007 33.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.016 3.984 3 C -0.224 4.224 4 O -0.276 6.276 5 C 0.306 3.694 6 O -0.431 6.431 7 C -0.143 4.143 8 C -0.148 4.148 9 C 0.016 3.984 10 N -0.396 5.396 11 C 0.406 3.594 12 O -0.514 6.514 13 N -0.367 5.367 14 C 0.022 3.978 15 C -0.072 4.072 16 N -0.262 5.262 17 C 0.082 3.918 18 C -0.562 4.562 19 H 0.084 0.916 20 C -0.196 4.196 21 N -0.575 5.575 22 Si 0.793 3.207 23 H -0.201 1.201 24 H -0.209 1.209 25 H -0.187 1.187 26 C -0.092 4.092 27 C 0.004 3.996 28 H 0.092 0.908 29 H 0.114 0.886 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.064 0.936 34 H 0.110 0.890 35 H 0.147 0.853 36 H 0.150 0.850 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.246 0.754 42 H 0.097 0.903 43 H 0.105 0.895 44 H 0.028 0.972 45 H 0.099 0.901 46 H -0.024 1.024 47 H 0.029 0.971 48 H 0.073 0.927 49 H 0.037 0.963 50 H 0.107 0.893 51 H 0.126 0.874 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -21.510 25.459 -0.543 33.334 hybrid contribution 0.243 -1.447 -0.689 1.621 sum -21.266 24.012 -1.232 32.099 Atomic orbital electron populations 1.21908 0.90532 1.03496 1.04354 1.22965 0.96449 0.92953 0.86063 1.22203 1.01068 0.94788 1.04373 1.86572 1.36486 1.62588 1.41907 1.24229 0.78871 0.75859 0.90403 1.90667 1.60160 1.59874 1.32356 1.21328 0.97192 1.01455 0.94358 1.21473 0.95711 1.00334 0.97254 1.21193 0.82894 0.96910 0.97358 1.45166 1.23095 1.56673 1.14702 1.15946 0.80018 0.78903 0.84517 1.90860 1.71698 1.69125 1.19696 1.47429 1.25246 1.49383 1.14610 1.21591 0.96476 0.88360 0.91384 1.22375 0.95770 0.96481 0.92612 1.61992 1.39828 1.20525 1.03889 1.19381 0.93258 0.84622 0.94547 1.21475 1.21859 1.04012 1.08826 0.91585 1.25892 0.99279 0.97751 0.96630 1.70081 1.44883 1.17170 1.25369 0.85396 0.78587 0.78364 0.78353 1.20055 1.20879 1.18726 1.22526 0.95217 0.94631 0.96825 1.21839 1.00218 0.95947 0.81598 0.90772 0.88631 0.91854 0.91131 0.90719 0.93595 0.89019 0.85302 0.85027 0.90257 0.90703 0.91143 0.91745 0.75410 0.90299 0.89517 0.97239 0.90141 1.02422 0.97104 0.92744 0.96341 0.89321 0.87376 0.89470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.57 71.98 0.69 -0.35 16 2 C 0.07 0.85 3.18 30.59 0.10 0.94 16 3 C -0.17 -1.65 9.55 71.98 0.69 -0.96 16 4 O -0.36 -5.17 9.88 -51.44 -0.51 -5.68 16 5 C 0.46 7.08 7.93 71.23 0.56 7.65 16 6 O -0.54 -11.70 15.20 21.96 0.33 -11.37 16 7 C -0.11 -0.95 5.81 29.85 0.17 -0.78 16 8 C -0.11 -1.28 4.62 30.60 0.14 -1.14 16 9 C 0.14 2.22 5.68 86.38 0.49 2.71 16 10 N -0.74 -15.04 5.47 -478.54 -2.62 -17.65 16 11 C 0.70 20.63 8.31 179.06 1.49 22.11 16 12 O -0.63 -23.07 15.83 -3.98 -0.06 -23.14 16 13 N -0.63 -18.40 3.00 -835.04 -2.51 -20.91 16 14 C 0.15 4.75 6.61 86.50 0.57 5.32 16 15 C 0.06 2.22 5.47 86.54 0.47 2.70 16 16 N -0.54 -22.42 4.62 -898.90 -4.15 -26.57 16 17 C 0.21 10.90 4.72 85.56 0.40 11.30 16 18 C -0.52 -29.17 8.41 25.60 0.22 -28.96 16 19 H 0.07 3.58 7.13 -2.91 -0.02 3.56 16 20 C 0.00 0.14 5.46 84.65 0.46 0.61 16 21 N -0.93 -55.85 13.29 21.45 0.28 -55.57 16 22 Si 0.97 43.93 29.54 68.60 2.03 45.95 16 23 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 24 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 25 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 26 C 0.04 1.22 5.62 86.38 0.49 1.70 16 27 C 0.13 3.10 6.59 86.35 0.57 3.67 16 28 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.07 1.05 7.16 -2.39 -0.02 1.04 16 32 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.04 0.60 8.14 -2.39 -0.02 0.59 16 34 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.13 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.13 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.08 0.98 8.10 -2.38 -0.02 0.96 16 38 H 0.07 0.99 8.10 -2.39 -0.02 0.97 16 39 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.41 6.42 5.97 -92.71 -0.55 5.87 16 42 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 43 H 0.09 2.88 7.09 -2.39 -0.02 2.87 16 44 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 45 H 0.08 3.38 6.67 -2.39 -0.02 3.36 16 46 H -0.04 -2.43 8.12 -2.38 -0.02 -2.45 16 47 H 0.01 0.61 7.97 -2.39 -0.02 0.59 16 48 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 49 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 50 H 0.09 2.76 7.99 -2.39 -0.02 2.74 16 51 H 0.11 1.82 5.63 -2.39 -0.01 1.81 16 52 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -75.72 417.91 0.65 -75.07 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: 0.34 Total: 13.33 kcal Atomic # 6 Polarization: 19.02 SS G_CDS: 7.51 Total: 26.53 kcal Atomic # 7 Polarization: -111.70 SS G_CDS: -8.99 Total: -120.69 kcal Atomic # 8 Polarization: -39.95 SS G_CDS: -0.24 Total: -40.18 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Total: -75.72 0.65 -75.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602295777.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.713 kcal (2) G-P(sol) polarization free energy of solvation -75.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds