Wall clock time and date at job start Wed Apr 1 2020 00:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 109.46896 * 2 1 4 4 O 1.21277 * 120.00453 * 0.02562 * 3 2 1 5 5 N 1.34781 * 120.00074 * 179.97438 * 3 2 1 6 6 C 1.46497 * 120.00321 * 179.97438 * 5 3 2 7 7 H 1.09002 * 109.46925 * 35.00428 * 6 5 3 8 8 C 1.53000 * 109.47520 * 275.00808 * 6 5 3 9 9 C 1.50703 * 109.47330 * 154.99989 * 6 5 3 10 10 O 1.21280 * 119.99323 * 28.45125 * 9 6 5 11 11 N 1.34774 * 120.00038 * 208.44948 * 9 6 5 12 12 C 1.46491 * 120.00314 * 354.91730 * 11 9 6 13 13 C 1.50703 * 109.46754 * 272.09632 * 12 11 9 14 14 H 1.07998 * 120.00115 * 0.02562 * 13 12 11 15 15 C 1.37887 * 119.99795 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99620 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 120.00168 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.46700 * 89.99814 * 17 15 13 19 19 H 1.48495 * 109.47083 * 210.00267 * 17 15 13 20 20 H 1.48501 * 109.46746 * 329.99936 * 17 15 13 21 21 C 1.46500 * 119.99405 * 174.90977 * 11 9 6 22 22 C 1.53008 * 109.46962 * 90.00654 * 21 11 9 23 23 N 1.46903 * 109.47047 * 179.97438 * 22 21 11 24 24 C 1.47011 * 110.99771 * 293.62961 * 23 22 21 25 25 C 1.53094 * 109.25625 * 177.60831 * 24 23 22 26 26 O 1.43021 * 109.25992 * 56.85372 * 25 24 23 27 27 C 1.43023 * 113.73031 * 301.32784 * 26 25 24 28 28 C 1.47015 * 110.99834 * 169.99822 * 23 22 21 29 29 H 1.08996 * 109.47137 * 60.00359 * 1 2 3 30 30 H 1.09000 * 109.47067 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47034 * 300.00032 * 1 2 3 32 32 H 1.08994 * 109.47546 * 239.99896 * 2 1 3 33 33 H 1.08996 * 109.47137 * 119.99641 * 2 1 3 34 34 H 0.96999 * 119.99797 * 0.02562 * 5 3 2 35 35 H 1.09001 * 109.46677 * 294.51916 * 8 6 5 36 36 H 1.08994 * 109.47144 * 54.51439 * 8 6 5 37 37 H 1.08995 * 109.47330 * 174.52223 * 8 6 5 38 38 H 1.09002 * 109.47339 * 32.09176 * 12 11 9 39 39 H 1.08997 * 109.47505 * 152.09664 * 12 11 9 40 40 H 0.96997 * 119.99543 * 179.97438 * 16 15 13 41 41 H 1.08995 * 109.48026 * 330.00010 * 21 11 9 42 42 H 1.09003 * 109.47198 * 210.00110 * 21 11 9 43 43 H 1.09002 * 109.47393 * 59.99568 * 22 21 11 44 44 H 1.09003 * 109.46719 * 299.99749 * 22 21 11 45 45 H 1.08993 * 109.51020 * 297.54579 * 24 23 22 46 46 H 1.09006 * 109.50973 * 57.67766 * 24 23 22 47 47 H 1.09002 * 109.50855 * 296.91278 * 25 24 23 48 48 H 1.09004 * 109.54340 * 176.80473 * 25 24 23 49 49 H 1.08998 * 109.50584 * 298.72998 * 27 26 25 50 50 H 1.09006 * 109.53528 * 178.62787 * 27 26 25 51 51 H 1.09006 * 109.50493 * 302.32793 * 28 23 22 52 52 H 1.08994 * 109.50546 * 62.41006 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3574 1.6672 0.0005 6 6 3.8457 3.0484 0.0000 7 1 3.1728 3.6718 0.5888 8 6 3.8977 3.5704 -1.4373 9 6 5.2269 3.0931 0.6011 10 8 5.9550 2.1266 0.5202 11 7 5.6530 4.2072 1.2285 12 6 4.8189 5.4115 1.2300 13 6 5.1230 6.2346 0.0048 14 1 5.8632 5.8944 -0.7043 15 6 4.4561 7.4220 -0.2110 16 7 4.7219 8.1406 -1.2800 17 14 3.1754 8.0102 1.0151 18 1 3.8295 8.8525 2.0484 19 1 2.1422 8.8080 0.3072 20 1 2.5364 6.8373 1.6642 21 6 6.9503 4.2138 1.9091 22 6 8.0381 4.6582 0.9292 23 7 9.3389 4.6653 1.6118 24 6 9.3785 5.6963 2.6591 25 6 10.7259 5.6292 3.3828 26 8 11.7814 5.7844 2.4301 27 6 11.7732 4.7964 1.3961 28 6 10.4364 4.8550 0.6522 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.9877 0.9299 0.0005 35 1 4.6426 3.0088 -2.0010 36 1 2.9204 3.4477 -1.9040 37 1 4.1673 4.6265 -1.4307 38 1 3.7672 5.1251 1.2235 39 1 5.0301 5.9987 2.1237 40 1 4.2525 8.9757 -1.4319 41 1 7.1755 3.2109 2.2717 42 1 6.9154 4.9051 2.7511 43 1 7.8129 5.6612 0.5666 44 1 8.0730 3.9668 0.0872 45 1 9.2572 6.6802 2.2061 46 1 8.5731 5.5216 3.3726 47 1 10.8240 4.6646 3.8809 48 1 10.7828 6.4281 4.1222 49 1 11.9017 3.8076 1.8364 50 1 12.5871 4.9926 0.6980 51 1 10.4031 4.0662 -0.0994 52 1 10.3315 5.8251 0.1666 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000604538439.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:11 Heat of formation + Delta-G solvation = -112.337854 kcal Electronic energy + Delta-G solvation = -31566.274678 eV Core-core repulsion = 27373.015173 eV Total energy + Delta-G solvation = -4193.259505 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.16314 -39.49227 -38.87098 -36.23545 -35.00157 -34.66466 -32.84092 -32.63521 -31.21653 -30.61878 -29.39992 -27.95350 -26.15637 -24.85395 -23.98703 -23.38139 -22.53158 -21.66151 -20.25552 -20.06703 -18.65178 -17.44555 -17.10887 -16.53167 -16.25352 -16.12425 -15.91396 -15.53674 -15.10338 -15.03154 -14.85991 -14.80385 -14.29795 -14.01575 -13.83179 -13.41333 -13.27589 -13.21373 -12.95146 -12.59151 -12.40541 -12.29487 -12.04581 -11.98427 -11.81033 -11.76270 -11.64413 -11.36021 -11.31043 -11.20803 -11.16071 -11.05561 -10.80856 -10.64169 -10.31530 -10.25246 -9.72786 -9.67376 -9.63338 -9.29744 -8.82892 -8.76864 -8.25213 -7.95980 -6.29718 -4.31669 2.79925 3.00103 3.14068 3.17433 3.24528 3.27359 3.70544 3.85460 4.13190 4.21531 4.80220 4.90237 4.95714 5.00895 5.05067 5.05608 5.06248 5.09333 5.18350 5.30769 5.43727 5.49775 5.55831 5.59160 5.61147 5.65257 5.71449 5.75461 5.85697 5.87357 5.88588 5.96257 5.99523 6.15848 6.20165 6.26168 6.28184 6.32591 6.45387 6.59165 6.65643 6.99533 7.04145 7.04939 7.14888 7.22936 7.32865 7.71637 7.91619 8.26434 8.42182 8.63039 8.74198 9.28907 10.81684 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.009721 B = 0.003520 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2879.626582 B = 7951.882300 C = 9987.532879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.143 4.143 3 C 0.509 3.491 4 O -0.541 6.541 5 N -0.717 5.717 6 C 0.130 3.870 7 H 0.110 0.890 8 C -0.162 4.162 9 C 0.521 3.479 10 O -0.564 6.564 11 N -0.584 5.584 12 C 0.201 3.799 13 C -0.541 4.541 14 H 0.082 0.918 15 C 0.081 3.919 16 N -0.885 5.885 17 Si 0.867 3.133 18 H -0.274 1.274 19 H -0.282 1.282 20 H -0.262 1.262 21 C 0.131 3.869 22 C 0.042 3.958 23 N -0.535 5.535 24 C 0.012 3.988 25 C 0.065 3.935 26 O -0.389 6.389 27 C 0.066 3.934 28 C 0.018 3.982 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.405 0.595 35 H 0.050 0.950 36 H 0.060 0.940 37 H 0.112 0.888 38 H 0.039 0.961 39 H 0.032 0.968 40 H 0.268 0.732 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.059 0.941 44 H 0.075 0.925 45 H 0.047 0.953 46 H 0.087 0.913 47 H 0.057 0.943 48 H 0.095 0.905 49 H 0.057 0.943 50 H 0.095 0.905 51 H 0.084 0.916 52 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.928 -11.280 5.904 13.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.183 4.183 3 C 0.295 3.705 4 O -0.417 6.417 5 N -0.370 5.370 6 C 0.022 3.978 7 H 0.128 0.872 8 C -0.220 4.220 9 C 0.308 3.692 10 O -0.444 6.444 11 N -0.314 5.314 12 C 0.080 3.920 13 C -0.579 4.579 14 H 0.100 0.900 15 C -0.124 4.124 16 N -0.522 5.522 17 Si 0.693 3.307 18 H -0.200 1.200 19 H -0.207 1.207 20 H -0.187 1.187 21 C 0.007 3.993 22 C -0.086 4.086 23 N -0.261 5.261 24 C -0.116 4.116 25 C -0.012 4.012 26 O -0.307 6.307 27 C -0.011 4.011 28 C -0.110 4.110 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.241 0.759 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.130 0.870 38 H 0.056 0.944 39 H 0.049 0.951 40 H 0.078 0.922 41 H 0.098 0.902 42 H 0.089 0.911 43 H 0.078 0.922 44 H 0.094 0.906 45 H 0.065 0.935 46 H 0.105 0.895 47 H 0.075 0.925 48 H 0.113 0.887 49 H 0.076 0.924 50 H 0.113 0.887 51 H 0.103 0.897 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.889 -11.212 6.015 13.305 hybrid contribution -0.696 0.877 0.015 1.120 sum 3.194 -10.335 6.030 12.384 Atomic orbital electron populations 1.21519 0.93125 1.01279 1.03441 1.21613 0.98502 0.93907 1.04267 1.20750 0.81970 0.91842 0.75900 1.90717 1.55238 1.46443 1.49351 1.45979 1.07258 1.08627 1.75165 1.20836 0.93622 0.83661 0.99661 0.87206 1.22222 1.01852 1.05285 0.92652 1.20378 0.88631 0.82581 0.77625 1.90604 1.57419 1.36440 1.59957 1.47855 1.18901 1.12811 1.51861 1.20002 0.90703 0.82651 0.98605 1.21267 1.24623 1.05308 1.06743 0.90004 1.24840 0.96313 0.96102 0.95107 1.69872 1.41631 1.14261 1.26413 0.86979 0.82100 0.79787 0.81800 1.19992 1.20725 1.18653 1.21220 0.82058 1.01998 0.94005 1.22534 0.86989 1.02131 0.96986 1.62195 1.03504 1.46981 1.13441 1.22848 0.98651 0.94378 0.95734 1.22663 0.85764 1.01848 0.90904 1.87961 1.50612 1.52968 1.39194 1.22648 0.96518 0.92160 0.89789 1.22740 0.91643 1.01455 0.95165 0.91943 0.92300 0.92004 0.88983 0.89057 0.75909 0.93047 0.92118 0.87003 0.94369 0.95051 0.92227 0.90229 0.91099 0.92232 0.90609 0.93466 0.89473 0.92466 0.88689 0.92436 0.88711 0.89734 0.93724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.20 37.16 0.34 -1.04 16 2 C -0.14 -1.47 6.42 -27.88 -0.18 -1.64 16 3 C 0.51 7.69 7.79 -10.98 -0.09 7.60 16 4 O -0.54 -10.34 15.64 5.56 0.09 -10.25 16 5 N -0.72 -11.03 5.06 -54.93 -0.28 -11.31 16 6 C 0.13 2.37 2.30 -69.08 -0.16 2.21 16 7 H 0.11 2.19 5.47 -51.93 -0.28 1.91 16 8 C -0.16 -3.06 9.46 37.16 0.35 -2.71 16 9 C 0.52 9.97 6.83 -10.99 -0.08 9.90 16 10 O -0.56 -11.31 15.70 5.56 0.09 -11.23 16 11 N -0.58 -11.15 2.46 -175.06 -0.43 -11.58 16 12 C 0.20 4.22 4.12 -5.20 -0.02 4.19 16 13 C -0.54 -13.20 7.31 -34.44 -0.25 -13.45 16 14 H 0.08 2.21 7.79 -52.49 -0.41 1.81 16 15 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 16 N -0.89 -24.67 13.96 55.43 0.77 -23.90 16 17 Si 0.87 19.57 27.47 -169.99 -4.67 14.90 16 18 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.26 -5.71 6.54 56.52 0.37 -5.34 16 21 C 0.13 2.22 5.35 -4.04 -0.02 2.19 16 22 C 0.04 0.72 5.28 -3.82 -0.02 0.70 16 23 N -0.54 -7.87 4.73 -234.31 -1.11 -8.98 16 24 C 0.01 0.16 5.44 -3.71 -0.02 0.14 16 25 C 0.07 0.76 7.01 37.21 0.26 1.02 16 26 O -0.39 -5.20 10.83 -35.23 -0.38 -5.58 16 27 C 0.07 0.77 7.01 37.20 0.26 1.03 16 28 C 0.02 0.25 5.64 -3.71 -0.02 0.23 16 29 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 32 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.41 5.57 7.83 -40.82 -0.32 5.25 16 35 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.11 2.43 5.61 -51.93 -0.29 2.14 16 38 H 0.04 0.82 4.89 -51.93 -0.25 0.57 16 39 H 0.03 0.64 7.29 -51.93 -0.38 0.26 16 40 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 41 H 0.08 1.35 7.50 -51.93 -0.39 0.97 16 42 H 0.07 1.10 6.25 -51.93 -0.32 0.78 16 43 H 0.06 1.18 7.53 -51.93 -0.39 0.79 16 44 H 0.08 1.41 8.04 -51.93 -0.42 0.99 16 45 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.09 1.08 6.38 -51.93 -0.33 0.75 16 47 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 49 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 50 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 51 H 0.08 1.07 8.09 -51.93 -0.42 0.65 16 52 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 407.97 15.07 6.15 6.15 Total: -1.00 -30.15 407.97 -8.38 -38.53 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: -8.87 Total: 10.88 kcal Atomic # 6 Polarization: 12.11 SS G_CDS: 0.26 Total: 12.37 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: -1.04 Total: -55.77 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -0.21 Total: -27.05 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -4.67 Total: 14.90 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -30.15 -8.38 -38.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604538439.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.811 kcal (2) G-P(sol) polarization free energy of solvation -30.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds