Wall clock time and date at job start Wed Apr 1 2020 00:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 109.46896 * 2 1 4 4 O 1.21277 * 120.00453 * 0.02562 * 3 2 1 5 5 N 1.34781 * 120.00074 * 179.97438 * 3 2 1 6 6 C 1.46497 * 120.00321 * 179.97438 * 5 3 2 7 7 H 1.09002 * 109.46925 * 35.00428 * 6 5 3 8 8 C 1.53000 * 109.47520 * 275.00808 * 6 5 3 9 9 C 1.50703 * 109.47330 * 154.99989 * 6 5 3 10 10 O 1.21280 * 119.99323 * 28.45125 * 9 6 5 11 11 N 1.34774 * 120.00038 * 208.44948 * 9 6 5 12 12 C 1.46491 * 120.00314 * 354.91730 * 11 9 6 13 13 C 1.50703 * 109.46754 * 272.09632 * 12 11 9 14 14 H 1.07998 * 120.00115 * 0.02562 * 13 12 11 15 15 C 1.37887 * 119.99795 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99620 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 120.00168 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.46700 * 89.99814 * 17 15 13 19 19 H 1.48495 * 109.47083 * 210.00267 * 17 15 13 20 20 H 1.48501 * 109.46746 * 329.99936 * 17 15 13 21 21 C 1.46500 * 119.99405 * 174.90977 * 11 9 6 22 22 C 1.53008 * 109.46962 * 90.00654 * 21 11 9 23 23 N 1.46903 * 109.47047 * 179.97438 * 22 21 11 24 24 C 1.47011 * 110.99771 * 293.62961 * 23 22 21 25 25 C 1.53094 * 109.25625 * 177.60831 * 24 23 22 26 26 O 1.43021 * 109.25992 * 56.85372 * 25 24 23 27 27 C 1.43023 * 113.73031 * 301.32784 * 26 25 24 28 28 C 1.47015 * 110.99834 * 169.99822 * 23 22 21 29 29 H 1.08996 * 109.47137 * 60.00359 * 1 2 3 30 30 H 1.09000 * 109.47067 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47034 * 300.00032 * 1 2 3 32 32 H 1.08994 * 109.47546 * 239.99896 * 2 1 3 33 33 H 1.08996 * 109.47137 * 119.99641 * 2 1 3 34 34 H 0.96999 * 119.99797 * 0.02562 * 5 3 2 35 35 H 1.09001 * 109.46677 * 294.51916 * 8 6 5 36 36 H 1.08994 * 109.47144 * 54.51439 * 8 6 5 37 37 H 1.08995 * 109.47330 * 174.52223 * 8 6 5 38 38 H 1.09002 * 109.47339 * 32.09176 * 12 11 9 39 39 H 1.08997 * 109.47505 * 152.09664 * 12 11 9 40 40 H 0.96997 * 119.99543 * 179.97438 * 16 15 13 41 41 H 1.08995 * 109.48026 * 330.00010 * 21 11 9 42 42 H 1.09003 * 109.47198 * 210.00110 * 21 11 9 43 43 H 1.09002 * 109.47393 * 59.99568 * 22 21 11 44 44 H 1.09003 * 109.46719 * 299.99749 * 22 21 11 45 45 H 1.08993 * 109.51020 * 297.54579 * 24 23 22 46 46 H 1.09006 * 109.50973 * 57.67766 * 24 23 22 47 47 H 1.09002 * 109.50855 * 296.91278 * 25 24 23 48 48 H 1.09004 * 109.54340 * 176.80473 * 25 24 23 49 49 H 1.08998 * 109.50584 * 298.72998 * 27 26 25 50 50 H 1.09006 * 109.53528 * 178.62787 * 27 26 25 51 51 H 1.09006 * 109.50493 * 302.32793 * 28 23 22 52 52 H 1.08994 * 109.50546 * 62.41006 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3574 1.6672 0.0005 6 6 3.8457 3.0484 0.0000 7 1 3.1728 3.6718 0.5888 8 6 3.8977 3.5704 -1.4373 9 6 5.2269 3.0931 0.6011 10 8 5.9550 2.1266 0.5202 11 7 5.6530 4.2072 1.2285 12 6 4.8189 5.4115 1.2300 13 6 5.1230 6.2346 0.0048 14 1 5.8632 5.8944 -0.7043 15 6 4.4561 7.4220 -0.2110 16 7 4.7219 8.1406 -1.2800 17 14 3.1754 8.0102 1.0151 18 1 3.8295 8.8525 2.0484 19 1 2.1422 8.8080 0.3072 20 1 2.5364 6.8373 1.6642 21 6 6.9503 4.2138 1.9091 22 6 8.0381 4.6582 0.9292 23 7 9.3389 4.6653 1.6118 24 6 9.3785 5.6963 2.6591 25 6 10.7259 5.6292 3.3828 26 8 11.7814 5.7844 2.4301 27 6 11.7732 4.7964 1.3961 28 6 10.4364 4.8550 0.6522 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.9877 0.9299 0.0005 35 1 4.6426 3.0088 -2.0010 36 1 2.9204 3.4477 -1.9040 37 1 4.1673 4.6265 -1.4307 38 1 3.7672 5.1251 1.2235 39 1 5.0301 5.9987 2.1237 40 1 4.2525 8.9757 -1.4319 41 1 7.1755 3.2109 2.2717 42 1 6.9154 4.9051 2.7511 43 1 7.8129 5.6612 0.5666 44 1 8.0730 3.9668 0.0872 45 1 9.2572 6.6802 2.2061 46 1 8.5731 5.5216 3.3726 47 1 10.8240 4.6646 3.8809 48 1 10.7828 6.4281 4.1222 49 1 11.9017 3.8076 1.8364 50 1 12.5871 4.9926 0.6980 51 1 10.4031 4.0662 -0.0994 52 1 10.3315 5.8251 0.1666 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604538439.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:10 Heat of formation + Delta-G solvation = -134.873691 kcal Electronic energy + Delta-G solvation = -31567.251905 eV Core-core repulsion = 27373.015173 eV Total energy + Delta-G solvation = -4194.236732 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.60804 -40.62055 -40.18818 -37.58159 -36.48510 -36.03961 -34.55666 -33.80738 -32.28712 -31.92283 -30.84066 -29.66754 -27.43194 -26.02368 -25.04005 -24.80529 -24.18782 -22.95710 -21.36822 -21.32381 -20.12686 -19.12002 -18.69083 -17.95607 -17.47022 -17.37706 -17.09185 -16.67539 -16.44337 -16.29560 -16.17852 -15.97221 -15.80127 -15.38819 -15.10230 -14.87953 -14.61415 -14.49205 -14.43902 -14.17859 -13.74179 -13.59826 -13.40498 -13.34449 -13.16516 -13.06366 -12.85759 -12.68432 -12.61421 -12.57493 -12.48823 -12.32758 -12.03697 -12.00164 -11.83751 -11.66944 -11.45945 -10.99497 -10.84945 -10.74177 -10.70049 -10.19880 -9.63665 -9.46136 -8.31093 -6.35297 1.34373 1.40093 1.44067 1.45869 1.63518 1.79875 2.31283 2.40539 2.80700 2.97703 3.02928 3.42096 3.77751 3.82887 3.91362 4.01230 4.02244 4.09911 4.16765 4.19777 4.25621 4.30599 4.32069 4.39763 4.46736 4.54861 4.62119 4.66137 4.69985 4.70880 4.76810 4.78283 4.81196 4.86971 4.91489 4.97576 5.01644 5.04006 5.08813 5.22019 5.34739 5.39747 5.43384 5.53423 5.85706 5.90794 6.13405 6.16634 6.44023 6.52609 6.68351 7.05347 7.23968 7.28522 8.83751 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.009721 B = 0.003520 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2879.626582 B = 7951.882300 C = 9987.532879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.133 4.133 3 C 0.504 3.496 4 O -0.585 6.585 5 N -0.710 5.710 6 C 0.134 3.866 7 H 0.095 0.905 8 C -0.150 4.150 9 C 0.521 3.479 10 O -0.570 6.570 11 N -0.587 5.587 12 C 0.208 3.792 13 C -0.523 4.523 14 H 0.043 0.957 15 C 0.028 3.972 16 N -0.935 5.935 17 Si 0.924 3.076 18 H -0.262 1.262 19 H -0.289 1.289 20 H -0.246 1.246 21 C 0.132 3.868 22 C 0.058 3.942 23 N -0.531 5.531 24 C 0.010 3.990 25 C 0.068 3.932 26 O -0.405 6.405 27 C 0.070 3.930 28 C 0.015 3.985 29 H 0.045 0.955 30 H 0.090 0.910 31 H 0.045 0.955 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.416 0.584 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.079 0.921 38 H 0.042 0.958 39 H 0.049 0.951 40 H 0.267 0.733 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.024 0.976 44 H 0.055 0.945 45 H 0.025 0.975 46 H 0.100 0.900 47 H 0.071 0.929 48 H 0.116 0.884 49 H 0.070 0.930 50 H 0.115 0.885 51 H 0.089 0.911 52 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.059 -13.463 8.135 16.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.173 4.173 3 C 0.293 3.707 4 O -0.465 6.465 5 N -0.364 5.364 6 C 0.026 3.974 7 H 0.112 0.888 8 C -0.208 4.208 9 C 0.308 3.692 10 O -0.451 6.451 11 N -0.317 5.317 12 C 0.087 3.913 13 C -0.562 4.562 14 H 0.062 0.938 15 C -0.172 4.172 16 N -0.574 5.574 17 Si 0.748 3.252 18 H -0.187 1.187 19 H -0.215 1.215 20 H -0.170 1.170 21 C 0.009 3.991 22 C -0.071 4.071 23 N -0.257 5.257 24 C -0.118 4.118 25 C -0.009 4.009 26 O -0.324 6.324 27 C -0.007 4.007 28 C -0.114 4.114 29 H 0.064 0.936 30 H 0.109 0.891 31 H 0.065 0.935 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.254 0.746 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.098 0.902 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.105 0.895 42 H 0.108 0.892 43 H 0.042 0.958 44 H 0.074 0.926 45 H 0.044 0.956 46 H 0.118 0.882 47 H 0.089 0.911 48 H 0.134 0.866 49 H 0.088 0.912 50 H 0.133 0.867 51 H 0.107 0.893 52 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 4.050 -13.442 8.270 16.294 hybrid contribution -0.669 1.490 -0.749 1.797 sum 3.381 -11.952 7.521 14.521 Atomic orbital electron populations 1.21541 0.93130 1.02806 1.01887 1.21702 0.98318 0.90434 1.06833 1.21738 0.81132 0.93577 0.74233 1.90700 1.56154 1.48359 1.51308 1.45927 1.07895 1.07456 1.75097 1.20581 0.92885 0.85443 0.98518 0.88752 1.22032 1.01928 1.03280 0.93601 1.20501 0.88837 0.82471 0.77345 1.90593 1.57728 1.36625 1.60169 1.47861 1.19554 1.12175 1.52081 1.19822 0.91163 0.82990 0.97370 1.21325 1.22681 1.05201 1.06950 0.93837 1.25577 0.98418 0.96462 0.96695 1.70015 1.43565 1.15051 1.28794 0.86061 0.79567 0.79775 0.79815 1.18662 1.21510 1.16964 1.21341 0.80802 1.02833 0.94102 1.22238 0.88774 0.99361 0.96719 1.62262 1.02430 1.47450 1.13558 1.22959 1.00654 0.92757 0.95447 1.22787 0.83981 1.03490 0.90652 1.87946 1.51055 1.53715 1.39711 1.22740 0.95617 0.92541 0.89754 1.22847 0.92520 1.00532 0.95457 0.93619 0.89145 0.93539 0.86287 0.86285 0.74648 0.92446 0.91981 0.90226 0.94070 0.93301 0.92422 0.89542 0.89197 0.95788 0.92599 0.95643 0.88226 0.91087 0.86607 0.91194 0.86665 0.89273 0.95721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.20 71.98 0.66 -1.81 16 2 C -0.13 -2.33 6.42 29.85 0.19 -2.14 16 3 C 0.50 14.53 7.79 87.66 0.68 15.22 16 4 O -0.59 -22.28 15.64 -3.02 -0.05 -22.33 16 5 N -0.71 -20.93 5.06 -446.10 -2.26 -23.19 16 6 C 0.13 4.90 2.30 44.25 0.10 5.01 16 7 H 0.09 3.78 5.47 -2.39 -0.01 3.77 16 8 C -0.15 -5.81 9.46 71.98 0.68 -5.12 16 9 C 0.52 19.76 6.83 87.66 0.60 20.36 16 10 O -0.57 -22.32 15.70 -3.03 -0.05 -22.37 16 11 N -0.59 -22.25 2.46 -826.16 -2.03 -24.28 16 12 C 0.21 8.66 4.12 85.64 0.35 9.02 16 13 C -0.52 -26.33 7.31 25.60 0.19 -26.14 16 14 H 0.04 2.50 7.79 -2.91 -0.02 2.47 16 15 C 0.03 1.49 5.47 84.66 0.46 1.96 16 16 N -0.93 -54.29 13.96 21.45 0.30 -53.99 16 17 Si 0.92 40.38 27.47 68.60 1.88 42.27 16 18 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 19 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 20 H -0.25 -10.04 6.54 99.48 0.65 -9.39 16 21 C 0.13 4.37 5.35 86.38 0.46 4.83 16 22 C 0.06 2.04 5.28 86.31 0.46 2.49 16 23 N -0.53 -15.44 4.73 -895.21 -4.23 -19.67 16 24 C 0.01 0.26 5.44 86.31 0.47 0.73 16 25 C 0.07 1.43 7.01 72.01 0.50 1.93 16 26 O -0.41 -10.13 10.83 -148.98 -1.61 -11.74 16 27 C 0.07 1.52 7.01 72.01 0.50 2.02 16 28 C 0.01 0.40 5.64 86.31 0.49 0.89 16 29 H 0.04 0.97 8.10 -2.39 -0.02 0.95 16 30 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.05 0.98 8.10 -2.39 -0.02 0.96 16 32 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.42 10.57 7.83 -92.71 -0.73 9.84 16 35 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.08 3.63 5.61 -2.39 -0.01 3.61 16 38 H 0.04 1.74 4.89 -2.39 -0.01 1.72 16 39 H 0.05 1.90 7.29 -2.39 -0.02 1.88 16 40 H 0.27 14.70 8.31 -92.71 -0.77 13.92 16 41 H 0.09 2.79 7.50 -2.39 -0.02 2.78 16 42 H 0.09 2.63 6.25 -2.39 -0.01 2.61 16 43 H 0.02 1.00 7.53 -2.39 -0.02 0.98 16 44 H 0.06 2.15 8.04 -2.39 -0.02 2.13 16 45 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.10 2.29 6.38 -2.38 -0.02 2.27 16 47 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 48 H 0.12 1.96 8.14 -2.38 -0.02 1.94 16 49 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 50 H 0.12 2.00 8.14 -2.38 -0.02 1.98 16 51 H 0.09 2.27 8.09 -2.38 -0.02 2.25 16 52 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -68.09 407.97 -1.10 -69.20 By element: Atomic # 1 Polarization: 36.73 SS G_CDS: 0.13 Total: 36.86 kcal Atomic # 6 Polarization: 22.43 SS G_CDS: 6.81 Total: 29.24 kcal Atomic # 7 Polarization: -112.91 SS G_CDS: -8.22 Total: -121.13 kcal Atomic # 8 Polarization: -54.73 SS G_CDS: -1.71 Total: -56.44 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 1.88 Total: 42.27 kcal Total: -68.09 -1.10 -69.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604538439.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.675 kcal (2) G-P(sol) polarization free energy of solvation -68.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds