Wall clock time and date at job start Wed Apr 1 2020 00:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 109.46981 * 2 1 4 4 O 1.21278 * 119.99859 * 359.97438 * 3 2 1 5 5 N 1.34774 * 119.99907 * 180.02562 * 3 2 1 6 6 C 1.46505 * 119.99733 * 179.97438 * 5 3 2 7 7 H 1.08998 * 109.47327 * 324.99906 * 6 5 3 8 8 C 1.53001 * 109.46875 * 85.00316 * 6 5 3 9 9 C 1.50695 * 109.46994 * 205.00082 * 6 5 3 10 10 O 1.21289 * 120.00111 * 331.36875 * 9 6 5 11 11 N 1.34778 * 120.00199 * 151.64512 * 9 6 5 12 12 C 1.46504 * 119.99609 * 4.78808 * 11 9 6 13 13 C 1.50701 * 109.46606 * 88.31917 * 12 11 9 14 14 H 1.07999 * 120.00478 * 359.97438 * 13 12 11 15 15 C 1.37881 * 120.00027 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00397 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 119.99778 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.47185 * 90.00516 * 17 15 13 19 19 H 1.48497 * 109.47381 * 210.00452 * 17 15 13 20 20 H 1.48504 * 109.47468 * 330.00446 * 17 15 13 21 21 C 1.46498 * 120.00194 * 184.79521 * 11 9 6 22 22 C 1.53003 * 109.47074 * 89.99655 * 21 11 9 23 23 N 1.46902 * 109.46902 * 179.97438 * 22 21 11 24 24 C 1.47021 * 110.99819 * 293.63720 * 23 22 21 25 25 C 1.53103 * 109.25378 * 177.61142 * 24 23 22 26 26 O 1.43011 * 109.26152 * 56.84586 * 25 24 23 27 27 C 1.43021 * 113.73961 * 301.33104 * 26 25 24 28 28 C 1.47011 * 111.00181 * 170.00209 * 23 22 21 29 29 H 1.08994 * 109.47276 * 299.99805 * 1 2 3 30 30 H 1.09005 * 109.47362 * 60.00359 * 1 2 3 31 31 H 1.08998 * 109.46901 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46898 * 240.00296 * 2 1 3 33 33 H 1.08997 * 109.47241 * 120.00011 * 2 1 3 34 34 H 0.97001 * 120.00259 * 0.02562 * 5 3 2 35 35 H 1.09003 * 109.46832 * 65.49922 * 8 6 5 36 36 H 1.08999 * 109.47432 * 185.50428 * 8 6 5 37 37 H 1.09001 * 109.46907 * 305.50490 * 8 6 5 38 38 H 1.08999 * 109.47099 * 208.31268 * 12 11 9 39 39 H 1.08997 * 109.47229 * 328.32098 * 12 11 9 40 40 H 0.97001 * 120.00192 * 179.97438 * 16 15 13 41 41 H 1.09000 * 109.47151 * 209.99585 * 21 11 9 42 42 H 1.08993 * 109.47432 * 329.99385 * 21 11 9 43 43 H 1.08993 * 109.47363 * 299.99675 * 22 21 11 44 44 H 1.09002 * 109.47121 * 60.00197 * 22 21 11 45 45 H 1.09000 * 109.50900 * 297.53704 * 24 23 22 46 46 H 1.08990 * 109.50899 * 57.67721 * 24 23 22 47 47 H 1.09010 * 109.50212 * 296.91114 * 25 24 23 48 48 H 1.09002 * 109.54222 * 176.80375 * 25 24 23 49 49 H 1.09003 * 109.50372 * 298.73394 * 27 26 25 50 50 H 1.08996 * 109.53982 * 178.63074 * 27 26 25 51 51 H 1.09000 * 109.50412 * 302.32785 * 28 23 22 52 52 H 1.09004 * 109.50547 * 62.41366 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2441 2.3426 -0.0005 5 7 3.3573 1.6671 -0.0005 6 6 3.8456 3.0484 -0.0011 7 1 3.1729 3.6714 -0.5905 8 6 3.8976 3.5715 1.4358 9 6 5.2268 3.0927 -0.6020 10 8 5.9563 2.1273 -0.5174 11 7 5.6538 4.2069 -1.2287 12 6 4.8174 5.4098 -1.2350 13 6 5.1220 6.2396 -0.0145 14 1 5.8640 5.9044 0.6951 15 6 4.4527 7.4264 0.1969 16 7 4.7181 8.1503 1.2622 17 14 3.1689 8.0059 -1.0301 18 1 1.8379 7.4738 -0.6423 19 1 3.1257 9.4902 -1.0373 20 1 3.5226 7.5144 -2.3860 21 6 6.9539 4.2152 -1.9038 22 6 6.7764 3.7736 -3.3579 23 7 8.0801 3.7825 -4.0349 24 6 8.6030 5.1515 -4.1532 25 6 9.9858 5.1088 -4.8089 26 8 9.8866 4.4556 -6.0773 27 6 9.3813 3.1200 -5.9991 28 6 7.9924 3.1425 -5.3555 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.9877 0.9299 -0.0013 35 1 4.6428 3.0106 1.9999 36 1 4.1667 4.6277 1.4285 37 1 2.9203 3.4487 1.9027 38 1 5.0262 5.9927 -2.1320 39 1 3.7663 5.1215 -1.2254 40 1 4.2475 8.9854 1.4107 41 1 7.3703 5.2222 -1.8781 42 1 7.6314 3.5289 -1.3958 43 1 6.3602 2.7667 -3.3837 44 1 6.0990 4.4600 -3.8659 45 1 7.9275 5.7474 -4.7670 46 1 8.6839 5.5972 -3.1619 47 1 10.6753 4.5582 -4.1689 48 1 10.3537 6.1251 -4.9507 49 1 10.0532 2.5115 -5.3937 50 1 9.3113 2.6974 -7.0013 51 1 7.6275 2.1217 -5.2416 52 1 7.3065 3.7058 -5.9882 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000604538452.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:15 Heat of formation + Delta-G solvation = -112.160762 kcal Electronic energy + Delta-G solvation = -31446.290418 eV Core-core repulsion = 27253.038592 eV Total energy + Delta-G solvation = -4193.251825 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.18030 -39.62423 -38.89028 -36.35065 -35.06389 -34.67820 -32.84996 -32.64918 -31.35008 -30.68558 -29.47587 -27.92719 -26.24141 -24.87430 -24.12922 -23.41266 -22.68950 -21.64089 -20.41667 -20.06248 -18.66354 -17.36976 -17.15843 -16.70395 -16.32754 -16.22476 -15.94410 -15.54928 -15.25697 -15.14375 -14.92524 -14.83189 -14.36888 -14.16223 -13.85145 -13.49825 -13.32932 -13.26673 -13.00189 -12.57727 -12.45899 -12.39357 -12.18572 -12.02891 -11.81224 -11.76568 -11.62290 -11.52395 -11.46296 -11.21328 -11.07588 -10.97957 -10.82861 -10.74506 -10.50368 -10.30609 -9.82090 -9.69717 -9.66503 -9.30198 -8.83256 -8.76470 -8.47761 -7.95370 -6.28757 -4.30892 2.78726 2.96684 3.16143 3.19722 3.23169 3.27462 3.54606 3.74683 4.05493 4.21970 4.75051 4.79423 4.87504 4.90674 4.99747 5.01170 5.03080 5.04681 5.07018 5.15712 5.32410 5.42294 5.44034 5.48556 5.51703 5.59052 5.65809 5.69566 5.70717 5.74558 5.80851 5.85496 5.87863 6.06990 6.15491 6.25151 6.27261 6.29882 6.35212 6.57670 6.65394 6.87358 6.87732 7.01196 7.01587 7.16129 7.33621 7.70814 7.91724 8.27647 8.41391 8.62749 8.76437 9.29735 10.82894 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.007944 B = 0.003806 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3523.741138 B = 7355.509848 C = 9847.207784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.143 4.143 3 C 0.509 3.491 4 O -0.540 6.540 5 N -0.717 5.717 6 C 0.129 3.871 7 H 0.110 0.890 8 C -0.162 4.162 9 C 0.520 3.480 10 O -0.564 6.564 11 N -0.583 5.583 12 C 0.203 3.797 13 C -0.543 4.543 14 H 0.082 0.918 15 C 0.082 3.918 16 N -0.885 5.885 17 Si 0.866 3.134 18 H -0.269 1.269 19 H -0.282 1.282 20 H -0.266 1.266 21 C 0.124 3.876 22 C 0.044 3.956 23 N -0.532 5.532 24 C 0.011 3.989 25 C 0.064 3.936 26 O -0.389 6.389 27 C 0.065 3.935 28 C 0.018 3.982 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.405 0.595 35 H 0.051 0.949 36 H 0.112 0.888 37 H 0.060 0.940 38 H 0.035 0.965 39 H 0.033 0.967 40 H 0.268 0.732 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.075 0.925 44 H 0.037 0.963 45 H 0.044 0.956 46 H 0.095 0.905 47 H 0.060 0.940 48 H 0.098 0.902 49 H 0.059 0.941 50 H 0.095 0.905 51 H 0.085 0.915 52 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.315 -12.618 -9.438 15.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.183 4.183 3 C 0.295 3.705 4 O -0.417 6.417 5 N -0.370 5.370 6 C 0.022 3.978 7 H 0.127 0.873 8 C -0.220 4.220 9 C 0.308 3.692 10 O -0.445 6.445 11 N -0.313 5.313 12 C 0.082 3.918 13 C -0.581 4.581 14 H 0.100 0.900 15 C -0.123 4.123 16 N -0.522 5.522 17 Si 0.692 3.308 18 H -0.194 1.194 19 H -0.208 1.208 20 H -0.191 1.191 21 C 0.000 4.000 22 C -0.085 4.085 23 N -0.258 5.258 24 C -0.117 4.117 25 C -0.012 4.012 26 O -0.307 6.307 27 C -0.012 4.012 28 C -0.110 4.110 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.241 0.759 35 H 0.071 0.929 36 H 0.130 0.870 37 H 0.079 0.921 38 H 0.053 0.947 39 H 0.051 0.949 40 H 0.078 0.922 41 H 0.100 0.900 42 H 0.105 0.895 43 H 0.094 0.906 44 H 0.055 0.945 45 H 0.062 0.938 46 H 0.113 0.887 47 H 0.079 0.921 48 H 0.116 0.884 49 H 0.078 0.922 50 H 0.113 0.887 51 H 0.103 0.897 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 2.465 -12.416 -9.190 15.643 hybrid contribution -1.107 0.589 -0.743 1.458 sum 1.358 -11.827 -9.934 15.505 Atomic orbital electron populations 1.21520 0.93121 1.01283 1.03445 1.21615 0.98506 0.93904 1.04264 1.20752 0.81971 0.91846 0.75910 1.90719 1.55227 1.46448 1.49343 1.45982 1.07255 1.08618 1.75167 1.20837 0.93595 0.83643 0.99732 0.87270 1.22223 1.01880 1.05302 0.92629 1.20400 0.88665 0.82628 0.77552 1.90603 1.57046 1.36309 1.60493 1.47811 1.19392 1.12795 1.51306 1.19966 0.90326 0.82659 0.98842 1.21267 1.24597 1.05252 1.06940 0.89952 1.24826 0.96350 0.96057 0.95047 1.69871 1.41585 1.14166 1.26528 0.87007 0.82935 0.78667 0.82195 1.19431 1.20783 1.19057 1.21238 0.85574 1.02686 0.90467 1.22507 0.88939 1.01589 0.95462 1.62125 1.26588 1.18062 1.19029 1.22903 0.96774 0.89830 1.02194 1.22687 0.95731 0.98071 0.84757 1.87963 1.85406 1.27614 1.29755 1.22639 0.93387 0.84225 1.00940 1.22765 0.97953 1.00413 0.89862 0.91920 0.92025 0.92296 0.89084 0.88960 0.75907 0.92949 0.87006 0.92111 0.94743 0.94934 0.92200 0.90045 0.89523 0.90621 0.94490 0.93789 0.88726 0.92147 0.88405 0.92223 0.88671 0.89704 0.94074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.20 37.16 0.34 -1.04 16 2 C -0.14 -1.46 6.42 -27.88 -0.18 -1.64 16 3 C 0.51 7.68 7.79 -10.98 -0.09 7.59 16 4 O -0.54 -10.33 15.64 5.56 0.09 -10.25 16 5 N -0.72 -11.02 5.06 -54.93 -0.28 -11.30 16 6 C 0.13 2.38 2.30 -69.08 -0.16 2.22 16 7 H 0.11 2.18 5.47 -51.93 -0.28 1.89 16 8 C -0.16 -3.09 9.46 37.16 0.35 -2.74 16 9 C 0.52 10.01 6.84 -10.99 -0.08 9.94 16 10 O -0.56 -11.36 15.63 5.55 0.09 -11.27 16 11 N -0.58 -11.22 2.46 -175.06 -0.43 -11.65 16 12 C 0.20 4.30 4.08 -5.19 -0.02 4.28 16 13 C -0.54 -13.49 7.72 -34.44 -0.27 -13.75 16 14 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 15 C 0.08 2.13 5.47 -17.82 -0.10 2.04 16 16 N -0.88 -24.83 13.96 55.43 0.77 -24.06 16 17 Si 0.87 19.67 27.47 -169.99 -4.67 15.00 16 18 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.27 -5.73 6.54 56.52 0.37 -5.36 16 21 C 0.12 2.11 5.38 -4.04 -0.02 2.09 16 22 C 0.04 0.65 5.28 -3.82 -0.02 0.63 16 23 N -0.53 -7.01 4.73 -234.31 -1.11 -8.12 16 24 C 0.01 0.14 5.44 -3.71 -0.02 0.12 16 25 C 0.06 0.70 7.01 37.21 0.26 0.97 16 26 O -0.39 -4.73 10.83 -35.23 -0.38 -5.11 16 27 C 0.07 0.66 7.01 37.20 0.26 0.92 16 28 C 0.02 0.21 5.64 -3.72 -0.02 0.19 16 29 H 0.06 0.71 8.10 -51.93 -0.42 0.28 16 30 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.41 5.56 7.83 -40.82 -0.32 5.24 16 35 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.11 2.45 5.65 -51.93 -0.29 2.16 16 37 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.03 0.72 7.12 -51.93 -0.37 0.35 16 39 H 0.03 0.70 5.25 -51.93 -0.27 0.43 16 40 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 41 H 0.08 1.39 6.44 -51.93 -0.33 1.05 16 42 H 0.09 1.56 7.36 -51.93 -0.38 1.17 16 43 H 0.08 1.16 8.04 -51.93 -0.42 0.74 16 44 H 0.04 0.56 8.12 -51.93 -0.42 0.14 16 45 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.09 1.18 6.38 -51.93 -0.33 0.84 16 47 H 0.06 0.64 8.14 -51.92 -0.42 0.21 16 48 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 49 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 51 H 0.08 0.87 8.09 -51.93 -0.42 0.45 16 52 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 409.36 15.07 6.17 6.17 Total: -1.00 -30.53 409.36 -8.42 -38.96 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -8.92 Total: 9.83 kcal Atomic # 6 Polarization: 11.55 SS G_CDS: 0.25 Total: 11.80 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: -1.04 Total: -55.13 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -0.21 Total: -26.63 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -4.67 Total: 15.00 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -30.53 -8.42 -38.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604538452.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.201 kcal (2) G-P(sol) polarization free energy of solvation -30.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds