Wall clock time and date at job start Wed Apr 1 2020 00:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50703 * 109.46981 * 2 1 4 4 O 1.21278 * 119.99859 * 359.97438 * 3 2 1 5 5 N 1.34774 * 119.99907 * 180.02562 * 3 2 1 6 6 C 1.46505 * 119.99733 * 179.97438 * 5 3 2 7 7 H 1.08998 * 109.47327 * 324.99906 * 6 5 3 8 8 C 1.53001 * 109.46875 * 85.00316 * 6 5 3 9 9 C 1.50695 * 109.46994 * 205.00082 * 6 5 3 10 10 O 1.21289 * 120.00111 * 331.36875 * 9 6 5 11 11 N 1.34778 * 120.00199 * 151.64512 * 9 6 5 12 12 C 1.46504 * 119.99609 * 4.78808 * 11 9 6 13 13 C 1.50701 * 109.46606 * 88.31917 * 12 11 9 14 14 H 1.07999 * 120.00478 * 359.97438 * 13 12 11 15 15 C 1.37881 * 120.00027 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00397 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 119.99778 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.47185 * 90.00516 * 17 15 13 19 19 H 1.48497 * 109.47381 * 210.00452 * 17 15 13 20 20 H 1.48504 * 109.47468 * 330.00446 * 17 15 13 21 21 C 1.46498 * 120.00194 * 184.79521 * 11 9 6 22 22 C 1.53003 * 109.47074 * 89.99655 * 21 11 9 23 23 N 1.46902 * 109.46902 * 179.97438 * 22 21 11 24 24 C 1.47021 * 110.99819 * 293.63720 * 23 22 21 25 25 C 1.53103 * 109.25378 * 177.61142 * 24 23 22 26 26 O 1.43011 * 109.26152 * 56.84586 * 25 24 23 27 27 C 1.43021 * 113.73961 * 301.33104 * 26 25 24 28 28 C 1.47011 * 111.00181 * 170.00209 * 23 22 21 29 29 H 1.08994 * 109.47276 * 299.99805 * 1 2 3 30 30 H 1.09005 * 109.47362 * 60.00359 * 1 2 3 31 31 H 1.08998 * 109.46901 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46898 * 240.00296 * 2 1 3 33 33 H 1.08997 * 109.47241 * 120.00011 * 2 1 3 34 34 H 0.97001 * 120.00259 * 0.02562 * 5 3 2 35 35 H 1.09003 * 109.46832 * 65.49922 * 8 6 5 36 36 H 1.08999 * 109.47432 * 185.50428 * 8 6 5 37 37 H 1.09001 * 109.46907 * 305.50490 * 8 6 5 38 38 H 1.08999 * 109.47099 * 208.31268 * 12 11 9 39 39 H 1.08997 * 109.47229 * 328.32098 * 12 11 9 40 40 H 0.97001 * 120.00192 * 179.97438 * 16 15 13 41 41 H 1.09000 * 109.47151 * 209.99585 * 21 11 9 42 42 H 1.08993 * 109.47432 * 329.99385 * 21 11 9 43 43 H 1.08993 * 109.47363 * 299.99675 * 22 21 11 44 44 H 1.09002 * 109.47121 * 60.00197 * 22 21 11 45 45 H 1.09000 * 109.50900 * 297.53704 * 24 23 22 46 46 H 1.08990 * 109.50899 * 57.67721 * 24 23 22 47 47 H 1.09010 * 109.50212 * 296.91114 * 25 24 23 48 48 H 1.09002 * 109.54222 * 176.80375 * 25 24 23 49 49 H 1.09003 * 109.50372 * 298.73394 * 27 26 25 50 50 H 1.08996 * 109.53982 * 178.63074 * 27 26 25 51 51 H 1.09000 * 109.50412 * 302.32785 * 28 23 22 52 52 H 1.09004 * 109.50547 * 62.41366 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2441 2.3426 -0.0005 5 7 3.3573 1.6671 -0.0005 6 6 3.8456 3.0484 -0.0011 7 1 3.1729 3.6714 -0.5905 8 6 3.8976 3.5715 1.4358 9 6 5.2268 3.0927 -0.6020 10 8 5.9563 2.1273 -0.5174 11 7 5.6538 4.2069 -1.2287 12 6 4.8174 5.4098 -1.2350 13 6 5.1220 6.2396 -0.0145 14 1 5.8640 5.9044 0.6951 15 6 4.4527 7.4264 0.1969 16 7 4.7181 8.1503 1.2622 17 14 3.1689 8.0059 -1.0301 18 1 1.8379 7.4738 -0.6423 19 1 3.1257 9.4902 -1.0373 20 1 3.5226 7.5144 -2.3860 21 6 6.9539 4.2152 -1.9038 22 6 6.7764 3.7736 -3.3579 23 7 8.0801 3.7825 -4.0349 24 6 8.6030 5.1515 -4.1532 25 6 9.9858 5.1088 -4.8089 26 8 9.8866 4.4556 -6.0773 27 6 9.3813 3.1200 -5.9991 28 6 7.9924 3.1425 -5.3555 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.9877 0.9299 -0.0013 35 1 4.6428 3.0106 1.9999 36 1 4.1667 4.6277 1.4285 37 1 2.9203 3.4487 1.9027 38 1 5.0262 5.9927 -2.1320 39 1 3.7663 5.1215 -1.2254 40 1 4.2475 8.9854 1.4107 41 1 7.3703 5.2222 -1.8781 42 1 7.6314 3.5289 -1.3958 43 1 6.3602 2.7667 -3.3837 44 1 6.0990 4.4600 -3.8659 45 1 7.9275 5.7474 -4.7670 46 1 8.6839 5.5972 -3.1619 47 1 10.6753 4.5582 -4.1689 48 1 10.3537 6.1251 -4.9507 49 1 10.0532 2.5115 -5.3937 50 1 9.3113 2.6974 -7.0013 51 1 7.6275 2.1217 -5.2416 52 1 7.3065 3.7058 -5.9882 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604538452.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:14 Heat of formation + Delta-G solvation = -134.795362 kcal Electronic energy + Delta-G solvation = -31447.271927 eV Core-core repulsion = 27253.038592 eV Total energy + Delta-G solvation = -4194.233335 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.61435 -40.63568 -40.19854 -37.59259 -36.52175 -36.05072 -34.57537 -33.81415 -32.29306 -31.95289 -30.87585 -29.60218 -27.45937 -26.04159 -25.03822 -24.76018 -24.37510 -22.85859 -21.37733 -21.31699 -20.15523 -19.07770 -18.71387 -18.01494 -17.53345 -17.38236 -17.09869 -16.67027 -16.47381 -16.28242 -16.14624 -15.98385 -15.83670 -15.46529 -15.15345 -14.80804 -14.66432 -14.51730 -14.42056 -14.22751 -13.75701 -13.63962 -13.36466 -13.31735 -13.20523 -13.04653 -12.88200 -12.70921 -12.61975 -12.49602 -12.46553 -12.32500 -12.14509 -12.00877 -11.87166 -11.70552 -11.47532 -11.00217 -10.85980 -10.76979 -10.70058 -10.20829 -9.65353 -9.43770 -8.32178 -6.37145 1.34740 1.39136 1.42850 1.43601 1.63429 1.78584 2.30157 2.34766 2.81277 2.97170 3.01766 3.40506 3.76295 3.80853 3.90342 3.96870 4.00825 4.05721 4.16800 4.18534 4.24933 4.30000 4.30139 4.35565 4.42786 4.55115 4.60751 4.64855 4.68920 4.71610 4.74653 4.76771 4.80730 4.87470 4.89322 4.95619 5.00804 5.01162 5.08153 5.21654 5.34541 5.39196 5.42423 5.51619 5.84204 5.89647 6.12682 6.16124 6.43641 6.51871 6.67065 7.04456 7.23206 7.27136 8.82953 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.007944 B = 0.003806 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3523.741138 B = 7355.509848 C = 9847.207784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.133 4.133 3 C 0.504 3.496 4 O -0.585 6.585 5 N -0.709 5.709 6 C 0.134 3.866 7 H 0.094 0.906 8 C -0.151 4.151 9 C 0.521 3.479 10 O -0.571 6.571 11 N -0.586 5.586 12 C 0.213 3.787 13 C -0.529 4.529 14 H 0.043 0.957 15 C 0.031 3.969 16 N -0.933 5.933 17 Si 0.922 3.078 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.241 1.241 21 C 0.126 3.874 22 C 0.059 3.941 23 N -0.539 5.539 24 C 0.010 3.990 25 C 0.067 3.933 26 O -0.403 6.403 27 C 0.065 3.935 28 C 0.018 3.982 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.090 0.910 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.416 0.584 35 H 0.058 0.942 36 H 0.079 0.921 37 H 0.061 0.939 38 H 0.047 0.953 39 H 0.038 0.962 40 H 0.268 0.732 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.034 0.966 45 H 0.037 0.963 46 H 0.089 0.911 47 H 0.064 0.936 48 H 0.114 0.886 49 H 0.063 0.937 50 H 0.119 0.881 51 H 0.096 0.904 52 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.128 -14.683 -11.469 18.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.173 4.173 3 C 0.293 3.707 4 O -0.465 6.465 5 N -0.363 5.363 6 C 0.025 3.975 7 H 0.112 0.888 8 C -0.209 4.209 9 C 0.308 3.692 10 O -0.452 6.452 11 N -0.316 5.316 12 C 0.091 3.909 13 C -0.568 4.568 14 H 0.062 0.938 15 C -0.169 4.169 16 N -0.572 5.572 17 Si 0.746 3.254 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.165 1.165 21 C 0.003 3.997 22 C -0.071 4.071 23 N -0.265 5.265 24 C -0.118 4.118 25 C -0.010 4.010 26 O -0.322 6.322 27 C -0.012 4.012 28 C -0.110 4.110 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.109 0.891 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.254 0.746 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.080 0.920 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.077 0.923 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.091 0.909 44 H 0.052 0.948 45 H 0.056 0.944 46 H 0.107 0.893 47 H 0.082 0.918 48 H 0.132 0.868 49 H 0.081 0.919 50 H 0.137 0.863 51 H 0.114 0.886 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 2.311 -14.528 -11.249 18.519 hybrid contribution -0.979 1.158 -0.045 1.518 sum 1.331 -13.370 -11.294 17.552 Atomic orbital electron populations 1.21542 0.93135 1.02809 1.01883 1.21705 0.98311 0.90421 1.06844 1.21741 0.81124 0.93582 0.74234 1.90703 1.56147 1.48371 1.51309 1.45925 1.07892 1.07422 1.75098 1.20583 0.92830 0.85464 0.98585 0.88787 1.22039 1.01991 1.03296 0.93590 1.20516 0.88888 0.82477 0.77290 1.90592 1.57386 1.36482 1.60738 1.47815 1.19953 1.12186 1.51658 1.19746 0.90891 0.82958 0.97336 1.21332 1.22889 1.05343 1.07216 0.93833 1.25551 0.98384 0.96325 0.96626 1.70004 1.43444 1.14943 1.28784 0.86087 0.80063 0.78089 0.81135 1.19729 1.20765 1.16471 1.21287 0.84288 1.02363 0.91759 1.22255 0.89845 1.01094 0.93859 1.62130 1.25408 1.18645 1.20305 1.22931 0.97588 0.89313 1.01940 1.22740 0.94724 0.99092 0.84437 1.87948 1.85496 1.28545 1.30243 1.22791 0.92505 0.83579 1.02307 1.22859 0.98820 1.00672 0.88670 0.93609 0.93565 0.89136 0.86289 0.86257 0.74640 0.92289 0.90243 0.91961 0.93541 0.94420 0.92252 0.90362 0.90501 0.90871 0.94796 0.94437 0.89289 0.91797 0.86814 0.91864 0.86311 0.88620 0.94409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.20 71.98 0.66 -1.81 16 2 C -0.13 -2.32 6.42 29.85 0.19 -2.13 16 3 C 0.50 14.52 7.79 87.66 0.68 15.20 16 4 O -0.59 -22.30 15.64 -3.02 -0.05 -22.35 16 5 N -0.71 -20.92 5.06 -446.10 -2.26 -23.17 16 6 C 0.13 4.91 2.30 44.24 0.10 5.01 16 7 H 0.09 3.77 5.47 -2.39 -0.01 3.76 16 8 C -0.15 -5.86 9.46 71.98 0.68 -5.18 16 9 C 0.52 19.90 6.84 87.66 0.60 20.50 16 10 O -0.57 -22.51 15.63 -3.06 -0.05 -22.56 16 11 N -0.59 -22.53 2.46 -826.15 -2.03 -24.56 16 12 C 0.21 8.97 4.08 85.63 0.35 9.31 16 13 C -0.53 -26.99 7.72 25.60 0.20 -26.79 16 14 H 0.04 2.53 7.99 -2.91 -0.02 2.50 16 15 C 0.03 1.66 5.47 84.66 0.46 2.13 16 16 N -0.93 -54.06 13.96 21.45 0.30 -53.76 16 17 Si 0.92 40.48 27.47 68.60 1.88 42.36 16 18 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 19 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 20 H -0.24 -9.56 6.54 99.48 0.65 -8.91 16 21 C 0.13 4.26 5.38 86.38 0.46 4.73 16 22 C 0.06 1.67 5.28 86.30 0.46 2.12 16 23 N -0.54 -13.50 4.73 -895.22 -4.23 -17.73 16 24 C 0.01 0.25 5.44 86.31 0.47 0.71 16 25 C 0.07 1.36 7.01 72.02 0.50 1.86 16 26 O -0.40 -9.00 10.83 -148.98 -1.61 -10.62 16 27 C 0.06 1.17 7.01 72.01 0.50 1.67 16 28 C 0.02 0.36 5.64 86.31 0.49 0.85 16 29 H 0.04 0.98 8.10 -2.39 -0.02 0.96 16 30 H 0.05 0.97 8.10 -2.38 -0.02 0.95 16 31 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.42 10.56 7.83 -92.71 -0.73 9.84 16 35 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.08 3.63 5.65 -2.39 -0.01 3.62 16 37 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 38 H 0.05 1.88 7.12 -2.39 -0.02 1.86 16 39 H 0.04 1.59 5.25 -2.39 -0.01 1.58 16 40 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 41 H 0.08 2.68 6.44 -2.39 -0.02 2.66 16 42 H 0.08 2.76 7.36 -2.39 -0.02 2.74 16 43 H 0.07 2.13 8.04 -2.39 -0.02 2.11 16 44 H 0.03 0.99 8.12 -2.39 -0.02 0.97 16 45 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.09 2.18 6.38 -2.39 -0.02 2.16 16 47 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 48 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 49 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 50 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 51 H 0.10 1.75 8.09 -2.39 -0.02 1.73 16 52 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -67.66 409.36 -1.10 -68.76 By element: Atomic # 1 Polarization: 35.32 SS G_CDS: 0.13 Total: 35.45 kcal Atomic # 6 Polarization: 21.38 SS G_CDS: 6.82 Total: 28.19 kcal Atomic # 7 Polarization: -111.01 SS G_CDS: -8.22 Total: -119.23 kcal Atomic # 8 Polarization: -53.82 SS G_CDS: -1.71 Total: -55.53 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 1.88 Total: 42.36 kcal Total: -67.66 -1.10 -68.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604538452.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.040 kcal (2) G-P(sol) polarization free energy of solvation -67.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds