Wall clock time and date at job start Wed Apr 1 2020 00:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47061 * 2 1 4 4 O 1.45197 * 109.47243 * 119.99877 * 2 1 3 5 5 C 1.34224 * 116.99912 * 89.99808 * 4 2 1 6 6 O 1.20822 * 120.00210 * 0.02562 * 5 4 2 7 7 C 1.50704 * 119.99932 * 179.97438 * 5 4 2 8 8 C 1.52998 * 109.47151 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47191 * 180.02562 * 8 7 5 10 10 N 1.46501 * 109.47074 * 179.97438 * 9 8 7 11 11 C 1.34783 * 119.99874 * 180.02562 * 10 9 8 12 12 O 1.21585 * 119.99991 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99707 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99730 * 179.97438 * 13 11 10 15 15 C 1.53081 * 109.43848 * 84.79387 * 14 13 11 16 16 C 1.53190 * 109.29209 * 181.23616 * 15 14 13 17 17 N 1.46921 * 108.89311 * 305.57883 * 16 15 14 18 18 C 1.36940 * 120.63187 * 233.51481 * 17 16 15 19 19 H 1.08001 * 120.00319 * 152.61971 * 18 17 16 20 20 C 1.38813 * 119.99903 * 332.62203 * 18 17 16 21 21 N 1.31624 * 120.00070 * 159.34992 * 20 18 17 22 22 Si 1.86800 * 120.00077 * 339.35529 * 20 18 17 23 23 H 1.48494 * 109.47321 * 92.87851 * 22 20 18 24 24 H 1.48501 * 109.47194 * 212.88430 * 22 20 18 25 25 H 1.48509 * 109.46983 * 332.87654 * 22 20 18 26 26 C 1.46923 * 118.74178 * 53.54201 * 17 16 15 27 27 C 1.53035 * 109.45960 * 204.99782 * 14 13 11 28 28 H 1.09001 * 109.46773 * 60.00379 * 1 2 3 29 29 H 1.09003 * 109.46671 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47412 * 300.00083 * 1 2 3 31 31 H 1.09003 * 109.47058 * 240.00125 * 2 1 3 32 32 H 1.08996 * 109.47624 * 180.02562 * 3 2 1 33 33 H 1.09006 * 109.47209 * 300.00193 * 3 2 1 34 34 H 1.09001 * 109.47481 * 59.99481 * 3 2 1 35 35 H 1.09004 * 109.47031 * 60.00529 * 7 5 4 36 36 H 1.08996 * 109.47398 * 300.00646 * 7 5 4 37 37 H 1.08996 * 109.47581 * 60.00106 * 8 7 5 38 38 H 1.09003 * 109.47079 * 300.00101 * 8 7 5 39 39 H 1.09004 * 109.47014 * 60.00226 * 9 8 7 40 40 H 1.08996 * 109.47375 * 300.00367 * 9 8 7 41 41 H 0.97001 * 120.00469 * 0.02562 * 10 9 8 42 42 H 0.96998 * 120.00063 * 359.97438 * 13 11 10 43 43 H 1.08998 * 109.46073 * 324.97324 * 14 13 11 44 44 H 1.08992 * 109.38800 * 61.36034 * 15 14 13 45 45 H 1.09002 * 109.61927 * 301.25313 * 15 14 13 46 46 H 1.08999 * 109.58729 * 185.71870 * 16 15 14 47 47 H 1.09004 * 109.58886 * 65.43758 * 16 15 14 48 48 H 0.97001 * 119.99914 * 180.02562 * 21 20 18 49 49 H 1.09004 * 109.59094 * 66.17180 * 26 17 16 50 50 H 1.09001 * 109.59077 * 186.46452 * 26 17 16 51 51 H 1.09002 * 109.49848 * 58.67960 * 27 14 13 52 52 H 1.09002 * 109.52425 * 298.59433 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0141 -0.6844 1.1855 5 6 2.2172 -2.0074 1.0851 6 8 1.9982 -2.5747 0.0411 7 6 2.7194 -2.7851 2.2743 8 6 2.8645 -4.2601 1.8948 9 6 3.3737 -5.0497 3.1023 10 7 3.5120 -6.4622 2.7391 11 6 3.9483 -7.3531 3.6516 12 8 4.2275 -6.9844 4.7760 13 7 4.0760 -8.6525 3.3172 14 6 4.5508 -9.6207 4.3089 15 6 3.3706 -10.1015 5.1571 16 6 3.8755 -11.0902 6.2127 17 7 4.6172 -12.1659 5.5409 18 6 4.2917 -13.4783 5.7572 19 1 4.4906 -14.2168 4.9946 20 6 3.7062 -13.8596 6.9566 21 7 3.0313 -14.9873 7.0304 22 14 3.8758 -12.7722 8.4660 23 1 2.7124 -11.8530 8.5472 24 1 3.9227 -13.6201 9.6843 25 1 5.1274 -11.9791 8.3666 26 6 5.7151 -11.8068 4.6329 27 6 5.1893 -10.8128 3.5925 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 3.1300 1.4426 -0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 2.0105 -2.6892 3.0968 36 1 3.6884 -2.3925 2.5823 37 1 3.5734 -4.3558 1.0725 38 1 1.8955 -4.6530 1.5867 39 1 2.6643 -4.9541 3.9244 40 1 4.3425 -4.6570 3.4110 41 1 3.2896 -6.7564 1.8419 42 1 3.8536 -8.9465 2.4201 43 1 5.2899 -9.1465 4.9545 44 1 2.6413 -10.5955 4.5153 45 1 2.9034 -9.2493 5.6507 46 1 3.0281 -11.5126 6.7527 47 1 4.5336 -10.5740 6.9117 48 1 2.6219 -15.2535 7.8685 49 1 6.5238 -11.3473 5.2012 50 1 6.0831 -12.7024 4.1323 51 1 6.0152 -10.4646 2.9721 52 1 4.4444 -11.3025 2.9653 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613212812.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:44 Heat of formation + Delta-G solvation = -110.069961 kcal Electronic energy + Delta-G solvation = -29233.303917 eV Core-core repulsion = 25040.142756 eV Total energy + Delta-G solvation = -4193.161161 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.05348 -40.04373 -37.91002 -37.50056 -35.86354 -34.45686 -33.79570 -33.00933 -31.98464 -30.36882 -30.01440 -27.87167 -27.59259 -24.90351 -23.42653 -22.80223 -21.99279 -21.79136 -20.98729 -20.53523 -19.70790 -18.37458 -18.00595 -17.08722 -16.93121 -16.74615 -16.18303 -15.87291 -15.26264 -14.99870 -14.66609 -14.50788 -14.16950 -14.11196 -14.00537 -13.77837 -13.69137 -13.25694 -12.89803 -12.89520 -12.85170 -12.69951 -12.62633 -12.27923 -12.27305 -11.94670 -11.89726 -11.74983 -11.48661 -11.43223 -11.10302 -11.01530 -10.86801 -10.81057 -10.56687 -10.19819 -10.08880 -9.97845 -9.76401 -9.47117 -9.23181 -8.69147 -8.54658 -6.96482 -5.92674 -3.28527 1.75119 2.10821 2.75779 3.30889 3.37840 3.53057 3.57276 4.07474 4.18767 4.21273 4.32289 4.44252 4.48022 4.56350 4.56893 4.71210 4.95534 4.98975 5.00423 5.03038 5.13789 5.17096 5.20122 5.27343 5.31726 5.34382 5.46318 5.46623 5.56709 5.64564 5.70117 5.72507 5.86854 6.03448 6.07205 6.16356 6.18492 6.35311 6.35840 6.46976 6.59145 6.67997 6.72013 6.80513 6.90360 7.05807 7.29446 7.98303 8.07607 8.34684 8.68989 8.96163 9.74640 10.12279 11.23140 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.030289 B = 0.001509 C = 0.001488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.201514 B =18549.385151 C =18815.505720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.079 3.921 3 C -0.150 4.150 4 O -0.354 6.354 5 C 0.463 3.537 6 O -0.508 6.508 7 C -0.111 4.111 8 C -0.121 4.121 9 C 0.140 3.860 10 N -0.752 5.752 11 C 0.702 3.298 12 O -0.590 6.590 13 N -0.739 5.739 14 C 0.169 3.831 15 C -0.141 4.141 16 C 0.128 3.872 17 N -0.606 5.606 18 C -0.261 4.261 19 H 0.086 0.914 20 C 0.024 3.976 21 N -0.909 5.909 22 Si 0.882 3.118 23 H -0.288 1.288 24 H -0.303 1.303 25 H -0.270 1.270 26 C 0.152 3.848 27 C -0.140 4.140 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.396 0.604 42 H 0.392 0.608 43 H 0.082 0.918 44 H 0.063 0.937 45 H 0.058 0.942 46 H 0.074 0.926 47 H 0.027 0.973 48 H 0.262 0.738 49 H 0.025 0.975 50 H 0.068 0.932 51 H 0.060 0.940 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.817 31.321 -16.154 35.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.025 3.975 3 C -0.208 4.208 4 O -0.272 6.272 5 C 0.306 3.694 6 O -0.395 6.395 7 C -0.149 4.149 8 C -0.159 4.159 9 C 0.015 3.985 10 N -0.409 5.409 11 C 0.402 3.598 12 O -0.468 6.468 13 N -0.393 5.393 14 C 0.065 3.935 15 C -0.181 4.181 16 C 0.002 3.998 17 N -0.330 5.330 18 C -0.389 4.389 19 H 0.103 0.897 20 C -0.175 4.175 21 N -0.552 5.552 22 Si 0.712 3.288 23 H -0.216 1.216 24 H -0.232 1.232 25 H -0.195 1.195 26 C 0.025 3.975 27 C -0.180 4.180 28 H 0.094 0.906 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.229 0.771 42 H 0.225 0.775 43 H 0.100 0.900 44 H 0.082 0.918 45 H 0.077 0.923 46 H 0.092 0.908 47 H 0.045 0.955 48 H 0.072 0.928 49 H 0.043 0.957 50 H 0.086 0.914 51 H 0.078 0.922 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.701 31.378 -15.320 34.960 hybrid contribution -0.394 0.322 -0.107 0.520 sum -2.095 31.700 -15.426 35.317 Atomic orbital electron populations 1.22218 0.94182 1.03170 1.03231 1.22761 0.94708 0.93118 0.86940 1.21900 1.02160 0.93390 1.03301 1.86573 1.76950 1.22337 1.41321 1.23747 0.74199 0.81275 0.90220 1.90673 1.47919 1.70005 1.30938 1.21282 1.04497 0.94098 0.95033 1.21613 1.03574 0.92296 0.98450 1.21074 1.01576 0.79420 0.96388 1.45070 1.73131 1.07877 1.14791 1.15979 0.78355 0.81033 0.84420 1.90928 1.56957 1.78985 1.19959 1.45456 1.71715 1.06158 1.15959 1.20859 0.96190 0.87379 0.89123 1.22409 0.97736 0.98994 0.99000 1.21314 0.95762 0.89133 0.93559 1.44400 1.34140 1.02581 1.51904 1.18918 1.37171 0.83311 0.99517 0.89659 1.25268 0.98738 0.95914 0.97553 1.69840 1.34742 1.24145 1.26445 0.86969 0.78616 0.79572 0.83629 1.21587 1.23152 1.19462 1.20862 0.89842 0.96089 0.90681 1.22335 1.00148 0.96113 0.99405 0.90608 0.91920 0.91416 0.89692 0.91622 0.90297 0.91269 0.87069 0.87099 0.90212 0.90185 0.91372 0.91406 0.77098 0.77458 0.89974 0.91781 0.92318 0.90807 0.95478 0.92793 0.95698 0.91374 0.92166 0.91417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.89 9.55 37.16 0.35 -0.54 16 2 C 0.08 0.48 3.18 -26.73 -0.09 0.40 16 3 C -0.15 -0.59 9.57 37.16 0.36 -0.23 16 4 O -0.35 -2.63 9.88 -39.24 -0.39 -3.02 16 5 C 0.46 3.59 7.93 36.01 0.29 3.88 16 6 O -0.51 -5.31 15.20 -18.75 -0.28 -5.59 16 7 C -0.11 -0.57 5.81 -27.88 -0.16 -0.73 16 8 C -0.12 -0.74 4.62 -26.73 -0.12 -0.87 16 9 C 0.14 1.16 5.67 -4.04 -0.02 1.14 16 10 N -0.75 -7.42 5.56 -65.22 -0.36 -7.78 16 11 C 0.70 10.03 8.53 -86.91 -0.74 9.29 16 12 O -0.59 -11.04 16.01 5.29 0.08 -10.95 16 13 N -0.74 -9.80 5.08 -58.61 -0.30 -10.09 16 14 C 0.17 2.77 2.41 -67.87 -0.16 2.61 16 15 C -0.14 -2.68 5.66 -26.59 -0.15 -2.83 16 16 C 0.13 2.92 4.20 -3.71 -0.02 2.90 16 17 N -0.61 -14.45 2.77 -172.32 -0.48 -14.93 16 18 C -0.26 -7.30 10.03 -15.06 -0.15 -7.45 16 19 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 20 C 0.02 0.71 5.23 -17.43 -0.09 0.61 16 21 N -0.91 -28.02 13.97 55.49 0.78 -27.25 16 22 Si 0.88 22.90 24.34 -169.99 -4.14 18.76 16 23 H -0.29 -7.29 6.62 56.52 0.37 -6.92 16 24 H -0.30 -7.97 7.11 56.52 0.40 -7.57 16 25 H -0.27 -6.92 6.64 56.52 0.38 -6.55 16 26 C 0.15 2.93 6.52 -3.71 -0.02 2.90 16 27 C -0.14 -2.18 5.55 -26.61 -0.15 -2.32 16 28 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.09 0.59 7.16 -51.93 -0.37 0.22 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 34 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.08 0.51 8.10 -51.93 -0.42 0.09 16 38 H 0.08 0.53 8.10 -51.93 -0.42 0.11 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.40 2.84 8.49 -40.82 -0.35 2.49 16 42 H 0.39 4.00 8.62 -40.82 -0.35 3.65 16 43 H 0.08 1.51 7.58 -51.93 -0.39 1.11 16 44 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.07 1.83 4.50 -51.93 -0.23 1.60 16 47 H 0.03 0.63 7.07 -51.93 -0.37 0.26 16 48 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 49 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.07 1.28 7.93 -51.93 -0.41 0.87 16 51 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 52 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 413.68 15.07 6.23 6.23 Total: -1.00 -35.96 413.68 -9.01 -44.97 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -9.27 Total: 0.90 kcal Atomic # 6 Polarization: 9.63 SS G_CDS: -0.88 Total: 8.75 kcal Atomic # 7 Polarization: -59.69 SS G_CDS: -0.36 Total: -60.05 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.59 Total: -19.56 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -4.14 Total: 18.76 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -35.96 -9.01 -44.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613212812.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.099 kcal (2) G-P(sol) polarization free energy of solvation -35.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds