Wall clock time and date at job start Wed Apr 1 2020 00:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47061 * 2 1 4 4 O 1.45197 * 109.47243 * 119.99877 * 2 1 3 5 5 C 1.34224 * 116.99912 * 89.99808 * 4 2 1 6 6 O 1.20822 * 120.00210 * 0.02562 * 5 4 2 7 7 C 1.50704 * 119.99932 * 179.97438 * 5 4 2 8 8 C 1.52998 * 109.47151 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47191 * 180.02562 * 8 7 5 10 10 N 1.46501 * 109.47074 * 179.97438 * 9 8 7 11 11 C 1.34783 * 119.99874 * 180.02562 * 10 9 8 12 12 O 1.21585 * 119.99991 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99707 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99730 * 179.97438 * 13 11 10 15 15 C 1.53081 * 109.43848 * 84.79387 * 14 13 11 16 16 C 1.53190 * 109.29209 * 181.23616 * 15 14 13 17 17 N 1.46921 * 108.89311 * 305.57883 * 16 15 14 18 18 C 1.36940 * 120.63187 * 233.51481 * 17 16 15 19 19 H 1.08001 * 120.00319 * 152.61971 * 18 17 16 20 20 C 1.38813 * 119.99903 * 332.62203 * 18 17 16 21 21 N 1.31624 * 120.00070 * 159.34992 * 20 18 17 22 22 Si 1.86800 * 120.00077 * 339.35529 * 20 18 17 23 23 H 1.48494 * 109.47321 * 92.87851 * 22 20 18 24 24 H 1.48501 * 109.47194 * 212.88430 * 22 20 18 25 25 H 1.48509 * 109.46983 * 332.87654 * 22 20 18 26 26 C 1.46923 * 118.74178 * 53.54201 * 17 16 15 27 27 C 1.53035 * 109.45960 * 204.99782 * 14 13 11 28 28 H 1.09001 * 109.46773 * 60.00379 * 1 2 3 29 29 H 1.09003 * 109.46671 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47412 * 300.00083 * 1 2 3 31 31 H 1.09003 * 109.47058 * 240.00125 * 2 1 3 32 32 H 1.08996 * 109.47624 * 180.02562 * 3 2 1 33 33 H 1.09006 * 109.47209 * 300.00193 * 3 2 1 34 34 H 1.09001 * 109.47481 * 59.99481 * 3 2 1 35 35 H 1.09004 * 109.47031 * 60.00529 * 7 5 4 36 36 H 1.08996 * 109.47398 * 300.00646 * 7 5 4 37 37 H 1.08996 * 109.47581 * 60.00106 * 8 7 5 38 38 H 1.09003 * 109.47079 * 300.00101 * 8 7 5 39 39 H 1.09004 * 109.47014 * 60.00226 * 9 8 7 40 40 H 1.08996 * 109.47375 * 300.00367 * 9 8 7 41 41 H 0.97001 * 120.00469 * 0.02562 * 10 9 8 42 42 H 0.96998 * 120.00063 * 359.97438 * 13 11 10 43 43 H 1.08998 * 109.46073 * 324.97324 * 14 13 11 44 44 H 1.08992 * 109.38800 * 61.36034 * 15 14 13 45 45 H 1.09002 * 109.61927 * 301.25313 * 15 14 13 46 46 H 1.08999 * 109.58729 * 185.71870 * 16 15 14 47 47 H 1.09004 * 109.58886 * 65.43758 * 16 15 14 48 48 H 0.97001 * 119.99914 * 180.02562 * 21 20 18 49 49 H 1.09004 * 109.59094 * 66.17180 * 26 17 16 50 50 H 1.09001 * 109.59077 * 186.46452 * 26 17 16 51 51 H 1.09002 * 109.49848 * 58.67960 * 27 14 13 52 52 H 1.09002 * 109.52425 * 298.59433 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0141 -0.6844 1.1855 5 6 2.2172 -2.0074 1.0851 6 8 1.9982 -2.5747 0.0411 7 6 2.7194 -2.7851 2.2743 8 6 2.8645 -4.2601 1.8948 9 6 3.3737 -5.0497 3.1023 10 7 3.5120 -6.4622 2.7391 11 6 3.9483 -7.3531 3.6516 12 8 4.2275 -6.9844 4.7760 13 7 4.0760 -8.6525 3.3172 14 6 4.5508 -9.6207 4.3089 15 6 3.3706 -10.1015 5.1571 16 6 3.8755 -11.0902 6.2127 17 7 4.6172 -12.1659 5.5409 18 6 4.2917 -13.4783 5.7572 19 1 4.4906 -14.2168 4.9946 20 6 3.7062 -13.8596 6.9566 21 7 3.0313 -14.9873 7.0304 22 14 3.8758 -12.7722 8.4660 23 1 2.7124 -11.8530 8.5472 24 1 3.9227 -13.6201 9.6843 25 1 5.1274 -11.9791 8.3666 26 6 5.7151 -11.8068 4.6329 27 6 5.1893 -10.8128 3.5925 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 3.1300 1.4426 -0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 2.0105 -2.6892 3.0968 36 1 3.6884 -2.3925 2.5823 37 1 3.5734 -4.3558 1.0725 38 1 1.8955 -4.6530 1.5867 39 1 2.6643 -4.9541 3.9244 40 1 4.3425 -4.6570 3.4110 41 1 3.2896 -6.7564 1.8419 42 1 3.8536 -8.9465 2.4201 43 1 5.2899 -9.1465 4.9545 44 1 2.6413 -10.5955 4.5153 45 1 2.9034 -9.2493 5.6507 46 1 3.0281 -11.5126 6.7527 47 1 4.5336 -10.5740 6.9117 48 1 2.6219 -15.2535 7.8685 49 1 6.5238 -11.3473 5.2012 50 1 6.0831 -12.7024 4.1323 51 1 6.0152 -10.4646 2.9721 52 1 4.4444 -11.3025 2.9653 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613212812.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:43 Heat of formation + Delta-G solvation = -135.285590 kcal Electronic energy + Delta-G solvation = -29234.397349 eV Core-core repulsion = 25040.142756 eV Total energy + Delta-G solvation = -4194.254593 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.63668 -41.18023 -39.34981 -38.13657 -36.75872 -35.92461 -34.37781 -34.08940 -33.47703 -31.95641 -31.57608 -28.38736 -28.21645 -26.62776 -24.44041 -24.21697 -23.40100 -22.37560 -21.83905 -21.37870 -21.19361 -19.27499 -18.91136 -18.64719 -17.78026 -17.58232 -17.30597 -16.80704 -16.66665 -15.95357 -15.77460 -15.64675 -15.41140 -15.29772 -15.15357 -14.81432 -14.61569 -14.51713 -14.22408 -14.05018 -13.85547 -13.47590 -13.39452 -13.30510 -13.16541 -13.08036 -12.72264 -12.68194 -12.55397 -12.51007 -12.20867 -12.03620 -11.95279 -11.91699 -11.74027 -11.64152 -11.47736 -11.46416 -11.43118 -11.24759 -10.74689 -10.29723 -9.72458 -8.95880 -8.16859 -5.47849 1.17723 1.29817 1.40249 1.48905 1.53660 1.86602 2.19548 2.41224 3.04949 3.26569 3.39276 3.57110 3.79645 3.83322 3.92088 3.95416 3.97084 3.99380 4.12114 4.18623 4.26876 4.32961 4.48324 4.52194 4.58397 4.65283 4.69355 4.69893 4.73678 4.74679 4.82649 4.87402 4.89599 4.97225 5.03845 5.08480 5.10174 5.11836 5.16625 5.18905 5.20615 5.44278 5.50879 5.55429 5.59831 5.87455 6.05844 6.13592 6.72698 6.91279 7.14708 7.62143 7.63282 8.03582 9.02735 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.030289 B = 0.001509 C = 0.001488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.201514 B =18549.385151 C =18815.505720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.070 3.930 3 C -0.146 4.146 4 O -0.359 6.359 5 C 0.462 3.538 6 O -0.540 6.540 7 C -0.108 4.108 8 C -0.108 4.108 9 C 0.141 3.859 10 N -0.735 5.735 11 C 0.699 3.301 12 O -0.636 6.636 13 N -0.727 5.727 14 C 0.179 3.821 15 C -0.130 4.130 16 C 0.125 3.875 17 N -0.619 5.619 18 C -0.245 4.245 19 H 0.061 0.939 20 C -0.030 4.030 21 N -0.954 5.954 22 Si 0.938 3.062 23 H -0.281 1.281 24 H -0.309 1.309 25 H -0.265 1.265 26 C 0.143 3.857 27 C -0.124 4.124 28 H 0.092 0.908 29 H 0.044 0.956 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.095 0.905 34 H 0.072 0.928 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.411 0.589 42 H 0.411 0.589 43 H 0.067 0.933 44 H 0.062 0.938 45 H 0.056 0.944 46 H 0.049 0.951 47 H 0.026 0.974 48 H 0.261 0.739 49 H 0.034 0.966 50 H 0.069 0.931 51 H 0.096 0.904 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.293 34.073 -17.482 38.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.016 3.984 3 C -0.203 4.203 4 O -0.276 6.276 5 C 0.307 3.693 6 O -0.430 6.430 7 C -0.145 4.145 8 C -0.146 4.146 9 C 0.016 3.984 10 N -0.392 5.392 11 C 0.398 3.602 12 O -0.517 6.517 13 N -0.382 5.382 14 C 0.073 3.927 15 C -0.170 4.170 16 C 0.000 4.000 17 N -0.344 5.344 18 C -0.375 4.375 19 H 0.079 0.921 20 C -0.225 4.225 21 N -0.601 5.601 22 Si 0.768 3.232 23 H -0.208 1.208 24 H -0.237 1.237 25 H -0.189 1.189 26 C 0.018 3.982 27 C -0.163 4.163 28 H 0.110 0.890 29 H 0.064 0.936 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.114 0.886 34 H 0.091 0.909 35 H 0.146 0.854 36 H 0.148 0.852 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.247 0.753 42 H 0.247 0.753 43 H 0.085 0.915 44 H 0.081 0.919 45 H 0.074 0.926 46 H 0.067 0.933 47 H 0.044 0.956 48 H 0.070 0.930 49 H 0.052 0.948 50 H 0.088 0.912 51 H 0.115 0.885 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.174 34.195 -16.726 38.084 hybrid contribution -0.543 -0.472 0.196 0.746 sum -1.717 33.723 -16.530 37.595 Atomic orbital electron populations 1.22211 0.93609 1.02345 1.04349 1.22966 0.95294 0.94039 0.86080 1.21908 1.02089 0.91971 1.04324 1.86575 1.76818 1.22271 1.41954 1.24215 0.73358 0.81349 0.90382 1.90659 1.49498 1.70525 1.32338 1.21347 1.05876 0.92993 0.94309 1.21454 1.03170 0.92608 0.97321 1.21153 1.01498 0.78590 0.97127 1.44955 1.71529 1.07935 1.14795 1.16154 0.78213 0.81489 0.84300 1.90903 1.58966 1.79755 1.22123 1.45099 1.71444 1.05484 1.16175 1.20528 0.94608 0.88110 0.89433 1.22245 0.98693 0.97776 0.98316 1.21271 0.94790 0.89408 0.94560 1.44529 1.35817 1.01284 1.52739 1.18925 1.35251 0.84840 0.98484 0.92101 1.25815 0.99424 0.97258 1.00047 1.69949 1.36859 1.26333 1.26909 0.86050 0.78850 0.78029 0.80316 1.20831 1.23739 1.18927 1.21110 0.88899 0.97354 0.90829 1.22147 1.01333 0.94573 0.98295 0.88973 0.93647 0.90843 0.90959 0.91727 0.88609 0.90895 0.85444 0.85159 0.90200 0.90566 0.91969 0.91497 0.75258 0.75296 0.91505 0.91883 0.92569 0.93308 0.95626 0.93002 0.94813 0.91226 0.88517 0.91031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.59 9.55 71.98 0.69 -0.91 16 2 C 0.07 0.80 3.18 30.60 0.10 0.89 16 3 C -0.15 -0.92 9.57 71.98 0.69 -0.23 16 4 O -0.36 -4.94 9.88 -51.36 -0.51 -5.44 16 5 C 0.46 6.66 7.93 71.24 0.56 7.22 16 6 O -0.54 -11.00 15.20 21.98 0.33 -10.67 16 7 C -0.11 -0.88 5.81 29.85 0.17 -0.71 16 8 C -0.11 -1.09 4.62 30.59 0.14 -0.95 16 9 C 0.14 2.03 5.67 86.38 0.49 2.52 16 10 N -0.74 -12.65 5.56 -478.52 -2.66 -15.31 16 11 C 0.70 18.37 8.53 179.05 1.53 19.90 16 12 O -0.64 -22.88 16.01 -3.98 -0.06 -22.94 16 13 N -0.73 -17.16 5.08 -457.61 -2.33 -19.48 16 14 C 0.18 5.44 2.41 45.03 0.11 5.55 16 15 C -0.13 -4.75 5.66 30.68 0.17 -4.58 16 16 C 0.13 5.60 4.20 86.36 0.36 5.96 16 17 N -0.62 -29.06 2.77 -699.09 -1.94 -31.00 16 18 C -0.25 -13.86 10.03 84.03 0.84 -13.02 16 19 H 0.06 3.68 8.06 -2.91 -0.02 3.66 16 20 C -0.03 -1.80 5.23 84.86 0.44 -1.36 16 21 N -0.95 -60.30 13.97 21.65 0.30 -60.00 16 22 Si 0.94 48.06 24.34 68.60 1.67 49.73 16 23 H -0.28 -13.92 6.62 99.48 0.66 -13.26 16 24 H -0.31 -15.93 7.11 99.48 0.71 -15.23 16 25 H -0.26 -13.16 6.64 99.48 0.66 -12.50 16 26 C 0.14 5.24 6.52 86.37 0.56 5.80 16 27 C -0.12 -3.46 5.55 30.67 0.17 -3.29 16 28 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.07 0.99 7.16 -2.39 -0.02 0.97 16 32 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.10 0.27 8.14 -2.38 -0.02 0.25 16 34 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.13 0.67 8.14 -2.38 -0.02 0.65 16 36 H 0.13 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.08 0.85 8.10 -2.39 -0.02 0.83 16 38 H 0.08 0.87 8.10 -2.39 -0.02 0.85 16 39 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 40 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.41 4.63 8.49 -92.71 -0.79 3.84 16 42 H 0.41 6.84 8.62 -92.71 -0.80 6.04 16 43 H 0.07 2.31 7.58 -2.39 -0.02 2.29 16 44 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 45 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 46 H 0.05 2.41 4.50 -2.39 -0.01 2.40 16 47 H 0.03 1.16 7.07 -2.38 -0.02 1.14 16 48 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 49 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 50 H 0.07 2.51 7.93 -2.39 -0.02 2.49 16 51 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 52 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -79.36 413.68 1.08 -78.28 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -0.77 Total: 14.02 kcal Atomic # 6 Polarization: 15.78 SS G_CDS: 7.04 Total: 22.81 kcal Atomic # 7 Polarization: -119.17 SS G_CDS: -6.62 Total: -125.79 kcal Atomic # 8 Polarization: -38.82 SS G_CDS: -0.24 Total: -39.06 kcal Atomic # 14 Polarization: 48.06 SS G_CDS: 1.67 Total: 49.73 kcal Total: -79.36 1.08 -78.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613212812.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.002 kcal (2) G-P(sol) polarization free energy of solvation -79.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds