Wall clock time and date at job start Wed Apr 1 2020 01:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42901 * 114.00346 * 2 1 4 4 C 1.52995 * 109.47660 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.51074 * 54.89099 * 4 3 2 6 6 C 1.53291 * 109.51481 * 174.99775 * 4 3 2 7 7 N 1.47156 * 108.38340 * 172.27293 * 6 4 3 8 8 C 1.34779 * 120.97588 * 129.44192 * 7 6 4 9 9 O 1.21587 * 119.99472 * 175.06519 * 8 7 6 10 10 N 1.34769 * 120.00311 * 354.79297 * 8 7 6 11 11 C 1.46505 * 120.00115 * 184.71946 * 10 8 7 12 12 C 1.53039 * 109.45943 * 275.06630 * 11 10 8 13 13 C 1.53195 * 109.31173 * 178.61075 * 12 11 10 14 14 N 1.46930 * 108.77303 * 54.63850 * 13 12 11 15 15 C 1.36929 * 120.63291 * 126.41148 * 14 13 12 16 16 H 1.08005 * 120.00066 * 215.84528 * 15 14 13 17 17 C 1.38813 * 119.99881 * 35.84692 * 15 14 13 18 18 N 1.31614 * 119.99852 * 14.80390 * 17 15 14 19 19 Si 1.86801 * 119.99994 * 194.79993 * 17 15 14 20 20 H 1.48503 * 109.46750 * 60.00027 * 19 17 15 21 21 H 1.48498 * 109.47117 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47580 * 300.00252 * 19 17 15 23 23 C 1.46928 * 118.73686 * 306.38710 * 14 13 12 24 24 C 1.53033 * 109.45994 * 154.99443 * 11 10 8 25 25 C 1.47149 * 118.03775 * 309.71859 * 7 6 4 26 26 C 1.52876 * 108.60732 * 50.22580 * 25 7 6 27 27 H 1.09001 * 109.62367 * 187.89516 * 26 25 7 28 28 C 1.53001 * 109.36948 * 67.81745 * 26 25 7 29 29 O 1.42964 * 109.55026 * 294.77414 * 4 3 2 30 30 H 1.09002 * 109.47519 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47713 * 300.00135 * 1 2 3 32 32 H 1.09001 * 109.47167 * 60.00007 * 1 2 3 33 33 H 1.08997 * 109.47025 * 59.99359 * 3 2 1 34 34 H 1.08998 * 109.46776 * 300.00089 * 3 2 1 35 35 H 1.09000 * 109.68043 * 52.55505 * 6 4 3 36 36 H 1.08993 * 109.68523 * 292.00160 * 6 4 3 37 37 H 0.97002 * 119.99987 * 4.71598 * 10 8 7 38 38 H 1.09004 * 109.45521 * 35.02400 * 11 10 8 39 39 H 1.09000 * 109.49499 * 298.56123 * 12 11 10 40 40 H 1.08996 * 109.49692 * 58.66289 * 12 11 10 41 41 H 1.08997 * 109.58950 * 294.84805 * 13 12 11 42 42 H 1.08996 * 109.58735 * 174.41760 * 13 12 11 43 43 H 0.97011 * 119.99987 * 180.02562 * 18 17 15 44 44 H 1.09002 * 109.58934 * 293.82654 * 23 14 13 45 45 H 1.08997 * 109.58739 * 173.39634 * 23 14 13 46 46 H 1.09003 * 109.50220 * 301.33753 * 24 11 10 47 47 H 1.09009 * 109.49824 * 61.43555 * 24 11 10 48 48 H 1.09001 * 109.67754 * 170.00699 * 25 7 6 49 49 H 1.08994 * 109.68480 * 290.56133 * 25 7 6 50 50 H 1.09006 * 109.46791 * 300.25225 * 28 26 25 51 51 H 1.09005 * 109.47459 * 60.24843 * 28 26 25 52 52 H 1.09001 * 109.47495 * 180.24895 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8520 0.5667 -0.8396 6 6 4.1595 2.5791 -0.1253 7 7 5.6136 2.4556 0.0645 8 6 6.4768 2.9959 -0.8185 9 8 7.6721 2.9615 -0.5987 10 7 6.0153 3.5692 -1.9475 11 6 6.9565 4.0638 -2.9554 12 6 7.3981 5.4823 -2.5881 13 6 8.4084 5.9829 -3.6252 14 7 7.8115 5.8640 -4.9625 15 6 7.7591 6.9447 -5.8017 16 1 6.9088 7.0815 -6.4535 17 6 8.7988 7.8644 -5.8148 18 7 9.9509 7.5631 -5.2545 19 14 8.5626 9.5295 -6.6279 20 1 7.4516 10.2535 -5.9595 21 1 9.8129 10.3215 -6.5062 22 1 8.2354 9.3375 -8.0635 23 6 7.2725 4.5633 -5.3824 24 6 6.2750 4.0785 -4.3255 25 6 6.0972 1.7197 1.2434 26 6 5.3787 0.3717 1.3055 27 1 5.6181 -0.1279 2.2442 28 6 5.8325 -0.4998 0.1327 29 8 3.9673 0.5844 1.2242 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.6886 1.8464 0.8899 34 1 1.6886 1.8463 -0.8900 35 1 3.7444 3.2374 0.6378 36 1 3.9517 2.9863 -1.1147 37 1 5.0600 3.6544 -2.0927 38 1 7.8280 3.4099 -2.9902 39 1 6.5305 6.1420 -2.5774 40 1 7.8624 5.4749 -1.6020 41 1 9.3142 5.3788 -3.5742 42 1 8.6510 7.0265 -3.4249 43 1 10.6774 8.2059 -5.2633 44 1 8.0857 3.8433 -5.4747 45 1 6.7657 4.6701 -6.3414 46 1 5.9400 3.0719 -4.5761 47 1 5.4180 4.7515 -4.2984 48 1 7.1719 1.5580 1.1597 49 1 5.8804 2.2899 2.1466 50 1 5.5944 0.0013 -0.8057 51 1 6.9087 -0.6616 0.1952 52 1 5.3179 -1.4598 0.1728 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615193933.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:32:13 Heat of formation + Delta-G solvation = -85.723160 kcal Electronic energy + Delta-G solvation = -31500.867237 eV Core-core repulsion = 27308.761833 eV Total energy + Delta-G solvation = -4192.105405 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.89439 -39.22369 -37.99242 -37.30648 -34.85700 -34.49480 -33.30466 -32.01241 -30.35914 -29.97236 -29.40660 -27.66076 -26.66237 -25.47092 -24.76105 -23.09782 -22.22834 -21.97046 -20.74511 -19.66491 -19.31894 -18.24138 -17.26894 -16.96578 -16.70422 -16.29552 -16.15628 -15.62203 -15.41462 -15.04632 -14.75934 -14.70220 -14.25304 -14.08336 -13.92921 -13.72211 -13.52170 -13.05066 -12.98744 -12.79124 -12.55814 -12.41361 -12.30527 -12.18306 -11.96567 -11.63556 -11.49752 -11.43808 -11.13173 -10.94869 -10.78014 -10.74140 -10.39444 -10.33673 -10.22776 -10.12041 -10.07120 -10.00162 -9.78420 -9.53357 -8.85933 -8.52713 -8.39405 -6.56684 -5.78766 -3.29851 2.47681 3.17297 3.28930 3.37535 3.38299 3.43642 3.44350 3.87715 4.39635 4.48868 4.50961 4.59060 4.63837 4.78447 4.79058 4.93407 4.94319 5.00383 5.03154 5.10751 5.27809 5.29513 5.32073 5.39642 5.43323 5.45925 5.53777 5.61732 5.65794 5.67262 5.83398 5.94398 6.08580 6.18004 6.25082 6.36463 6.44340 6.58725 6.68100 6.70818 6.76996 6.85359 6.87613 6.96361 7.02994 7.35027 7.63036 7.81258 7.99735 8.50311 8.68045 9.22069 9.82958 10.45156 11.29262 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018445 B = 0.002382 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.694742 B =11752.491740 C =12617.371999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.070 3.930 4 C 0.076 3.924 5 H 0.077 0.923 6 C 0.087 3.913 7 N -0.634 5.634 8 C 0.708 3.292 9 O -0.581 6.581 10 N -0.739 5.739 11 C 0.169 3.831 12 C -0.147 4.147 13 C 0.179 3.821 14 N -0.590 5.590 15 C -0.263 4.263 16 H 0.061 0.939 17 C 0.011 3.989 18 N -0.896 5.896 19 Si 0.902 3.098 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.281 1.281 23 C 0.149 3.851 24 C -0.139 4.139 25 C 0.101 3.899 26 C 0.074 3.926 27 H 0.115 0.885 28 C -0.181 4.181 29 O -0.362 6.362 30 H 0.086 0.914 31 H 0.042 0.958 32 H 0.041 0.959 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.388 0.612 38 H 0.081 0.919 39 H 0.053 0.947 40 H 0.054 0.946 41 H 0.023 0.977 42 H 0.076 0.924 43 H 0.255 0.745 44 H 0.020 0.980 45 H 0.058 0.942 46 H 0.054 0.946 47 H 0.061 0.939 48 H 0.104 0.896 49 H 0.071 0.929 50 H 0.060 0.940 51 H 0.069 0.931 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.467 -15.149 13.120 26.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.301 6.301 3 C -0.007 4.007 4 C 0.017 3.983 5 H 0.095 0.905 6 C -0.037 4.037 7 N -0.373 5.373 8 C 0.410 3.590 9 O -0.458 6.458 10 N -0.395 5.395 11 C 0.065 3.935 12 C -0.187 4.187 13 C 0.052 3.948 14 N -0.313 5.313 15 C -0.392 4.392 16 H 0.079 0.921 17 C -0.189 4.189 18 N -0.539 5.539 19 Si 0.731 3.269 20 H -0.209 1.209 21 H -0.216 1.216 22 H -0.208 1.208 23 C 0.022 3.978 24 C -0.179 4.179 25 C -0.022 4.022 26 C 0.016 3.984 27 H 0.133 0.867 28 C -0.238 4.238 29 O -0.281 6.281 30 H 0.105 0.895 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.107 0.893 37 H 0.223 0.777 38 H 0.099 0.901 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.041 0.959 42 H 0.094 0.906 43 H 0.065 0.935 44 H 0.038 0.962 45 H 0.077 0.923 46 H 0.073 0.927 47 H 0.080 0.920 48 H 0.122 0.878 49 H 0.089 0.911 50 H 0.079 0.921 51 H 0.088 0.912 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -16.379 -15.274 13.388 26.092 hybrid contribution -0.642 1.296 -0.605 1.567 sum -17.020 -13.978 12.783 25.465 Atomic orbital electron populations 1.22763 0.80836 1.02932 1.00023 1.87939 1.19707 1.27018 1.95407 1.22460 0.91259 0.85698 1.01282 1.22417 0.92883 0.93464 0.89520 0.90468 1.22134 0.81525 0.97113 1.02955 1.47197 1.04793 1.59074 1.26245 1.15843 0.84859 0.78340 0.79951 1.90933 1.13604 1.64302 1.76953 1.45704 1.10057 1.64142 1.19563 1.20918 0.91228 0.95845 0.85462 1.22568 1.01015 0.94878 1.00239 1.20649 0.91394 1.00564 0.82179 1.43996 1.69912 1.05129 1.12261 1.19023 1.00769 1.00651 1.18801 0.92146 1.25269 0.94490 0.99987 0.99167 1.70018 1.01959 1.34453 1.47432 0.86403 0.76921 0.84128 0.79429 1.20942 1.21611 1.20756 1.20852 0.93798 0.88640 0.94498 1.22357 1.00219 1.00021 0.95266 1.22081 1.01135 0.91816 0.87213 1.22583 0.80998 0.94655 1.00212 0.86720 1.22354 1.02294 1.00206 0.98978 1.88060 1.22203 1.81188 1.36654 0.89522 0.93963 0.93988 0.92106 0.91448 0.90336 0.89330 0.77682 0.90126 0.92844 0.92712 0.95890 0.90608 0.93475 0.96195 0.92316 0.92731 0.91987 0.87781 0.91061 0.92091 0.91182 0.91672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.38 -3.56 10.67 -39.66 -0.42 -3.99 16 3 C 0.07 0.52 5.61 37.16 0.21 0.73 16 4 C 0.08 0.67 2.67 -26.58 -0.07 0.60 16 5 H 0.08 0.75 6.25 -51.93 -0.32 0.42 16 6 C 0.09 0.75 5.93 -3.53 -0.02 0.73 16 7 N -0.63 -7.41 2.54 -178.27 -0.45 -7.86 16 8 C 0.71 10.91 8.27 -86.92 -0.72 10.19 16 9 O -0.58 -11.39 15.52 5.29 0.08 -11.31 16 10 N -0.74 -10.55 4.99 -58.64 -0.29 -10.84 16 11 C 0.17 2.96 2.38 -67.89 -0.16 2.79 16 12 C -0.15 -2.94 5.65 -26.61 -0.15 -3.09 16 13 C 0.18 4.36 5.26 -3.71 -0.02 4.34 16 14 N -0.59 -14.75 2.95 -172.31 -0.51 -15.25 16 15 C -0.26 -7.17 9.50 -15.06 -0.14 -7.31 16 16 H 0.06 1.61 7.87 -52.48 -0.41 1.20 16 17 C 0.01 0.31 4.92 -17.43 -0.09 0.22 16 18 N -0.90 -26.32 11.66 55.49 0.65 -25.67 16 19 Si 0.90 21.60 29.58 -169.99 -5.03 16.57 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 C 0.15 3.08 6.52 -3.71 -0.02 3.05 16 24 C -0.14 -2.28 5.55 -26.61 -0.15 -2.43 16 25 C 0.10 1.06 5.96 -3.75 -0.02 1.04 16 26 C 0.07 0.67 3.93 -26.79 -0.11 0.57 16 27 H 0.12 0.83 8.14 -51.93 -0.42 0.40 16 28 C -0.18 -1.70 8.79 37.16 0.33 -1.37 16 29 O -0.36 -3.72 10.20 -39.66 -0.40 -4.12 16 30 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.09 0.64 5.66 -51.93 -0.29 0.34 16 37 H 0.39 4.38 6.11 -40.82 -0.25 4.13 16 38 H 0.08 1.60 7.64 -51.93 -0.40 1.20 16 39 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.05 1.13 8.11 -51.93 -0.42 0.71 16 41 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.08 2.05 6.60 -51.93 -0.34 1.71 16 43 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 46 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 47 H 0.06 1.00 8.14 -51.92 -0.42 0.57 16 48 H 0.10 1.23 7.11 -51.93 -0.37 0.86 16 49 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 50 H 0.06 0.66 6.11 -51.93 -0.32 0.34 16 51 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 52 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 401.22 15.07 6.05 6.05 Total: -1.00 -33.77 401.22 -9.37 -43.15 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -9.02 Total: 1.93 kcal Atomic # 6 Polarization: 11.37 SS G_CDS: -0.02 Total: 11.35 kcal Atomic # 7 Polarization: -59.02 SS G_CDS: -0.61 Total: -59.63 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -0.75 Total: -19.41 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.77 -9.37 -43.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615193933.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.575 kcal (2) G-P(sol) polarization free energy of solvation -33.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds