Wall clock time and date at job start Wed Apr 1 2020 01:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42901 * 114.00346 * 2 1 4 4 C 1.52995 * 109.47660 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.51074 * 54.89099 * 4 3 2 6 6 C 1.53291 * 109.51481 * 174.99775 * 4 3 2 7 7 N 1.47156 * 108.38340 * 172.27293 * 6 4 3 8 8 C 1.34779 * 120.97588 * 129.44192 * 7 6 4 9 9 O 1.21587 * 119.99472 * 175.06519 * 8 7 6 10 10 N 1.34769 * 120.00311 * 354.79297 * 8 7 6 11 11 C 1.46505 * 120.00115 * 184.71946 * 10 8 7 12 12 C 1.53039 * 109.45943 * 275.06630 * 11 10 8 13 13 C 1.53195 * 109.31173 * 178.61075 * 12 11 10 14 14 N 1.46930 * 108.77303 * 54.63850 * 13 12 11 15 15 C 1.36929 * 120.63291 * 126.41148 * 14 13 12 16 16 H 1.08005 * 120.00066 * 215.84528 * 15 14 13 17 17 C 1.38813 * 119.99881 * 35.84692 * 15 14 13 18 18 N 1.31614 * 119.99852 * 14.80390 * 17 15 14 19 19 Si 1.86801 * 119.99994 * 194.79993 * 17 15 14 20 20 H 1.48503 * 109.46750 * 60.00027 * 19 17 15 21 21 H 1.48498 * 109.47117 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47580 * 300.00252 * 19 17 15 23 23 C 1.46928 * 118.73686 * 306.38710 * 14 13 12 24 24 C 1.53033 * 109.45994 * 154.99443 * 11 10 8 25 25 C 1.47149 * 118.03775 * 309.71859 * 7 6 4 26 26 C 1.52876 * 108.60732 * 50.22580 * 25 7 6 27 27 H 1.09001 * 109.62367 * 187.89516 * 26 25 7 28 28 C 1.53001 * 109.36948 * 67.81745 * 26 25 7 29 29 O 1.42964 * 109.55026 * 294.77414 * 4 3 2 30 30 H 1.09002 * 109.47519 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47713 * 300.00135 * 1 2 3 32 32 H 1.09001 * 109.47167 * 60.00007 * 1 2 3 33 33 H 1.08997 * 109.47025 * 59.99359 * 3 2 1 34 34 H 1.08998 * 109.46776 * 300.00089 * 3 2 1 35 35 H 1.09000 * 109.68043 * 52.55505 * 6 4 3 36 36 H 1.08993 * 109.68523 * 292.00160 * 6 4 3 37 37 H 0.97002 * 119.99987 * 4.71598 * 10 8 7 38 38 H 1.09004 * 109.45521 * 35.02400 * 11 10 8 39 39 H 1.09000 * 109.49499 * 298.56123 * 12 11 10 40 40 H 1.08996 * 109.49692 * 58.66289 * 12 11 10 41 41 H 1.08997 * 109.58950 * 294.84805 * 13 12 11 42 42 H 1.08996 * 109.58735 * 174.41760 * 13 12 11 43 43 H 0.97011 * 119.99987 * 180.02562 * 18 17 15 44 44 H 1.09002 * 109.58934 * 293.82654 * 23 14 13 45 45 H 1.08997 * 109.58739 * 173.39634 * 23 14 13 46 46 H 1.09003 * 109.50220 * 301.33753 * 24 11 10 47 47 H 1.09009 * 109.49824 * 61.43555 * 24 11 10 48 48 H 1.09001 * 109.67754 * 170.00699 * 25 7 6 49 49 H 1.08994 * 109.68480 * 290.56133 * 25 7 6 50 50 H 1.09006 * 109.46791 * 300.25225 * 28 26 25 51 51 H 1.09005 * 109.47459 * 60.24843 * 28 26 25 52 52 H 1.09001 * 109.47495 * 180.24895 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8520 0.5667 -0.8396 6 6 4.1595 2.5791 -0.1253 7 7 5.6136 2.4556 0.0645 8 6 6.4768 2.9959 -0.8185 9 8 7.6721 2.9615 -0.5987 10 7 6.0153 3.5692 -1.9475 11 6 6.9565 4.0638 -2.9554 12 6 7.3981 5.4823 -2.5881 13 6 8.4084 5.9829 -3.6252 14 7 7.8115 5.8640 -4.9625 15 6 7.7591 6.9447 -5.8017 16 1 6.9088 7.0815 -6.4535 17 6 8.7988 7.8644 -5.8148 18 7 9.9509 7.5631 -5.2545 19 14 8.5626 9.5295 -6.6279 20 1 7.4516 10.2535 -5.9595 21 1 9.8129 10.3215 -6.5062 22 1 8.2354 9.3375 -8.0635 23 6 7.2725 4.5633 -5.3824 24 6 6.2750 4.0785 -4.3255 25 6 6.0972 1.7197 1.2434 26 6 5.3787 0.3717 1.3055 27 1 5.6181 -0.1279 2.2442 28 6 5.8325 -0.4998 0.1327 29 8 3.9673 0.5844 1.2242 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.6886 1.8464 0.8899 34 1 1.6886 1.8463 -0.8900 35 1 3.7444 3.2374 0.6378 36 1 3.9517 2.9863 -1.1147 37 1 5.0600 3.6544 -2.0927 38 1 7.8280 3.4099 -2.9902 39 1 6.5305 6.1420 -2.5774 40 1 7.8624 5.4749 -1.6020 41 1 9.3142 5.3788 -3.5742 42 1 8.6510 7.0265 -3.4249 43 1 10.6774 8.2059 -5.2633 44 1 8.0857 3.8433 -5.4747 45 1 6.7657 4.6701 -6.3414 46 1 5.9400 3.0719 -4.5761 47 1 5.4180 4.7515 -4.2984 48 1 7.1719 1.5580 1.1597 49 1 5.8804 2.2899 2.1466 50 1 5.5944 0.0013 -0.8057 51 1 6.9087 -0.6616 0.1952 52 1 5.3179 -1.4598 0.1728 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000615193933.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:32:12 Heat of formation + Delta-G solvation = -108.987140 kcal Electronic energy + Delta-G solvation = -31501.876039 eV Core-core repulsion = 27308.761833 eV Total energy + Delta-G solvation = -4193.114207 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.87350 -40.27865 -39.00442 -38.45930 -36.08711 -35.83219 -34.22396 -33.64662 -31.76115 -31.36812 -30.77889 -28.27800 -27.66279 -26.59607 -26.02465 -24.03894 -23.90728 -23.38032 -21.80061 -21.15934 -20.35358 -19.42447 -18.62092 -18.03102 -17.64112 -17.25057 -16.96373 -16.81244 -16.41641 -16.21672 -15.93590 -15.53961 -15.52486 -15.37858 -15.19851 -14.96762 -14.87895 -14.72691 -14.25938 -14.01554 -13.70959 -13.29119 -13.21518 -13.12434 -12.99251 -12.91974 -12.65144 -12.58994 -12.52501 -12.36197 -12.14982 -12.07981 -12.05367 -11.89669 -11.62358 -11.56393 -11.41239 -11.16891 -11.04425 -10.59495 -10.57689 -10.13572 -9.47084 -8.60962 -7.87856 -5.42995 1.44599 1.47484 1.50087 1.56688 2.06959 2.50889 2.58335 2.68443 2.93276 3.28356 3.67104 3.68217 3.82841 3.85537 3.92799 3.95431 4.07484 4.12322 4.20150 4.24522 4.33511 4.41785 4.47582 4.48355 4.51056 4.59865 4.62485 4.66260 4.67287 4.79181 4.82294 4.85695 4.86940 4.91703 4.94556 5.03703 5.08354 5.13803 5.18410 5.31979 5.36173 5.40604 5.56563 5.62900 5.66769 5.84208 6.11811 6.26664 6.42368 6.90343 7.14515 7.50984 7.82334 8.40290 9.18230 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018445 B = 0.002382 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.694742 B =11752.491740 C =12617.371999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.412 6.412 3 C 0.070 3.930 4 C 0.077 3.923 5 H 0.067 0.933 6 C 0.085 3.915 7 N -0.627 5.627 8 C 0.705 3.295 9 O -0.629 6.629 10 N -0.725 5.725 11 C 0.182 3.818 12 C -0.129 4.129 13 C 0.189 3.811 14 N -0.607 5.607 15 C -0.269 4.269 16 H 0.070 0.930 17 C -0.047 4.047 18 N -0.935 5.935 19 Si 0.969 3.031 20 H -0.275 1.275 21 H -0.297 1.297 22 H -0.271 1.271 23 C 0.142 3.858 24 C -0.120 4.120 25 C 0.098 3.902 26 C 0.080 3.920 27 H 0.136 0.864 28 C -0.176 4.176 29 O -0.373 6.373 30 H 0.091 0.909 31 H 0.049 0.951 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.107 0.893 37 H 0.407 0.593 38 H 0.054 0.946 39 H 0.062 0.938 40 H 0.043 0.957 41 H -0.010 1.010 42 H 0.041 0.959 43 H 0.250 0.750 44 H 0.009 0.991 45 H 0.068 0.932 46 H 0.090 0.910 47 H 0.077 0.923 48 H 0.086 0.914 49 H 0.083 0.917 50 H 0.046 0.954 51 H 0.067 0.933 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.926 -15.541 13.198 29.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.331 6.331 3 C -0.007 4.007 4 C 0.018 3.982 5 H 0.085 0.915 6 C -0.038 4.038 7 N -0.365 5.365 8 C 0.407 3.593 9 O -0.510 6.510 10 N -0.382 5.382 11 C 0.077 3.923 12 C -0.169 4.169 13 C 0.062 3.938 14 N -0.331 5.331 15 C -0.399 4.399 16 H 0.087 0.913 17 C -0.243 4.243 18 N -0.580 5.580 19 Si 0.796 3.204 20 H -0.201 1.201 21 H -0.224 1.224 22 H -0.196 1.196 23 C 0.017 3.983 24 C -0.160 4.160 25 C -0.025 4.025 26 C 0.022 3.978 27 H 0.153 0.847 28 C -0.234 4.234 29 O -0.292 6.292 30 H 0.110 0.890 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.109 0.891 35 H 0.113 0.887 36 H 0.125 0.875 37 H 0.246 0.754 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.062 0.938 41 H 0.008 0.992 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.027 0.973 45 H 0.086 0.914 46 H 0.109 0.891 47 H 0.096 0.904 48 H 0.105 0.895 49 H 0.101 0.899 50 H 0.065 0.935 51 H 0.086 0.914 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -19.941 -15.702 13.476 28.737 hybrid contribution 0.406 1.329 -0.599 1.513 sum -19.535 -14.373 12.877 27.460 Atomic orbital electron populations 1.22913 0.79353 1.03695 1.01010 1.87889 1.21440 1.28157 1.95653 1.22553 0.89996 0.85405 1.02774 1.22473 0.94033 0.93019 0.88682 0.91481 1.22371 0.79214 0.97596 1.04607 1.47194 1.05885 1.57942 1.25497 1.15989 0.84583 0.78344 0.80408 1.90910 1.16003 1.66062 1.78026 1.45275 1.10477 1.63750 1.18670 1.20512 0.91384 0.93407 0.87031 1.22303 0.99800 0.96850 0.97991 1.20353 0.91643 0.98002 0.83818 1.44241 1.70108 1.06496 1.12228 1.19428 1.00698 1.01330 1.18457 0.91283 1.26094 0.94235 1.03635 1.00340 1.70191 1.02838 1.35439 1.49513 0.85332 0.76496 0.79641 0.78882 1.20090 1.22381 1.19613 1.21040 0.94361 0.86442 0.96502 1.22141 0.98942 1.02241 0.92640 1.22190 1.00417 0.92774 0.87101 1.22613 0.80555 0.93697 1.00977 0.84677 1.22310 1.02237 1.00380 0.98460 1.88058 1.22416 1.81368 1.37400 0.89021 0.93197 0.92725 0.91379 0.89108 0.88701 0.87532 0.75415 0.92783 0.91941 0.93806 0.99208 0.94016 0.94113 0.97308 0.91363 0.89131 0.90436 0.89525 0.89873 0.93541 0.91380 0.91144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 113.37 1.25 1.50 16 2 O -0.41 -6.76 10.67 -144.75 -1.54 -8.30 16 3 C 0.07 0.83 5.61 71.98 0.40 1.23 16 4 C 0.08 1.16 2.67 30.69 0.08 1.24 16 5 H 0.07 1.16 6.25 -2.39 -0.01 1.15 16 6 C 0.09 1.21 5.93 86.35 0.51 1.72 16 7 N -0.63 -13.64 2.54 -836.18 -2.13 -15.76 16 8 C 0.71 21.07 8.27 179.06 1.48 22.55 16 9 O -0.63 -25.10 15.52 -3.99 -0.06 -25.16 16 10 N -0.73 -19.20 4.99 -457.69 -2.29 -21.48 16 11 C 0.18 6.18 2.38 45.01 0.11 6.29 16 12 C -0.13 -5.21 5.65 30.67 0.17 -5.04 16 13 C 0.19 9.56 5.26 86.36 0.45 10.02 16 14 N -0.61 -30.60 2.95 -699.08 -2.06 -32.65 16 15 C -0.27 -14.68 9.50 84.04 0.80 -13.88 16 16 H 0.07 3.60 7.87 -2.91 -0.02 3.57 16 17 C -0.05 -2.64 4.92 84.86 0.42 -2.22 16 18 N -0.94 -56.91 11.66 21.65 0.25 -56.65 16 19 Si 0.97 44.75 29.58 68.60 2.03 46.78 16 20 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 21 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 22 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 23 C 0.14 5.73 6.52 86.36 0.56 6.30 16 24 C -0.12 -3.63 5.55 30.67 0.17 -3.46 16 25 C 0.10 1.95 5.96 86.21 0.51 2.47 16 26 C 0.08 1.32 3.93 30.55 0.12 1.44 16 27 H 0.14 1.68 8.14 -2.39 -0.02 1.66 16 28 C -0.18 -3.16 8.79 71.98 0.63 -2.53 16 29 O -0.37 -6.86 10.20 -144.75 -1.48 -8.33 16 30 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.11 1.10 5.66 -2.39 -0.01 1.09 16 37 H 0.41 7.69 6.11 -92.71 -0.57 7.13 16 38 H 0.05 2.17 7.64 -2.38 -0.02 2.15 16 39 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 40 H 0.04 1.85 8.11 -2.39 -0.02 1.83 16 41 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 42 H 0.04 2.36 6.60 -2.39 -0.02 2.35 16 43 H 0.25 14.77 8.31 -92.70 -0.77 14.00 16 44 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 45 H 0.07 2.60 7.93 -2.39 -0.02 2.58 16 46 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 47 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 48 H 0.09 2.06 7.11 -2.39 -0.02 2.04 16 49 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 50 H 0.05 0.96 6.11 -2.38 -0.01 0.95 16 51 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 52 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -76.07 401.22 0.74 -75.33 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: 0.34 Total: 18.60 kcal Atomic # 6 Polarization: 19.96 SS G_CDS: 7.68 Total: 27.64 kcal Atomic # 7 Polarization: -120.34 SS G_CDS: -6.22 Total: -126.56 kcal Atomic # 8 Polarization: -38.71 SS G_CDS: -3.08 Total: -41.80 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -76.07 0.74 -75.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615193933.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.655 kcal (2) G-P(sol) polarization free energy of solvation -76.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds