Wall clock time and date at job start Wed Apr 1 2020 01:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 114.00057 * 2 1 4 4 C 1.52998 * 109.47238 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.55297 * 304.87394 * 4 3 2 6 6 C 1.52876 * 109.58344 * 184.87924 * 4 3 2 7 7 N 1.47148 * 108.61087 * 187.92200 * 6 4 3 8 8 C 1.34776 * 120.98381 * 230.50619 * 7 6 4 9 9 O 1.21587 * 120.00449 * 174.54950 * 8 7 6 10 10 N 1.34776 * 119.99867 * 354.53998 * 8 7 6 11 11 C 1.46502 * 120.00271 * 184.94559 * 10 8 7 12 12 C 1.53043 * 109.44663 * 84.96746 * 11 10 8 13 13 C 1.53185 * 109.31342 * 181.37908 * 12 11 10 14 14 N 1.46930 * 108.77993 * 305.36777 * 13 12 11 15 15 C 1.36929 * 120.63222 * 233.63221 * 14 13 12 16 16 H 1.07997 * 120.00488 * 31.32433 * 15 14 13 17 17 C 1.38815 * 119.99677 * 211.32825 * 15 14 13 18 18 N 1.31609 * 120.00426 * 9.91191 * 17 15 14 19 19 Si 1.86806 * 119.99868 * 189.91569 * 17 15 14 20 20 H 1.48503 * 109.46996 * 359.97438 * 19 17 15 21 21 H 1.48488 * 109.47354 * 119.99749 * 19 17 15 22 22 H 1.48505 * 109.47060 * 240.00099 * 19 17 15 23 23 C 1.46934 * 118.73441 * 53.60668 * 14 13 12 24 24 C 1.53032 * 109.46269 * 205.03284 * 11 10 8 25 25 C 1.47150 * 118.03491 * 50.22623 * 7 6 4 26 26 C 1.53298 * 108.38568 * 309.71914 * 25 7 6 27 27 H 1.09000 * 109.51117 * 172.22977 * 26 25 7 28 28 C 1.53000 * 109.51003 * 292.37499 * 26 25 7 29 29 O 1.42958 * 109.51299 * 64.99733 * 4 3 2 30 30 H 1.09003 * 109.46602 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47153 * 299.99675 * 1 2 3 32 32 H 1.08991 * 109.47074 * 60.00355 * 1 2 3 33 33 H 1.08996 * 109.47055 * 59.99723 * 3 2 1 34 34 H 1.08999 * 109.46949 * 299.99932 * 3 2 1 35 35 H 1.09004 * 109.61754 * 68.09994 * 6 4 3 36 36 H 1.08998 * 109.52368 * 307.68889 * 6 4 3 37 37 H 0.97001 * 120.00180 * 4.95492 * 10 8 7 38 38 H 1.09004 * 109.45714 * 325.00965 * 11 10 8 39 39 H 1.08999 * 109.50195 * 301.33931 * 12 11 10 40 40 H 1.09007 * 109.49396 * 61.43111 * 12 11 10 41 41 H 1.08999 * 109.58818 * 185.57947 * 13 12 11 42 42 H 1.09004 * 109.58795 * 65.15790 * 13 12 11 43 43 H 0.97002 * 120.00958 * 180.02562 * 18 17 15 44 44 H 1.08999 * 109.58378 * 186.61044 * 23 14 13 45 45 H 1.08993 * 109.58741 * 66.17934 * 23 14 13 46 46 H 1.09003 * 109.49714 * 298.58103 * 24 11 10 47 47 H 1.08997 * 109.50296 * 58.64641 * 24 11 10 48 48 H 1.09002 * 109.68188 * 69.43928 * 25 7 6 49 49 H 1.09003 * 109.68185 * 189.99323 * 25 7 6 50 50 H 1.09003 * 109.46960 * 60.00354 * 28 26 25 51 51 H 1.09005 * 109.46959 * 179.97438 * 28 26 25 52 52 H 1.09000 * 109.47717 * 300.00273 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8531 0.5703 0.8418 6 6 4.1596 2.5748 0.1219 7 7 5.6134 2.4556 -0.0720 8 6 6.4775 2.9995 0.8077 9 8 7.6718 2.8067 0.6852 10 7 6.0180 3.7572 1.8231 11 6 6.9608 4.4369 2.7150 12 6 7.3735 5.7745 2.0963 13 6 8.3854 6.4667 3.0147 14 7 7.8048 6.5776 4.3599 15 6 7.7412 7.7892 4.9946 16 1 7.6231 8.6951 4.4187 17 6 7.8287 7.8531 6.3785 18 7 8.1662 6.7832 7.0668 19 14 7.4672 9.4577 7.2642 20 1 7.1138 10.5029 6.2702 21 1 6.3322 9.2611 8.2012 22 1 8.6690 9.8848 8.0249 23 6 7.2932 5.3636 5.0107 24 6 6.2934 4.6838 4.0699 25 6 6.0958 1.7197 -1.2514 26 6 5.3773 0.3665 -1.3042 27 1 5.6159 -0.1360 -2.2415 28 6 5.8326 -0.5000 -0.1283 29 8 3.9660 0.5795 -1.2221 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8899 33 1 1.6886 1.8464 0.8899 34 1 1.6886 1.8464 -0.8900 35 1 3.9534 2.9827 1.1115 36 1 3.7401 3.2310 -0.6408 37 1 5.0629 3.8525 1.9635 38 1 7.8438 3.8130 2.8534 39 1 7.8275 5.5996 1.1210 40 1 6.4943 6.4084 1.9805 41 1 8.6075 7.4618 2.6295 42 1 9.3012 5.8772 3.0595 43 1 8.2269 6.8277 8.0338 44 1 6.7945 5.6311 5.9423 45 1 8.1198 4.6842 5.2182 46 1 5.4245 5.3279 3.9354 47 1 5.9783 3.7327 4.4990 48 1 5.8746 2.2882 -2.1547 49 1 7.1713 1.5614 -1.1708 50 1 5.5914 0.0027 0.8083 51 1 5.3210 -1.4618 -0.1663 52 1 6.9094 -0.6582 -0.1889 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615193935.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:32:21 Heat of formation + Delta-G solvation = -84.875085 kcal Electronic energy + Delta-G solvation = -31467.021743 eV Core-core repulsion = 27274.953114 eV Total energy + Delta-G solvation = -4192.068629 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.89444 -39.22653 -37.97978 -37.31296 -34.86712 -34.51459 -33.29495 -32.01751 -30.38326 -30.01375 -29.31011 -27.66150 -26.66407 -25.46768 -24.79031 -23.09255 -22.25512 -21.93090 -20.74055 -19.65636 -19.30957 -18.23688 -17.26952 -16.96407 -16.72206 -16.27972 -16.16482 -15.62349 -15.39543 -15.05269 -14.75065 -14.69580 -14.29913 -14.09855 -13.96354 -13.67024 -13.50979 -13.07402 -12.94309 -12.78264 -12.59446 -12.40927 -12.29516 -12.17273 -11.96059 -11.63118 -11.48612 -11.46229 -11.05743 -10.90292 -10.77584 -10.72149 -10.47785 -10.31900 -10.25426 -10.06193 -10.04974 -9.98616 -9.77937 -9.54801 -8.88249 -8.54295 -8.42978 -6.63538 -5.79622 -3.27421 2.47744 3.14195 3.29126 3.35345 3.41546 3.43139 3.45119 3.88905 4.40063 4.47608 4.52023 4.59944 4.63296 4.79341 4.79793 4.94289 4.95653 5.01589 5.04396 5.11734 5.28606 5.32207 5.34550 5.39116 5.45043 5.50900 5.53927 5.61242 5.61609 5.68294 5.89663 5.96334 6.07609 6.19030 6.28512 6.35742 6.50398 6.57574 6.60616 6.71890 6.78943 6.84386 6.87737 6.98168 7.05158 7.34232 7.65827 7.78054 7.99592 8.46865 8.66526 9.21483 9.82680 10.41213 11.28795 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016661 B = 0.002409 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.188409 B =11621.214997 C =12654.044105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.071 3.929 4 C 0.076 3.924 5 H 0.077 0.923 6 C 0.087 3.913 7 N -0.633 5.633 8 C 0.709 3.291 9 O -0.584 6.584 10 N -0.739 5.739 11 C 0.167 3.833 12 C -0.139 4.139 13 C 0.148 3.852 14 N -0.593 5.593 15 C -0.250 4.250 16 H 0.065 0.935 17 C 0.003 3.997 18 N -0.906 5.906 19 Si 0.905 3.095 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.289 1.289 23 C 0.175 3.825 24 C -0.146 4.146 25 C 0.100 3.900 26 C 0.074 3.926 27 H 0.114 0.886 28 C -0.180 4.180 29 O -0.362 6.362 30 H 0.086 0.914 31 H 0.042 0.958 32 H 0.042 0.958 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.389 0.611 38 H 0.083 0.917 39 H 0.053 0.947 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.021 0.979 43 H 0.254 0.746 44 H 0.094 0.906 45 H 0.021 0.979 46 H 0.058 0.942 47 H 0.053 0.947 48 H 0.072 0.928 49 H 0.105 0.895 50 H 0.060 0.940 51 H 0.064 0.936 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.097 -13.630 -16.271 25.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.301 6.301 3 C -0.007 4.007 4 C 0.017 3.983 5 H 0.095 0.905 6 C -0.038 4.038 7 N -0.373 5.373 8 C 0.411 3.589 9 O -0.462 6.462 10 N -0.394 5.394 11 C 0.063 3.937 12 C -0.179 4.179 13 C 0.021 3.979 14 N -0.316 5.316 15 C -0.380 4.380 16 H 0.083 0.917 17 C -0.196 4.196 18 N -0.550 5.550 19 Si 0.735 3.265 20 H -0.203 1.203 21 H -0.216 1.216 22 H -0.216 1.216 23 C 0.049 3.951 24 C -0.187 4.187 25 C -0.023 4.023 26 C 0.015 3.985 27 H 0.132 0.868 28 C -0.237 4.237 29 O -0.281 6.281 30 H 0.105 0.895 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.107 0.893 36 H 0.096 0.904 37 H 0.224 0.776 38 H 0.101 0.899 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.039 0.961 43 H 0.064 0.936 44 H 0.112 0.888 45 H 0.039 0.961 46 H 0.076 0.924 47 H 0.072 0.928 48 H 0.090 0.910 49 H 0.123 0.877 50 H 0.079 0.921 51 H 0.083 0.917 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.159 -13.945 -16.303 25.168 hybrid contribution -0.784 1.144 0.769 1.586 sum -13.944 -12.800 -15.534 24.487 Atomic orbital electron populations 1.22762 0.80828 1.02934 1.00033 1.87941 1.19713 1.27001 1.95410 1.22455 0.91202 0.85709 1.01298 1.22331 0.92936 0.93440 0.89578 0.90510 1.22047 0.81525 0.97202 1.02978 1.47198 1.04802 1.59066 1.26219 1.15854 0.84844 0.78673 0.79565 1.90913 1.13756 1.65627 1.75877 1.45722 1.10166 1.51968 1.31505 1.20954 0.91773 0.92671 0.88287 1.22396 1.00591 0.96074 0.98854 1.20887 0.93020 0.97807 0.86231 1.44068 1.68234 1.05185 1.14128 1.19228 1.43986 0.85356 0.89462 0.91735 1.25180 0.99810 0.97154 0.97421 1.69960 1.51020 1.27901 1.06151 0.86185 0.77534 0.83220 0.79609 1.20268 1.21611 1.21631 1.20775 0.93184 0.86631 0.94554 1.22562 1.00905 1.00039 0.95146 1.22180 1.01254 0.91858 0.87034 1.22649 0.80985 0.94654 1.00172 0.86785 1.22336 1.02303 1.00167 0.98925 1.88058 1.22221 1.80982 1.36845 0.89523 0.93978 0.93954 0.91421 0.92098 0.89296 0.90365 0.77592 0.89930 0.92867 0.92501 0.92595 0.96128 0.93608 0.88767 0.96093 0.92350 0.92846 0.91025 0.87726 0.92110 0.91703 0.91151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.38 -3.65 10.67 -39.97 -0.43 -4.08 16 3 C 0.07 0.54 5.60 37.16 0.21 0.75 16 4 C 0.08 0.69 2.66 -26.80 -0.07 0.62 16 5 H 0.08 0.77 6.25 -51.93 -0.32 0.45 16 6 C 0.09 0.76 5.83 -3.75 -0.02 0.74 16 7 N -0.63 -7.38 2.54 -178.26 -0.45 -7.83 16 8 C 0.71 10.82 8.28 -86.92 -0.72 10.10 16 9 O -0.58 -11.20 15.44 5.29 0.08 -11.12 16 10 N -0.74 -10.64 4.99 -58.63 -0.29 -10.93 16 11 C 0.17 2.94 2.46 -67.89 -0.17 2.77 16 12 C -0.14 -2.56 5.65 -26.61 -0.15 -2.71 16 13 C 0.15 3.19 6.52 -3.71 -0.02 3.17 16 14 N -0.59 -14.80 2.99 -172.32 -0.51 -15.31 16 15 C -0.25 -6.81 9.59 -15.06 -0.14 -6.95 16 16 H 0.06 1.73 7.85 -52.49 -0.41 1.32 16 17 C 0.00 0.08 5.07 -17.43 -0.09 -0.01 16 18 N -0.91 -25.98 11.00 55.49 0.61 -25.37 16 19 Si 0.90 21.45 29.57 -169.99 -5.03 16.42 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 C 0.18 4.10 5.25 -3.70 -0.02 4.08 16 24 C -0.15 -2.67 5.55 -26.61 -0.15 -2.82 16 25 C 0.10 1.04 6.04 -3.53 -0.02 1.02 16 26 C 0.07 0.68 3.93 -26.58 -0.10 0.57 16 27 H 0.11 0.83 8.14 -51.93 -0.42 0.40 16 28 C -0.18 -1.74 8.81 37.16 0.33 -1.41 16 29 O -0.36 -3.76 10.19 -39.97 -0.41 -4.17 16 30 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.09 0.66 5.78 -51.93 -0.30 0.36 16 36 H 0.08 0.60 8.13 -51.93 -0.42 0.18 16 37 H 0.39 4.53 6.16 -40.82 -0.25 4.28 16 38 H 0.08 1.66 7.51 -51.93 -0.39 1.27 16 39 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 44 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 45 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 48 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 49 H 0.10 1.22 7.06 -51.93 -0.37 0.85 16 50 H 0.06 0.68 6.11 -51.93 -0.32 0.36 16 51 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 52 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 400.24 15.07 6.03 6.03 Total: -1.00 -33.08 400.24 -9.42 -42.50 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -8.99 Total: 2.65 kcal Atomic # 6 Polarization: 11.24 SS G_CDS: -0.03 Total: 11.21 kcal Atomic # 7 Polarization: -58.80 SS G_CDS: -0.65 Total: -59.45 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: -0.75 Total: -19.36 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.08 -9.42 -42.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615193935.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.380 kcal (2) G-P(sol) polarization free energy of solvation -33.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds