Wall clock time and date at job start Wed Apr 1 2020 01:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 114.00057 * 2 1 4 4 C 1.52998 * 109.47238 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.55297 * 304.87394 * 4 3 2 6 6 C 1.52876 * 109.58344 * 184.87924 * 4 3 2 7 7 N 1.47148 * 108.61087 * 187.92200 * 6 4 3 8 8 C 1.34776 * 120.98381 * 230.50619 * 7 6 4 9 9 O 1.21587 * 120.00449 * 174.54950 * 8 7 6 10 10 N 1.34776 * 119.99867 * 354.53998 * 8 7 6 11 11 C 1.46502 * 120.00271 * 184.94559 * 10 8 7 12 12 C 1.53043 * 109.44663 * 84.96746 * 11 10 8 13 13 C 1.53185 * 109.31342 * 181.37908 * 12 11 10 14 14 N 1.46930 * 108.77993 * 305.36777 * 13 12 11 15 15 C 1.36929 * 120.63222 * 233.63221 * 14 13 12 16 16 H 1.07997 * 120.00488 * 31.32433 * 15 14 13 17 17 C 1.38815 * 119.99677 * 211.32825 * 15 14 13 18 18 N 1.31609 * 120.00426 * 9.91191 * 17 15 14 19 19 Si 1.86806 * 119.99868 * 189.91569 * 17 15 14 20 20 H 1.48503 * 109.46996 * 359.97438 * 19 17 15 21 21 H 1.48488 * 109.47354 * 119.99749 * 19 17 15 22 22 H 1.48505 * 109.47060 * 240.00099 * 19 17 15 23 23 C 1.46934 * 118.73441 * 53.60668 * 14 13 12 24 24 C 1.53032 * 109.46269 * 205.03284 * 11 10 8 25 25 C 1.47150 * 118.03491 * 50.22623 * 7 6 4 26 26 C 1.53298 * 108.38568 * 309.71914 * 25 7 6 27 27 H 1.09000 * 109.51117 * 172.22977 * 26 25 7 28 28 C 1.53000 * 109.51003 * 292.37499 * 26 25 7 29 29 O 1.42958 * 109.51299 * 64.99733 * 4 3 2 30 30 H 1.09003 * 109.46602 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47153 * 299.99675 * 1 2 3 32 32 H 1.08991 * 109.47074 * 60.00355 * 1 2 3 33 33 H 1.08996 * 109.47055 * 59.99723 * 3 2 1 34 34 H 1.08999 * 109.46949 * 299.99932 * 3 2 1 35 35 H 1.09004 * 109.61754 * 68.09994 * 6 4 3 36 36 H 1.08998 * 109.52368 * 307.68889 * 6 4 3 37 37 H 0.97001 * 120.00180 * 4.95492 * 10 8 7 38 38 H 1.09004 * 109.45714 * 325.00965 * 11 10 8 39 39 H 1.08999 * 109.50195 * 301.33931 * 12 11 10 40 40 H 1.09007 * 109.49396 * 61.43111 * 12 11 10 41 41 H 1.08999 * 109.58818 * 185.57947 * 13 12 11 42 42 H 1.09004 * 109.58795 * 65.15790 * 13 12 11 43 43 H 0.97002 * 120.00958 * 180.02562 * 18 17 15 44 44 H 1.08999 * 109.58378 * 186.61044 * 23 14 13 45 45 H 1.08993 * 109.58741 * 66.17934 * 23 14 13 46 46 H 1.09003 * 109.49714 * 298.58103 * 24 11 10 47 47 H 1.08997 * 109.50296 * 58.64641 * 24 11 10 48 48 H 1.09002 * 109.68188 * 69.43928 * 25 7 6 49 49 H 1.09003 * 109.68185 * 189.99323 * 25 7 6 50 50 H 1.09003 * 109.46960 * 60.00354 * 28 26 25 51 51 H 1.09005 * 109.46959 * 179.97438 * 28 26 25 52 52 H 1.09000 * 109.47717 * 300.00273 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8531 0.5703 0.8418 6 6 4.1596 2.5748 0.1219 7 7 5.6134 2.4556 -0.0720 8 6 6.4775 2.9995 0.8077 9 8 7.6718 2.8067 0.6852 10 7 6.0180 3.7572 1.8231 11 6 6.9608 4.4369 2.7150 12 6 7.3735 5.7745 2.0963 13 6 8.3854 6.4667 3.0147 14 7 7.8048 6.5776 4.3599 15 6 7.7412 7.7892 4.9946 16 1 7.6231 8.6951 4.4187 17 6 7.8287 7.8531 6.3785 18 7 8.1662 6.7832 7.0668 19 14 7.4672 9.4577 7.2642 20 1 7.1138 10.5029 6.2702 21 1 6.3322 9.2611 8.2012 22 1 8.6690 9.8848 8.0249 23 6 7.2932 5.3636 5.0107 24 6 6.2934 4.6838 4.0699 25 6 6.0958 1.7197 -1.2514 26 6 5.3773 0.3665 -1.3042 27 1 5.6159 -0.1360 -2.2415 28 6 5.8326 -0.5000 -0.1283 29 8 3.9660 0.5795 -1.2221 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8899 33 1 1.6886 1.8464 0.8899 34 1 1.6886 1.8464 -0.8900 35 1 3.9534 2.9827 1.1115 36 1 3.7401 3.2310 -0.6408 37 1 5.0629 3.8525 1.9635 38 1 7.8438 3.8130 2.8534 39 1 7.8275 5.5996 1.1210 40 1 6.4943 6.4084 1.9805 41 1 8.6075 7.4618 2.6295 42 1 9.3012 5.8772 3.0595 43 1 8.2269 6.8277 8.0338 44 1 6.7945 5.6311 5.9423 45 1 8.1198 4.6842 5.2182 46 1 5.4245 5.3279 3.9354 47 1 5.9783 3.7327 4.4990 48 1 5.8746 2.2882 -2.1547 49 1 7.1713 1.5614 -1.1708 50 1 5.5914 0.0027 0.8083 51 1 5.3210 -1.4618 -0.1663 52 1 6.9094 -0.6582 -0.1889 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000615193935.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:32:19 Heat of formation + Delta-G solvation = -107.110460 kcal Electronic energy + Delta-G solvation = -31467.985941 eV Core-core repulsion = 27274.953114 eV Total energy + Delta-G solvation = -4193.032828 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.87033 -40.28320 -39.01539 -38.46519 -36.09318 -35.83877 -34.21625 -33.65027 -31.80990 -31.29810 -30.76632 -28.29071 -27.67384 -26.61376 -26.03280 -24.07063 -23.87452 -23.36208 -21.79736 -21.12913 -20.36812 -19.45327 -18.58947 -18.03666 -17.66342 -17.20855 -17.03714 -16.84512 -16.36349 -16.21158 -15.94054 -15.55004 -15.52918 -15.33614 -15.24625 -14.93875 -14.91344 -14.68627 -14.24536 -14.04959 -13.71844 -13.30513 -13.24016 -13.14215 -12.93928 -12.92327 -12.65345 -12.54793 -12.48670 -12.36692 -12.20605 -12.08798 -11.99129 -11.87747 -11.62250 -11.56342 -11.36493 -11.18744 -11.06282 -10.60657 -10.57554 -10.13913 -9.46911 -8.65395 -7.86581 -5.38147 1.44936 1.48536 1.49813 1.60195 2.05396 2.51433 2.58599 2.68946 2.93125 3.30816 3.66437 3.67657 3.83268 3.85585 3.92744 3.95224 4.05342 4.11460 4.19309 4.24277 4.34021 4.41776 4.46127 4.47837 4.52012 4.58976 4.61531 4.65537 4.65791 4.79832 4.83574 4.85571 4.86504 4.90626 4.93760 5.00496 5.05731 5.15827 5.17583 5.29349 5.36551 5.48527 5.56859 5.65049 5.71730 5.85489 6.11105 6.25606 6.41998 6.89721 7.16091 7.50167 7.83673 8.37942 9.20051 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016661 B = 0.002409 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.188409 B =11621.214997 C =12654.044105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.412 6.412 3 C 0.070 3.930 4 C 0.076 3.924 5 H 0.063 0.937 6 C 0.085 3.915 7 N -0.627 5.627 8 C 0.707 3.293 9 O -0.628 6.628 10 N -0.727 5.727 11 C 0.180 3.820 12 C -0.122 4.122 13 C 0.145 3.855 14 N -0.609 5.609 15 C -0.261 4.261 16 H 0.067 0.933 17 C -0.049 4.049 18 N -0.937 5.937 19 Si 0.971 3.029 20 H -0.266 1.266 21 H -0.287 1.287 22 H -0.294 1.294 23 C 0.180 3.820 24 C -0.128 4.128 25 C 0.098 3.902 26 C 0.079 3.921 27 H 0.136 0.864 28 C -0.176 4.176 29 O -0.373 6.373 30 H 0.091 0.909 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.089 0.911 34 H 0.070 0.930 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.406 0.594 38 H 0.055 0.945 39 H 0.056 0.944 40 H 0.067 0.933 41 H 0.058 0.942 42 H 0.006 0.994 43 H 0.251 0.749 44 H 0.066 0.934 45 H -0.007 1.007 46 H 0.071 0.929 47 H 0.074 0.926 48 H 0.087 0.913 49 H 0.088 0.912 50 H 0.042 0.958 51 H 0.068 0.932 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.575 -13.231 -17.686 27.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.332 6.332 3 C -0.007 4.007 4 C 0.018 3.982 5 H 0.081 0.919 6 C -0.038 4.038 7 N -0.365 5.365 8 C 0.408 3.592 9 O -0.509 6.509 10 N -0.383 5.383 11 C 0.075 3.925 12 C -0.162 4.162 13 C 0.019 3.981 14 N -0.333 5.333 15 C -0.391 4.391 16 H 0.085 0.915 17 C -0.245 4.245 18 N -0.583 5.583 19 Si 0.799 3.201 20 H -0.190 1.190 21 H -0.214 1.214 22 H -0.222 1.222 23 C 0.054 3.946 24 C -0.168 4.168 25 C -0.025 4.025 26 C 0.020 3.980 27 H 0.154 0.846 28 C -0.233 4.233 29 O -0.292 6.292 30 H 0.110 0.890 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.107 0.893 34 H 0.088 0.912 35 H 0.122 0.878 36 H 0.116 0.884 37 H 0.244 0.756 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.024 0.976 43 H 0.060 0.940 44 H 0.085 0.915 45 H 0.011 0.989 46 H 0.090 0.910 47 H 0.093 0.907 48 H 0.105 0.895 49 H 0.107 0.893 50 H 0.062 0.938 51 H 0.087 0.913 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.708 -13.562 -17.765 27.318 hybrid contribution 0.004 0.955 1.157 1.500 sum -15.704 -12.607 -16.608 26.103 Atomic orbital electron populations 1.22914 0.79333 1.03706 1.01020 1.87890 1.21465 1.28163 1.95656 1.22547 0.89959 0.85408 1.02779 1.22378 0.94092 0.93085 0.88687 0.91885 1.22269 0.79385 0.97582 1.04560 1.47201 1.05806 1.58014 1.25506 1.15956 0.84620 0.78699 0.79887 1.90890 1.15936 1.67145 1.76941 1.45306 1.10494 1.51593 1.30895 1.20524 0.91467 0.92007 0.88519 1.22179 0.99885 0.96210 0.97973 1.20968 0.93417 0.98194 0.85553 1.44316 1.68927 1.04989 1.15081 1.19544 1.43368 0.86311 0.89910 0.91508 1.25943 1.00113 1.00236 0.98175 1.70132 1.52321 1.29840 1.06050 0.85150 0.76886 0.79705 0.78346 1.19001 1.21398 1.22150 1.20575 0.93142 0.86067 0.94863 1.22269 0.99523 1.00694 0.94264 1.22300 1.00547 0.92684 0.86972 1.22699 0.80533 0.93877 1.00843 0.84611 1.22294 1.02250 1.00349 0.98414 1.88056 1.22500 1.81163 1.37451 0.89009 0.92828 0.93069 0.89298 0.91161 0.87802 0.88430 0.75566 0.92671 0.92490 0.91458 0.92334 0.97582 0.94006 0.91525 0.98922 0.91008 0.90732 0.89461 0.89333 0.93847 0.91251 0.91326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.52 16 2 O -0.41 -7.09 10.67 -144.45 -1.54 -8.63 16 3 C 0.07 0.88 5.60 71.98 0.40 1.29 16 4 C 0.08 1.21 2.66 30.55 0.08 1.29 16 5 H 0.06 1.18 6.25 -2.39 -0.01 1.17 16 6 C 0.09 1.24 5.83 86.21 0.50 1.74 16 7 N -0.63 -13.48 2.54 -836.15 -2.13 -15.61 16 8 C 0.71 20.74 8.28 179.05 1.48 22.22 16 9 O -0.63 -24.13 15.44 -3.99 -0.06 -24.19 16 10 N -0.73 -19.52 4.99 -457.68 -2.28 -21.81 16 11 C 0.18 6.18 2.46 45.02 0.11 6.29 16 12 C -0.12 -4.38 5.65 30.67 0.17 -4.21 16 13 C 0.14 6.31 6.52 86.36 0.56 6.87 16 14 N -0.61 -30.72 2.99 -699.09 -2.09 -32.81 16 15 C -0.26 -14.23 9.59 84.04 0.81 -13.43 16 16 H 0.07 3.54 7.85 -2.91 -0.02 3.52 16 17 C -0.05 -2.73 5.07 84.86 0.43 -2.30 16 18 N -0.94 -54.99 11.00 21.65 0.24 -54.75 16 19 Si 0.97 44.22 29.57 68.60 2.03 46.25 16 20 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 21 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 22 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 23 C 0.18 8.58 5.25 86.36 0.45 9.04 16 24 C -0.13 -4.52 5.55 30.67 0.17 -4.35 16 25 C 0.10 1.89 6.04 86.36 0.52 2.41 16 26 C 0.08 1.31 3.93 30.69 0.12 1.43 16 27 H 0.14 1.67 8.14 -2.39 -0.02 1.65 16 28 C -0.18 -3.27 8.81 71.98 0.63 -2.64 16 29 O -0.37 -6.95 10.19 -144.45 -1.47 -8.42 16 30 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.10 1.18 5.78 -2.38 -0.01 1.17 16 36 H 0.10 1.13 8.13 -2.39 -0.02 1.11 16 37 H 0.41 8.17 6.16 -92.71 -0.57 7.60 16 38 H 0.06 2.24 7.51 -2.38 -0.02 2.22 16 39 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 41 H 0.06 2.47 7.93 -2.39 -0.02 2.45 16 42 H 0.01 0.28 8.14 -2.38 -0.02 0.27 16 43 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 44 H 0.07 3.55 6.07 -2.39 -0.01 3.54 16 45 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 46 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 47 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 48 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 49 H 0.09 2.03 7.06 -2.39 -0.02 2.01 16 50 H 0.04 0.95 6.11 -2.39 -0.01 0.94 16 51 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 52 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -72.83 400.24 0.73 -72.10 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: 0.33 Total: 20.69 kcal Atomic # 6 Polarization: 19.48 SS G_CDS: 7.70 Total: 27.18 kcal Atomic # 7 Polarization: -118.71 SS G_CDS: -6.26 Total: -124.97 kcal Atomic # 8 Polarization: -38.17 SS G_CDS: -3.07 Total: -41.25 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -72.83 0.73 -72.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615193935.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.011 kcal (2) G-P(sol) polarization free energy of solvation -72.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds