Wall clock time and date at job start Wed Apr 1 2020 01:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.51988 * 2 1 4 4 C 1.53240 * 109.49364 * 239.93518 * 2 1 3 5 5 N 1.47086 * 108.52082 * 186.20682 * 4 2 1 6 6 C 1.34768 * 120.87927 * 231.16040 * 5 4 2 7 7 O 1.21512 * 120.00267 * 0.02712 * 6 5 4 8 8 O 1.34641 * 119.99654 * 180.02562 * 6 5 4 9 9 C 1.45208 * 116.99920 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47011 * 59.99616 * 9 8 6 11 11 C 1.52997 * 109.47011 * 179.97438 * 9 8 6 12 12 C 1.52995 * 109.46954 * 299.99927 * 9 8 6 13 13 C 1.47080 * 118.23414 * 51.19120 * 5 4 2 14 14 C 1.53242 * 108.51753 * 308.80807 * 13 5 4 15 15 N 1.46893 * 109.33918 * 53.83548 * 14 13 5 16 16 C 1.46910 * 110.99801 * 172.74308 * 15 14 13 17 17 C 1.50700 * 109.46812 * 66.04906 * 16 15 14 18 18 O 1.21286 * 120.00120 * 359.97438 * 17 16 15 19 19 N 1.34780 * 120.00000 * 179.97438 * 17 16 15 20 20 C 1.46491 * 120.00091 * 179.97438 * 19 17 16 21 21 C 1.50702 * 109.46957 * 179.97438 * 20 19 17 22 22 H 1.08002 * 120.00299 * 0.02562 * 21 20 19 23 23 C 1.37884 * 119.99942 * 179.72213 * 21 20 19 24 24 N 1.31514 * 119.99985 * 180.27663 * 23 21 20 25 25 Si 1.86800 * 119.99777 * 0.28166 * 23 21 20 26 26 H 1.48498 * 109.47109 * 89.99834 * 25 23 21 27 27 H 1.48507 * 109.46754 * 209.99574 * 25 23 21 28 28 H 1.48498 * 109.47278 * 329.99405 * 25 23 21 29 29 H 1.09002 * 109.46868 * 299.92863 * 1 2 3 30 30 H 1.08998 * 109.46920 * 59.92988 * 1 2 3 31 31 H 1.09001 * 109.47037 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.62623 * 66.50049 * 4 2 1 33 33 H 1.08998 * 109.78739 * 306.01269 * 4 2 1 34 34 H 1.09004 * 109.47375 * 60.00266 * 10 9 8 35 35 H 1.09005 * 109.46842 * 179.97438 * 10 9 8 36 36 H 1.08994 * 109.47308 * 300.00263 * 10 9 8 37 37 H 1.09002 * 109.47104 * 60.00253 * 11 9 8 38 38 H 1.08996 * 109.47224 * 179.97438 * 11 9 8 39 39 H 1.08996 * 109.47283 * 300.00274 * 11 9 8 40 40 H 1.09002 * 109.47774 * 59.99903 * 12 9 8 41 41 H 1.08996 * 109.47065 * 180.02562 * 12 9 8 42 42 H 1.09002 * 109.47224 * 299.99786 * 12 9 8 43 43 H 1.09004 * 109.62624 * 189.10140 * 13 5 4 44 44 H 1.08996 * 109.79207 * 68.61454 * 13 5 4 45 45 H 1.09003 * 109.49181 * 293.87028 * 14 13 5 46 46 H 1.09002 * 109.49029 * 173.79580 * 14 13 5 47 47 H 1.08998 * 109.47017 * 306.04968 * 16 15 14 48 48 H 1.09002 * 109.46670 * 186.04379 * 16 15 14 49 49 H 0.97003 * 119.99349 * 359.97438 * 19 17 16 50 50 H 1.09004 * 109.47166 * 60.00164 * 20 19 17 51 51 H 1.08994 * 109.47507 * 299.99870 * 20 19 17 52 52 H 0.96996 * 119.99730 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0413 -0.7237 -1.2502 5 7 3.5043 -0.8431 -1.1554 6 6 4.2976 -0.4493 -2.1712 7 8 3.8063 0.0120 -3.1823 8 8 5.6347 -0.5671 -2.0656 9 6 6.4271 -0.1225 -3.1983 10 6 6.1640 1.3631 -3.4529 11 6 7.9121 -0.3324 -2.8956 12 6 6.0401 -0.9290 -4.4394 13 6 4.0782 -1.4041 0.0771 14 6 3.4866 -0.6536 1.2750 15 7 2.0203 -0.6938 1.1984 16 6 1.4140 -0.1359 2.4147 17 6 1.7282 1.3353 2.5031 18 8 2.3921 1.8667 1.6383 19 7 1.2714 2.0606 3.5432 20 6 1.5772 3.4907 3.6294 21 6 0.9542 4.0633 4.8765 22 1 0.3874 3.4256 5.5388 23 6 1.1129 5.4000 5.1751 24 7 0.5738 5.8985 6.2662 25 14 2.0936 6.5028 4.0299 26 1 1.1860 7.0929 3.0135 27 1 2.7309 7.5901 4.8154 28 1 3.1437 5.7021 3.3506 29 1 -0.3633 0.5127 0.8907 30 1 -0.3633 0.5149 -0.8893 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7776 -0.1502 -2.1388 33 1 1.5960 -1.7168 -1.3098 34 1 6.4398 1.9378 -2.5687 35 1 6.7592 1.6969 -4.3029 36 1 5.1062 1.5130 -3.6683 37 1 8.0998 -1.3907 -2.7139 38 1 8.5069 0.0009 -3.7459 39 1 8.1875 0.2424 -2.0114 40 1 4.9822 -0.7791 -4.6550 41 1 6.6352 -0.5956 -5.2895 42 1 6.2275 -1.9874 -4.2580 43 1 5.1611 -1.2805 0.0660 44 1 3.8313 -2.4632 0.1503 45 1 3.8236 0.3829 1.2573 46 1 3.8157 -1.1276 2.1997 47 1 1.8175 -0.6468 3.2889 48 1 0.3335 -0.2752 2.3788 49 1 0.7401 1.6356 4.2346 50 1 1.1745 4.0018 2.7549 51 1 2.6576 3.6296 3.6659 52 1 0.6852 6.8389 6.4761 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731669645.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:33:10 Heat of formation + Delta-G solvation = -101.765221 kcal Electronic energy + Delta-G solvation = -31734.032026 eV Core-core repulsion = 27541.230985 eV Total energy + Delta-G solvation = -4192.801041 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.04099 -40.09423 -38.27087 -36.81776 -35.00465 -34.32389 -33.85831 -32.58540 -32.42765 -29.61591 -27.92914 -27.62596 -27.55126 -27.15001 -25.12945 -22.96919 -22.38069 -21.81365 -20.36744 -19.89085 -19.30837 -18.00877 -17.25185 -16.88558 -16.31523 -16.02146 -15.97855 -15.67652 -15.38911 -14.97162 -14.69633 -14.52715 -14.45864 -14.24010 -13.89726 -13.64495 -13.40425 -13.01934 -12.74642 -12.61755 -12.39582 -12.35331 -12.28634 -12.20247 -12.09167 -11.99875 -11.89306 -11.77502 -11.58747 -11.45573 -11.20248 -11.06162 -10.97544 -10.88542 -10.64718 -10.50925 -10.06998 -10.06043 -9.96576 -9.54733 -8.88498 -8.83078 -8.23540 -7.96090 -6.26690 -4.29312 2.02730 2.77985 3.05961 3.22355 3.29227 3.36948 3.66158 3.83269 3.93100 4.28365 4.51372 4.55831 4.69964 4.74756 4.83273 4.94089 5.08572 5.16815 5.21016 5.24043 5.24885 5.32972 5.38492 5.42824 5.43656 5.46428 5.52026 5.55892 5.59879 5.63456 5.66729 5.69569 5.76950 5.83189 6.04047 6.07491 6.10065 6.15054 6.29669 6.33310 6.39685 6.71179 6.85728 6.98059 7.00261 7.15128 7.31032 7.33027 8.05069 8.26585 8.43089 8.68114 8.82703 9.33266 10.85196 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013049 B = 0.002803 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.261859 B = 9986.324777 C =11217.992902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.042 3.958 3 H 0.094 0.906 4 C 0.142 3.858 5 N -0.593 5.593 6 C 0.655 3.345 7 O -0.572 6.572 8 O -0.363 6.363 9 C 0.136 3.864 10 C -0.184 4.184 11 C -0.140 4.140 12 C -0.182 4.182 13 C 0.121 3.879 14 C 0.025 3.975 15 N -0.509 5.509 16 C 0.029 3.971 17 C 0.467 3.533 18 O -0.556 6.556 19 N -0.702 5.702 20 C 0.220 3.780 21 C -0.545 4.545 22 H 0.080 0.920 23 C 0.078 3.922 24 N -0.891 5.891 25 Si 0.877 3.123 26 H -0.273 1.273 27 H -0.283 1.283 28 H -0.262 1.262 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.095 0.905 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.065 0.935 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.087 0.913 41 H 0.068 0.932 42 H 0.058 0.942 43 H 0.092 0.908 44 H 0.074 0.926 45 H 0.070 0.930 46 H 0.084 0.916 47 H 0.102 0.898 48 H 0.108 0.892 49 H 0.397 0.603 50 H 0.019 0.981 51 H 0.023 0.977 52 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.556 -18.172 -16.165 25.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.066 4.066 3 H 0.112 0.888 4 C 0.021 3.979 5 N -0.333 5.333 6 C 0.410 3.590 7 O -0.462 6.462 8 O -0.278 6.278 9 C 0.099 3.901 10 C -0.241 4.241 11 C -0.197 4.197 12 C -0.239 4.239 13 C -0.002 4.002 14 C -0.104 4.104 15 N -0.232 5.232 16 C -0.102 4.102 17 C 0.251 3.749 18 O -0.437 6.437 19 N -0.350 5.350 20 C 0.098 3.902 21 C -0.583 4.583 22 H 0.098 0.902 23 C -0.126 4.126 24 N -0.528 5.528 25 Si 0.703 3.297 26 H -0.198 1.198 27 H -0.208 1.208 28 H -0.187 1.187 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.114 0.886 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.106 0.894 37 H 0.084 0.916 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.106 0.894 41 H 0.087 0.913 42 H 0.077 0.923 43 H 0.110 0.890 44 H 0.092 0.908 45 H 0.088 0.912 46 H 0.102 0.898 47 H 0.120 0.880 48 H 0.126 0.874 49 H 0.231 0.769 50 H 0.037 0.963 51 H 0.041 0.959 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.802 -17.943 -17.055 26.274 hybrid contribution 0.429 1.426 0.104 1.493 sum 9.231 -16.517 -16.952 25.404 Atomic orbital electron populations 1.21836 0.93724 1.02245 1.02475 1.22417 0.95621 0.99540 0.89054 0.88833 1.21780 0.76276 1.01204 0.98684 1.46959 1.06320 1.64568 1.15422 1.17924 0.80816 0.77207 0.83007 1.90871 1.75280 1.50155 1.29905 1.86286 1.16961 1.79270 1.45266 1.22049 0.89762 0.94638 0.83655 1.22518 1.05191 0.94099 1.02328 1.21853 0.91829 1.03078 1.02983 1.22502 1.04918 0.99718 0.96748 1.21789 0.98450 0.97555 0.82394 1.22663 0.87970 1.01778 0.97945 1.62444 1.06604 1.52816 1.01342 1.22363 1.02473 0.90741 0.94672 1.21866 0.80485 0.90108 0.82394 1.90563 1.40473 1.73207 1.39417 1.46346 1.52733 1.11900 1.24043 1.19474 0.96437 0.76789 0.97523 1.21087 1.35024 0.95514 1.06646 0.90227 1.24800 0.94946 0.97762 0.95074 1.69876 1.43958 1.14365 1.24619 0.86821 0.81155 0.80670 0.81039 1.19845 1.20836 1.18666 0.92045 0.91895 0.91809 0.88637 0.90833 0.92056 0.91265 0.89353 0.91551 0.90225 0.91392 0.89388 0.91265 0.92309 0.89015 0.90776 0.91184 0.89816 0.87973 0.87443 0.76941 0.96291 0.95865 0.92213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 8.71 37.16 0.32 -1.30 16 2 C 0.04 0.56 2.09 -67.59 -0.14 0.42 16 3 H 0.09 1.63 5.42 -51.93 -0.28 1.35 16 4 C 0.14 1.74 5.88 -3.60 -0.02 1.72 16 5 N -0.59 -7.70 3.01 -178.25 -0.54 -8.24 16 6 C 0.66 9.36 7.75 54.05 0.42 9.78 16 7 O -0.57 -9.12 11.33 -19.28 -0.22 -9.33 16 8 O -0.36 -4.65 8.57 -40.33 -0.35 -4.99 16 9 C 0.14 1.43 1.13 -90.62 -0.10 1.33 16 10 C -0.18 -2.05 8.37 37.16 0.31 -1.74 16 11 C -0.14 -1.09 8.85 37.16 0.33 -0.76 16 12 C -0.18 -1.77 8.37 37.16 0.31 -1.46 16 13 C 0.12 1.33 6.61 -3.60 -0.02 1.31 16 14 C 0.03 0.31 5.22 -3.70 -0.02 0.29 16 15 N -0.51 -6.24 4.68 -227.78 -1.06 -7.30 16 16 C 0.03 0.36 5.30 -4.97 -0.03 0.33 16 17 C 0.47 8.08 7.01 -10.98 -0.08 8.00 16 18 O -0.56 -11.53 11.65 5.55 0.06 -11.47 16 19 N -0.70 -13.37 5.55 -61.48 -0.34 -13.71 16 20 C 0.22 5.28 4.50 -5.20 -0.02 5.26 16 21 C -0.54 -14.69 9.83 -34.44 -0.34 -15.03 16 22 H 0.08 2.23 7.84 -52.49 -0.41 1.81 16 23 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 24 N -0.89 -26.22 13.96 55.43 0.77 -25.45 16 25 Si 0.88 21.39 27.47 -169.99 -4.67 16.72 16 26 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 27 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 28 H -0.26 -6.39 6.54 56.52 0.37 -6.02 16 29 H 0.06 0.74 6.17 -51.93 -0.32 0.42 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.10 1.25 7.06 -51.93 -0.37 0.88 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.09 1.21 5.88 -51.93 -0.31 0.90 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.09 1.07 5.88 -51.93 -0.31 0.76 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.09 0.96 6.99 -51.93 -0.36 0.60 16 44 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.07 1.13 6.04 -51.93 -0.31 0.81 16 46 H 0.08 0.88 8.04 -51.93 -0.42 0.46 16 47 H 0.10 1.05 8.05 -51.93 -0.42 0.64 16 48 H 0.11 1.14 6.31 -51.93 -0.33 0.81 16 49 H 0.40 6.60 8.32 -40.82 -0.34 6.26 16 50 H 0.02 0.48 7.58 -51.93 -0.39 0.09 16 51 H 0.02 0.60 7.19 -51.93 -0.37 0.22 16 52 H 0.27 7.38 8.31 -40.82 -0.34 7.05 16 LS Contribution 396.70 15.07 5.98 5.98 Total: -1.00 -32.79 396.70 -8.29 -41.08 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -8.75 Total: 6.47 kcal Atomic # 6 Polarization: 9.42 SS G_CDS: 0.82 Total: 10.25 kcal Atomic # 7 Polarization: -53.53 SS G_CDS: -1.17 Total: -54.70 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -0.50 Total: -25.79 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.79 -8.29 -41.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731669645.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.689 kcal (2) G-P(sol) polarization free energy of solvation -32.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds