Wall clock time and date at job start Wed Apr 1 2020 01:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.51988 * 2 1 4 4 C 1.53240 * 109.49364 * 239.93518 * 2 1 3 5 5 N 1.47086 * 108.52082 * 186.20682 * 4 2 1 6 6 C 1.34768 * 120.87927 * 231.16040 * 5 4 2 7 7 O 1.21512 * 120.00267 * 0.02712 * 6 5 4 8 8 O 1.34641 * 119.99654 * 180.02562 * 6 5 4 9 9 C 1.45208 * 116.99920 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47011 * 59.99616 * 9 8 6 11 11 C 1.52997 * 109.47011 * 179.97438 * 9 8 6 12 12 C 1.52995 * 109.46954 * 299.99927 * 9 8 6 13 13 C 1.47080 * 118.23414 * 51.19120 * 5 4 2 14 14 C 1.53242 * 108.51753 * 308.80807 * 13 5 4 15 15 N 1.46893 * 109.33918 * 53.83548 * 14 13 5 16 16 C 1.46910 * 110.99801 * 172.74308 * 15 14 13 17 17 C 1.50700 * 109.46812 * 66.04906 * 16 15 14 18 18 O 1.21286 * 120.00120 * 359.97438 * 17 16 15 19 19 N 1.34780 * 120.00000 * 179.97438 * 17 16 15 20 20 C 1.46491 * 120.00091 * 179.97438 * 19 17 16 21 21 C 1.50702 * 109.46957 * 179.97438 * 20 19 17 22 22 H 1.08002 * 120.00299 * 0.02562 * 21 20 19 23 23 C 1.37884 * 119.99942 * 179.72213 * 21 20 19 24 24 N 1.31514 * 119.99985 * 180.27663 * 23 21 20 25 25 Si 1.86800 * 119.99777 * 0.28166 * 23 21 20 26 26 H 1.48498 * 109.47109 * 89.99834 * 25 23 21 27 27 H 1.48507 * 109.46754 * 209.99574 * 25 23 21 28 28 H 1.48498 * 109.47278 * 329.99405 * 25 23 21 29 29 H 1.09002 * 109.46868 * 299.92863 * 1 2 3 30 30 H 1.08998 * 109.46920 * 59.92988 * 1 2 3 31 31 H 1.09001 * 109.47037 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.62623 * 66.50049 * 4 2 1 33 33 H 1.08998 * 109.78739 * 306.01269 * 4 2 1 34 34 H 1.09004 * 109.47375 * 60.00266 * 10 9 8 35 35 H 1.09005 * 109.46842 * 179.97438 * 10 9 8 36 36 H 1.08994 * 109.47308 * 300.00263 * 10 9 8 37 37 H 1.09002 * 109.47104 * 60.00253 * 11 9 8 38 38 H 1.08996 * 109.47224 * 179.97438 * 11 9 8 39 39 H 1.08996 * 109.47283 * 300.00274 * 11 9 8 40 40 H 1.09002 * 109.47774 * 59.99903 * 12 9 8 41 41 H 1.08996 * 109.47065 * 180.02562 * 12 9 8 42 42 H 1.09002 * 109.47224 * 299.99786 * 12 9 8 43 43 H 1.09004 * 109.62624 * 189.10140 * 13 5 4 44 44 H 1.08996 * 109.79207 * 68.61454 * 13 5 4 45 45 H 1.09003 * 109.49181 * 293.87028 * 14 13 5 46 46 H 1.09002 * 109.49029 * 173.79580 * 14 13 5 47 47 H 1.08998 * 109.47017 * 306.04968 * 16 15 14 48 48 H 1.09002 * 109.46670 * 186.04379 * 16 15 14 49 49 H 0.97003 * 119.99349 * 359.97438 * 19 17 16 50 50 H 1.09004 * 109.47166 * 60.00164 * 20 19 17 51 51 H 1.08994 * 109.47507 * 299.99870 * 20 19 17 52 52 H 0.96996 * 119.99730 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0413 -0.7237 -1.2502 5 7 3.5043 -0.8431 -1.1554 6 6 4.2976 -0.4493 -2.1712 7 8 3.8063 0.0120 -3.1823 8 8 5.6347 -0.5671 -2.0656 9 6 6.4271 -0.1225 -3.1983 10 6 6.1640 1.3631 -3.4529 11 6 7.9121 -0.3324 -2.8956 12 6 6.0401 -0.9290 -4.4394 13 6 4.0782 -1.4041 0.0771 14 6 3.4866 -0.6536 1.2750 15 7 2.0203 -0.6938 1.1984 16 6 1.4140 -0.1359 2.4147 17 6 1.7282 1.3353 2.5031 18 8 2.3921 1.8667 1.6383 19 7 1.2714 2.0606 3.5432 20 6 1.5772 3.4907 3.6294 21 6 0.9542 4.0633 4.8765 22 1 0.3874 3.4256 5.5388 23 6 1.1129 5.4000 5.1751 24 7 0.5738 5.8985 6.2662 25 14 2.0936 6.5028 4.0299 26 1 1.1860 7.0929 3.0135 27 1 2.7309 7.5901 4.8154 28 1 3.1437 5.7021 3.3506 29 1 -0.3633 0.5127 0.8907 30 1 -0.3633 0.5149 -0.8893 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7776 -0.1502 -2.1388 33 1 1.5960 -1.7168 -1.3098 34 1 6.4398 1.9378 -2.5687 35 1 6.7592 1.6969 -4.3029 36 1 5.1062 1.5130 -3.6683 37 1 8.0998 -1.3907 -2.7139 38 1 8.5069 0.0009 -3.7459 39 1 8.1875 0.2424 -2.0114 40 1 4.9822 -0.7791 -4.6550 41 1 6.6352 -0.5956 -5.2895 42 1 6.2275 -1.9874 -4.2580 43 1 5.1611 -1.2805 0.0660 44 1 3.8313 -2.4632 0.1503 45 1 3.8236 0.3829 1.2573 46 1 3.8157 -1.1276 2.1997 47 1 1.8175 -0.6468 3.2889 48 1 0.3335 -0.2752 2.3788 49 1 0.7401 1.6356 4.2346 50 1 1.1745 4.0018 2.7549 51 1 2.6576 3.6296 3.6659 52 1 0.6852 6.8389 6.4761 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731669645.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:33:09 Heat of formation + Delta-G solvation = -126.281094 kcal Electronic energy + Delta-G solvation = -31735.095114 eV Core-core repulsion = 27541.230985 eV Total energy + Delta-G solvation = -4193.864129 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.06798 -41.30006 -39.44157 -37.89081 -36.31233 -35.80074 -34.77692 -34.44851 -33.54899 -30.98941 -29.45104 -28.39773 -28.33151 -28.14159 -26.33725 -24.07911 -23.89422 -22.97961 -21.67764 -21.14129 -20.31367 -19.20429 -18.88920 -17.85976 -17.68847 -17.24065 -17.18165 -16.97767 -16.45383 -16.25797 -16.00215 -15.81963 -15.54882 -15.37978 -15.09258 -14.76067 -14.60832 -14.45332 -14.33214 -13.83495 -13.55167 -13.31362 -13.16217 -13.12055 -13.06662 -12.93637 -12.88910 -12.82408 -12.78712 -12.69640 -12.49692 -12.33502 -12.09115 -12.02764 -11.98687 -11.75560 -11.69327 -11.41582 -11.37371 -11.07602 -10.95512 -9.92029 -9.89816 -9.15351 -8.43845 -6.50208 1.08643 1.26747 1.29812 1.41144 1.68561 1.71296 2.22844 2.49649 2.72575 2.85553 2.91484 3.72563 3.76539 3.78520 3.87254 3.92713 3.95248 4.00195 4.27423 4.29767 4.40632 4.47416 4.50308 4.58160 4.59724 4.61737 4.68780 4.73529 4.73919 4.76393 4.78403 4.82762 4.85618 4.89437 4.98159 5.06125 5.08511 5.12518 5.23288 5.25032 5.27015 5.32068 5.39427 5.44668 5.56022 5.81381 5.94368 6.06386 6.29172 6.51591 6.83138 7.12798 7.22411 7.41313 8.70792 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013049 B = 0.002803 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.261859 B = 9986.324777 C =11217.992902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.046 3.954 3 H 0.047 0.953 4 C 0.145 3.855 5 N -0.597 5.597 6 C 0.647 3.353 7 O -0.596 6.596 8 O -0.367 6.367 9 C 0.123 3.877 10 C -0.181 4.181 11 C -0.134 4.134 12 C -0.175 4.175 13 C 0.124 3.876 14 C 0.026 3.974 15 N -0.493 5.493 16 C 0.038 3.962 17 C 0.466 3.534 18 O -0.590 6.590 19 N -0.704 5.704 20 C 0.234 3.766 21 C -0.545 4.545 22 H 0.062 0.938 23 C 0.028 3.972 24 N -0.929 5.929 25 Si 0.934 3.066 26 H -0.267 1.267 27 H -0.272 1.272 28 H -0.266 1.266 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.099 0.901 34 H 0.050 0.950 35 H 0.093 0.907 36 H 0.057 0.943 37 H 0.075 0.925 38 H 0.103 0.897 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.091 0.909 42 H 0.066 0.934 43 H 0.095 0.905 44 H 0.101 0.899 45 H 0.028 0.972 46 H 0.109 0.891 47 H 0.134 0.866 48 H 0.133 0.867 49 H 0.410 0.590 50 H 0.004 0.996 51 H 0.006 0.994 52 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.404 -20.499 -16.854 28.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.063 4.063 3 H 0.065 0.935 4 C 0.024 3.976 5 N -0.337 5.337 6 C 0.403 3.597 7 O -0.488 6.488 8 O -0.282 6.282 9 C 0.087 3.913 10 C -0.238 4.238 11 C -0.191 4.191 12 C -0.232 4.232 13 C 0.002 3.998 14 C -0.103 4.103 15 N -0.215 5.215 16 C -0.093 4.093 17 C 0.253 3.747 18 O -0.472 6.472 19 N -0.354 5.354 20 C 0.110 3.890 21 C -0.583 4.583 22 H 0.081 0.919 23 C -0.172 4.172 24 N -0.568 5.568 25 Si 0.759 3.241 26 H -0.192 1.192 27 H -0.197 1.197 28 H -0.190 1.190 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.108 0.892 32 H 0.098 0.902 33 H 0.117 0.883 34 H 0.069 0.931 35 H 0.112 0.888 36 H 0.076 0.924 37 H 0.094 0.906 38 H 0.121 0.879 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.110 0.890 42 H 0.085 0.915 43 H 0.113 0.887 44 H 0.119 0.881 45 H 0.046 0.954 46 H 0.127 0.873 47 H 0.152 0.848 48 H 0.151 0.849 49 H 0.245 0.755 50 H 0.022 0.978 51 H 0.024 0.976 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.648 -20.309 -17.732 28.635 hybrid contribution 0.173 2.120 0.300 2.148 sum 9.821 -18.189 -17.432 27.041 Atomic orbital electron populations 1.21811 0.92021 1.03772 1.02170 1.22293 0.96955 0.97129 0.89970 0.93524 1.21774 0.76211 1.02081 0.97550 1.47156 1.06580 1.64233 1.15764 1.18162 0.81380 0.77114 0.83088 1.90859 1.75800 1.51164 1.30985 1.86293 1.16263 1.79202 1.46393 1.22424 0.91109 0.94102 0.83633 1.22482 1.03573 0.94944 1.02849 1.21873 0.89642 1.03768 1.03840 1.22432 1.03490 1.00166 0.97134 1.21903 0.98556 0.98500 0.80830 1.22685 0.87969 0.99763 0.99835 1.62544 1.06565 1.51463 1.00966 1.22567 1.04266 0.86591 0.95851 1.22897 0.79000 0.92020 0.80789 1.90592 1.41731 1.74452 1.40453 1.46205 1.53714 1.10055 1.25452 1.18994 0.94844 0.79771 0.95379 1.21306 1.34316 0.95471 1.07165 0.91939 1.25557 0.95974 0.99323 0.96370 1.69970 1.45528 1.15038 1.26221 0.85910 0.79799 0.79084 0.79341 1.19228 1.19658 1.19048 0.92858 0.91814 0.89212 0.90160 0.88297 0.93057 0.88792 0.92390 0.90606 0.87868 0.91813 0.92124 0.89042 0.91476 0.88696 0.88110 0.95387 0.87297 0.84840 0.84911 0.75458 0.97774 0.97575 0.91833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 8.71 71.98 0.63 -2.27 16 2 C 0.05 1.17 2.09 44.99 0.09 1.27 16 3 H 0.05 1.69 5.42 -2.39 -0.01 1.67 16 4 C 0.15 3.45 5.88 86.35 0.51 3.96 16 5 N -0.60 -15.23 3.01 -948.27 -2.85 -18.08 16 6 C 0.65 18.74 7.75 129.79 1.01 19.75 16 7 O -0.60 -19.77 11.33 19.80 0.22 -19.55 16 8 O -0.37 -9.32 8.57 -55.51 -0.48 -9.79 16 9 C 0.12 2.52 1.13 -10.80 -0.01 2.50 16 10 C -0.18 -4.07 8.37 71.98 0.60 -3.47 16 11 C -0.13 -1.81 8.85 71.98 0.64 -1.17 16 12 C -0.18 -3.23 8.37 71.98 0.60 -2.63 16 13 C 0.12 2.51 6.61 86.35 0.57 3.08 16 14 C 0.03 0.60 5.22 86.39 0.45 1.06 16 15 N -0.49 -10.99 4.68 -874.55 -4.09 -15.08 16 16 C 0.04 0.84 5.30 85.56 0.45 1.29 16 17 C 0.47 15.85 7.01 87.66 0.61 16.46 16 18 O -0.59 -25.03 11.65 -3.05 -0.04 -25.07 16 19 N -0.70 -26.60 5.55 -466.80 -2.59 -29.19 16 20 C 0.23 11.39 4.50 85.64 0.38 11.78 16 21 C -0.54 -29.76 9.83 25.60 0.25 -29.51 16 22 H 0.06 3.55 7.84 -2.91 -0.02 3.53 16 23 C 0.03 1.60 5.47 84.66 0.46 2.06 16 24 N -0.93 -55.22 13.96 21.45 0.30 -54.92 16 25 Si 0.93 44.58 27.47 68.60 1.88 46.47 16 26 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 27 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 28 H -0.27 -12.74 6.54 99.48 0.65 -12.09 16 29 H 0.05 1.19 6.17 -2.39 -0.01 1.17 16 30 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.08 2.15 7.06 -2.39 -0.02 2.13 16 33 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 35 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 36 H 0.06 1.67 5.88 -2.39 -0.01 1.66 16 37 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.06 1.48 5.88 -2.39 -0.01 1.47 16 41 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.09 1.86 6.99 -2.39 -0.02 1.84 16 44 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.03 0.91 6.04 -2.39 -0.01 0.89 16 46 H 0.11 1.96 8.04 -2.39 -0.02 1.94 16 47 H 0.13 2.20 8.05 -2.39 -0.02 2.18 16 48 H 0.13 2.34 6.31 -2.39 -0.02 2.33 16 49 H 0.41 13.24 8.32 -92.71 -0.77 12.47 16 50 H 0.00 0.22 7.58 -2.38 -0.02 0.21 16 51 H 0.01 0.33 7.19 -2.39 -0.02 0.31 16 52 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -74.36 396.70 -0.29 -74.65 By element: Atomic # 1 Polarization: 26.31 SS G_CDS: 0.09 Total: 26.40 kcal Atomic # 6 Polarization: 16.91 SS G_CDS: 7.25 Total: 24.16 kcal Atomic # 7 Polarization: -108.04 SS G_CDS: -9.23 Total: -117.27 kcal Atomic # 8 Polarization: -54.12 SS G_CDS: -0.29 Total: -54.41 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.88 Total: 46.47 kcal Total: -74.36 -0.29 -74.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731669645.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.632 kcal (2) G-P(sol) polarization free energy of solvation -74.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds