Wall clock time and date at job start Wed Apr 1 2020 01:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.49225 * 2 1 4 4 C 1.53231 * 109.51571 * 120.06231 * 2 1 3 5 5 N 1.47080 * 108.52219 * 173.80602 * 4 2 1 6 6 C 1.34777 * 120.88156 * 128.79478 * 5 4 2 7 7 O 1.21516 * 120.00148 * 0.02562 * 6 5 4 8 8 O 1.34639 * 119.99772 * 179.97438 * 6 5 4 9 9 C 1.45204 * 116.99831 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47087 * 59.99783 * 9 8 6 11 11 C 1.53003 * 109.47096 * 180.02562 * 9 8 6 12 12 C 1.53003 * 109.46943 * 300.00194 * 9 8 6 13 13 C 1.47082 * 118.23721 * 308.81587 * 5 4 2 14 14 C 1.53240 * 108.51994 * 51.18387 * 13 5 4 15 15 N 1.46893 * 109.49534 * 239.94751 * 2 1 3 16 16 C 1.46901 * 111.00489 * 52.75659 * 15 2 1 17 17 C 1.50701 * 109.47102 * 64.72255 * 16 15 2 18 18 O 1.21290 * 119.99769 * 354.31006 * 17 16 15 19 19 N 1.34777 * 120.00216 * 174.31248 * 17 16 15 20 20 C 1.46493 * 120.00167 * 180.02562 * 19 17 16 21 21 C 1.50696 * 109.47410 * 179.97438 * 20 19 17 22 22 H 1.08003 * 119.99585 * 359.97438 * 21 20 19 23 23 C 1.37875 * 120.00275 * 180.02562 * 21 20 19 24 24 N 1.31518 * 119.99821 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 120.00143 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47253 * 89.99959 * 25 23 21 27 27 H 1.48499 * 109.47361 * 209.99563 * 25 23 21 28 28 H 1.48496 * 109.47213 * 329.99816 * 25 23 21 29 29 H 1.09005 * 109.46688 * 173.18955 * 1 2 3 30 30 H 1.08994 * 109.47309 * 293.19182 * 1 2 3 31 31 H 1.09007 * 109.47242 * 53.19672 * 1 2 3 32 32 H 1.09005 * 109.63160 * 293.51723 * 4 2 1 33 33 H 1.09005 * 109.62873 * 53.90346 * 4 2 1 34 34 H 1.09007 * 109.46550 * 60.00448 * 10 9 8 35 35 H 1.09003 * 109.46956 * 180.02562 * 10 9 8 36 36 H 1.08990 * 109.47433 * 300.00434 * 10 9 8 37 37 H 1.09000 * 109.47084 * 60.00016 * 11 9 8 38 38 H 1.08995 * 109.46777 * 179.97438 * 11 9 8 39 39 H 1.08998 * 109.46657 * 299.99877 * 11 9 8 40 40 H 1.08999 * 109.47438 * 60.00349 * 12 9 8 41 41 H 1.09003 * 109.47106 * 180.02562 * 12 9 8 42 42 H 1.09000 * 109.47272 * 300.00006 * 12 9 8 43 43 H 1.09003 * 109.62527 * 170.89242 * 13 5 4 44 44 H 1.08997 * 109.62774 * 291.47806 * 13 5 4 45 45 H 1.08992 * 109.49105 * 186.20609 * 14 13 5 46 46 H 1.09007 * 109.48917 * 66.13071 * 14 13 5 47 47 H 1.09000 * 109.47440 * 184.72204 * 16 15 2 48 48 H 1.09003 * 109.46892 * 304.72628 * 16 15 2 49 49 H 0.97000 * 119.99352 * 359.97438 * 19 17 16 50 50 H 1.09005 * 109.47105 * 300.00103 * 20 19 17 51 51 H 1.09002 * 109.47593 * 59.99085 * 20 19 17 52 52 H 0.96997 * 119.99694 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0419 -0.7235 1.2500 5 7 3.5048 -0.8423 1.1549 6 6 4.2983 -0.4475 2.1702 7 8 3.8070 0.0135 3.1815 8 8 5.6354 -0.5648 2.0643 9 6 6.4279 -0.1201 3.1969 10 6 6.0413 -0.9269 4.4381 11 6 7.9129 -0.3294 2.8939 12 6 6.1644 1.3654 3.4517 13 6 4.0787 -1.4030 -0.0778 14 6 3.4866 -0.6527 -1.2756 15 7 2.0202 -0.6935 -1.1986 16 6 1.4136 -0.1358 -2.4147 17 6 1.8572 1.2941 -2.5871 18 8 2.5203 1.8314 -1.7253 19 7 1.5170 1.9759 -3.6988 20 6 1.9487 3.3657 -3.8666 21 6 1.4414 3.8938 -5.1837 22 1 0.8563 3.2575 -5.8313 23 6 1.7251 5.1887 -5.5626 24 7 2.4381 5.9633 -4.7742 25 14 1.0970 5.8430 -7.1955 26 1 -0.2413 6.4567 -7.0011 27 1 2.0398 6.8662 -7.7146 28 1 0.9929 4.7266 -8.1691 29 1 -0.3633 -1.0205 -0.1219 30 1 -0.3633 0.4047 0.9446 31 1 -0.3634 0.6157 -0.8229 32 1 1.7781 -0.1502 2.1388 33 1 1.5941 -1.7156 1.3080 34 1 6.2291 -1.9851 4.2564 35 1 6.6359 -0.5926 5.2883 36 1 4.9835 -0.7773 4.6537 37 1 8.1879 0.2457 2.0097 38 1 8.5077 0.0049 3.7438 39 1 8.1009 -1.3876 2.7120 40 1 5.1065 1.5150 3.6675 41 1 6.7596 1.6994 4.3016 42 1 6.4397 1.9402 2.5675 43 1 5.1616 -1.2789 -0.0669 44 1 3.8293 -2.4616 -0.1493 45 1 3.8157 -1.1265 -2.2003 46 1 3.8231 0.3840 -1.2578 47 1 1.7285 -0.7206 -3.2789 48 1 0.3276 -0.1713 -2.3281 49 1 0.9869 1.5460 -4.3881 50 1 1.5483 3.9712 -3.0535 51 1 3.0376 3.4123 -3.8519 52 1 2.6373 6.8744 -5.0406 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731669646.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:33:13 Heat of formation + Delta-G solvation = -131.267641 kcal Electronic energy + Delta-G solvation = -31620.050388 eV Core-core repulsion = 27425.970026 eV Total energy + Delta-G solvation = -4194.080362 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.06253 -41.25987 -39.42899 -37.88622 -36.28572 -35.81638 -34.77688 -34.38647 -33.54647 -30.74021 -29.11870 -28.39692 -28.32747 -28.12790 -26.37827 -24.45080 -23.93405 -23.01189 -21.62413 -21.09062 -20.31675 -19.11363 -18.72517 -17.86226 -17.56611 -17.24448 -17.10986 -16.96398 -16.41863 -16.32911 -16.01642 -15.80585 -15.55604 -15.38678 -15.00089 -14.70192 -14.56768 -14.25341 -14.11394 -13.82684 -13.51656 -13.27151 -13.12854 -13.08258 -13.00127 -12.91078 -12.88552 -12.80846 -12.77242 -12.68067 -12.49487 -12.33869 -12.26396 -12.07942 -12.03054 -11.74517 -11.51130 -11.41586 -11.35987 -11.07840 -10.82199 -9.90568 -9.81601 -9.17155 -8.31968 -6.49198 1.08641 1.41049 1.43333 1.54680 1.70889 1.73186 2.30812 2.62023 2.72591 2.85299 3.02875 3.72523 3.76485 3.78473 3.86230 3.92744 3.98602 4.00544 4.26976 4.29021 4.41060 4.46469 4.50688 4.57639 4.59311 4.60990 4.68042 4.73670 4.74803 4.77716 4.82883 4.85645 4.89920 5.05191 5.08340 5.08949 5.12143 5.19998 5.25005 5.26960 5.32265 5.39110 5.44626 5.48667 5.68270 5.80900 5.84431 5.93079 6.28445 6.62992 6.89887 7.21105 7.21918 7.50133 8.79954 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.014396 B = 0.002528 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.478395 B =11074.699789 C =12181.322327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.049 3.951 3 H 0.034 0.966 4 C 0.145 3.855 5 N -0.598 5.598 6 C 0.647 3.353 7 O -0.596 6.596 8 O -0.368 6.368 9 C 0.123 3.877 10 C -0.174 4.174 11 C -0.134 4.134 12 C -0.182 4.182 13 C 0.126 3.874 14 C 0.022 3.978 15 N -0.490 5.490 16 C 0.039 3.961 17 C 0.461 3.539 18 O -0.595 6.595 19 N -0.707 5.707 20 C 0.270 3.730 21 C -0.555 4.555 22 H 0.086 0.914 23 C 0.002 3.998 24 N -0.933 5.933 25 Si 0.985 3.015 26 H -0.271 1.271 27 H -0.285 1.285 28 H -0.253 1.253 29 H 0.093 0.907 30 H 0.067 0.933 31 H 0.050 0.950 32 H 0.081 0.919 33 H 0.103 0.897 34 H 0.067 0.933 35 H 0.091 0.909 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.104 0.896 39 H 0.076 0.924 40 H 0.057 0.943 41 H 0.094 0.906 42 H 0.048 0.952 43 H 0.093 0.907 44 H 0.103 0.897 45 H 0.106 0.894 46 H 0.029 0.971 47 H 0.135 0.865 48 H 0.134 0.866 49 H 0.409 0.591 50 H -0.020 1.020 51 H -0.018 1.018 52 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.313 -20.892 11.586 24.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.060 4.060 3 H 0.052 0.948 4 C 0.024 3.976 5 N -0.338 5.338 6 C 0.403 3.597 7 O -0.488 6.488 8 O -0.282 6.282 9 C 0.087 3.913 10 C -0.231 4.231 11 C -0.191 4.191 12 C -0.239 4.239 13 C 0.003 3.997 14 C -0.107 4.107 15 N -0.213 5.213 16 C -0.092 4.092 17 C 0.248 3.752 18 O -0.477 6.477 19 N -0.357 5.357 20 C 0.146 3.854 21 C -0.592 4.592 22 H 0.104 0.896 23 C -0.198 4.198 24 N -0.572 5.572 25 Si 0.808 3.192 26 H -0.196 1.196 27 H -0.211 1.211 28 H -0.176 1.176 29 H 0.111 0.889 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.121 0.879 34 H 0.086 0.914 35 H 0.110 0.890 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.122 0.878 39 H 0.095 0.905 40 H 0.076 0.924 41 H 0.113 0.887 42 H 0.067 0.933 43 H 0.111 0.889 44 H 0.121 0.879 45 H 0.124 0.876 46 H 0.047 0.953 47 H 0.153 0.847 48 H 0.152 0.848 49 H 0.245 0.755 50 H -0.002 1.002 51 H 0.000 1.000 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.659 -20.700 12.597 24.506 hybrid contribution 0.011 2.133 -0.914 2.321 sum 3.670 -18.567 11.683 22.242 Atomic orbital electron populations 1.21813 0.91642 1.03854 1.02372 1.22205 0.97202 0.96419 0.90174 0.94777 1.21783 0.76169 1.02242 0.97436 1.47163 1.06637 1.64239 1.15744 1.18165 0.81384 0.77091 0.83106 1.90854 1.75802 1.51159 1.30960 1.86294 1.16287 1.79187 1.46457 1.22440 0.91122 0.94080 0.83691 1.22426 1.03510 1.00148 0.97033 1.21876 0.89654 1.03771 1.03818 1.22485 1.03584 0.95006 1.02803 1.21900 0.98470 0.98486 0.80802 1.22721 0.88190 0.99974 0.99767 1.62578 1.06437 1.51271 1.01017 1.22582 1.03350 0.87501 0.95767 1.22956 0.79749 0.91280 0.81225 1.90613 1.41842 1.72169 1.43122 1.46357 1.54001 1.14195 1.21157 1.18436 0.92861 0.78455 0.95630 1.21638 1.35113 0.98712 1.03769 0.89625 1.26102 0.94756 0.96975 1.01945 1.70150 1.39121 1.08503 1.39416 0.85155 0.77908 0.78323 0.77843 1.19614 1.21092 1.17649 0.88855 0.91369 0.93060 0.90073 0.87943 0.91402 0.88974 0.92108 0.91983 0.87775 0.90526 0.92390 0.88682 0.93271 0.88862 0.87909 0.87623 0.95268 0.84722 0.84824 0.75515 1.00168 1.00038 0.92327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.47 71.98 0.61 -2.33 16 2 C 0.05 1.35 2.19 44.99 0.10 1.44 16 3 H 0.03 1.32 5.74 -2.39 -0.01 1.31 16 4 C 0.15 3.64 5.88 86.35 0.51 4.15 16 5 N -0.60 -16.36 3.01 -948.26 -2.85 -19.22 16 6 C 0.65 19.94 7.75 129.79 1.01 20.95 16 7 O -0.60 -20.71 11.33 19.79 0.22 -20.48 16 8 O -0.37 -10.07 8.57 -55.49 -0.48 -10.54 16 9 C 0.12 2.71 1.13 -10.79 -0.01 2.70 16 10 C -0.17 -3.41 8.37 71.98 0.60 -2.81 16 11 C -0.13 -2.03 8.85 71.98 0.64 -1.39 16 12 C -0.18 -4.43 8.37 71.98 0.60 -3.83 16 13 C 0.13 2.81 6.61 86.35 0.57 3.38 16 14 C 0.02 0.58 5.12 86.38 0.44 1.02 16 15 N -0.49 -11.88 4.68 -874.59 -4.09 -15.97 16 16 C 0.04 0.93 5.41 85.56 0.46 1.39 16 17 C 0.46 17.23 7.23 87.66 0.63 17.86 16 18 O -0.59 -28.20 11.67 -3.06 -0.04 -28.24 16 19 N -0.71 -28.65 5.55 -466.79 -2.59 -31.24 16 20 C 0.27 14.74 5.43 85.63 0.46 15.21 16 21 C -0.55 -29.96 9.28 25.60 0.24 -29.72 16 22 H 0.09 4.13 7.60 -2.91 -0.02 4.11 16 23 C 0.00 0.09 5.46 84.65 0.46 0.55 16 24 N -0.93 -56.81 13.29 21.45 0.28 -56.53 16 25 Si 0.98 42.17 29.54 68.60 2.03 44.20 16 26 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 27 H -0.29 -12.17 7.11 99.48 0.71 -11.47 16 28 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 29 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 30 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.05 1.18 6.65 -2.38 -0.02 1.16 16 32 H 0.08 2.27 7.06 -2.38 -0.02 2.25 16 33 H 0.10 2.00 8.14 -2.38 -0.02 1.98 16 34 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 35 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.06 1.55 5.88 -2.39 -0.01 1.54 16 37 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.10 1.06 8.14 -2.39 -0.02 1.05 16 39 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.06 1.78 5.88 -2.39 -0.01 1.77 16 41 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.09 2.06 6.98 -2.39 -0.02 2.04 16 44 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.11 2.24 8.11 -2.39 -0.02 2.22 16 46 H 0.03 1.07 5.73 -2.38 -0.01 1.06 16 47 H 0.14 2.38 8.14 -2.39 -0.02 2.36 16 48 H 0.13 2.55 6.08 -2.39 -0.01 2.53 16 49 H 0.41 13.36 8.32 -92.71 -0.77 12.58 16 50 H -0.02 -1.23 8.14 -2.38 -0.02 -1.25 16 51 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 52 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -78.62 400.83 -0.04 -78.65 By element: Atomic # 1 Polarization: 30.64 SS G_CDS: 0.15 Total: 30.79 kcal Atomic # 6 Polarization: 21.25 SS G_CDS: 7.33 Total: 28.58 kcal Atomic # 7 Polarization: -113.71 SS G_CDS: -9.25 Total: -122.96 kcal Atomic # 8 Polarization: -58.97 SS G_CDS: -0.29 Total: -59.26 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Total: -78.62 -0.04 -78.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731669646.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.615 kcal (2) G-P(sol) polarization free energy of solvation -78.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds