Wall clock time and date at job start Wed Apr 1 2020 01:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.78297 * 2 1 4 4 C 1.52783 * 109.55532 * 239.76971 * 2 1 3 5 5 N 1.46905 * 109.42104 * 186.60890 * 4 2 1 6 6 C 1.46897 * 111.00010 * 187.11167 * 5 4 2 7 7 C 1.50700 * 109.47253 * 301.74685 * 6 5 4 8 8 O 1.21280 * 119.99794 * 359.97438 * 7 6 5 9 9 N 1.34778 * 119.99565 * 179.97438 * 7 6 5 10 10 C 1.46504 * 119.99587 * 179.97438 * 9 7 6 11 11 C 1.50697 * 109.47060 * 180.02562 * 10 9 7 12 12 H 1.08000 * 120.00235 * 359.97438 * 11 10 9 13 13 C 1.37875 * 119.99884 * 180.02562 * 11 10 9 14 14 N 1.31508 * 120.00375 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99744 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47511 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.46963 * 119.99986 * 15 13 11 18 18 H 1.48496 * 109.47358 * 239.99811 * 15 13 11 19 19 C 1.46903 * 111.26843 * 62.96657 * 5 4 2 20 20 C 1.53246 * 109.33633 * 296.89454 * 19 5 4 21 21 N 1.47080 * 108.52438 * 53.83213 * 20 19 5 22 22 C 1.34777 * 120.88506 * 128.81150 * 21 20 19 23 23 O 1.21507 * 119.99909 * 174.37969 * 22 21 20 24 24 O 1.34633 * 119.99804 * 354.38326 * 22 21 20 25 25 C 1.45203 * 116.99980 * 179.97438 * 24 22 21 26 26 C 1.53004 * 109.46941 * 59.99910 * 25 24 22 27 27 C 1.52990 * 109.46985 * 299.99671 * 25 24 22 28 28 C 1.53002 * 109.47120 * 179.97438 * 25 24 22 29 29 H 1.09001 * 109.47315 * 307.88756 * 1 2 3 30 30 H 1.09002 * 109.47008 * 67.88871 * 1 2 3 31 31 H 1.09001 * 109.46860 * 187.88108 * 1 2 3 32 32 H 1.09001 * 109.56921 * 66.55861 * 4 2 1 33 33 H 1.08996 * 109.36199 * 306.53783 * 4 2 1 34 34 H 1.09003 * 109.46895 * 61.74592 * 6 5 4 35 35 H 1.08998 * 109.46686 * 181.74279 * 6 5 4 36 36 H 0.96997 * 120.00317 * 0.02562 * 9 7 6 37 37 H 1.09003 * 109.47293 * 300.00229 * 10 9 7 38 38 H 1.08997 * 109.46887 * 60.00433 * 10 9 7 39 39 H 0.96995 * 120.00572 * 179.97438 * 14 13 11 40 40 H 1.08998 * 109.49295 * 176.93870 * 19 5 4 41 41 H 1.08996 * 109.49320 * 56.85354 * 19 5 4 42 42 H 1.08999 * 109.62927 * 294.12003 * 20 19 5 43 43 H 1.08997 * 109.62716 * 173.53570 * 20 19 5 44 44 H 1.08998 * 109.47049 * 299.99955 * 26 25 24 45 45 H 1.08996 * 109.47099 * 179.97438 * 26 25 24 46 46 H 1.09002 * 109.46872 * 59.99991 * 26 25 24 47 47 H 1.09005 * 109.46979 * 179.97438 * 27 25 24 48 48 H 1.08997 * 109.47434 * 300.00146 * 27 25 24 49 49 H 1.09008 * 109.47036 * 60.00009 * 27 25 24 50 50 H 1.08999 * 109.47106 * 300.00568 * 28 25 24 51 51 H 1.09005 * 109.46491 * 60.00500 * 28 25 24 52 52 H 1.08995 * 109.47055 * 179.97438 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8990 1.0256 0.0000 4 6 2.0414 -0.7249 -1.2439 5 7 3.5018 -0.8624 -1.1633 6 6 4.0496 -1.4024 -2.4148 7 6 3.4185 -2.7401 -2.7036 8 8 2.5940 -3.1987 -1.9415 9 7 3.7705 -3.4267 -3.8087 10 6 3.1574 -4.7274 -4.0891 11 6 3.7193 -5.2812 -5.3730 12 1 4.4587 -4.7202 -5.9252 13 6 3.2885 -6.5036 -5.8434 14 7 2.3877 -7.1865 -5.1713 15 14 3.9845 -7.1897 -7.4353 16 1 4.9756 -6.2355 -7.9942 17 1 4.6482 -8.4904 -7.1654 18 1 2.8835 -7.3891 -8.4116 19 6 3.8965 -1.6901 -0.0156 20 6 3.4620 -0.9993 1.2815 21 7 2.0241 -0.7028 1.1939 22 6 1.1807 -1.0702 2.1788 23 8 0.0152 -0.7287 2.1395 24 8 1.6295 -1.8155 3.2062 25 6 0.6656 -2.1738 4.2313 26 6 -0.4709 -2.9825 3.6024 27 6 0.0973 -0.9019 4.8637 28 6 1.3546 -3.0151 5.3077 29 1 -0.3634 0.6311 0.8110 30 1 -0.3633 0.3868 -0.9521 31 1 -0.3633 -1.0180 0.1409 32 1 1.7786 -0.1528 -2.1337 33 1 1.5855 -1.7133 -1.2992 34 1 3.8336 -0.7147 -3.2325 35 1 5.1284 -1.5231 -2.3170 36 1 4.4302 -3.0600 -4.4179 37 1 3.3741 -5.4151 -3.2716 38 1 2.0784 -4.6071 -4.1863 39 1 2.0844 -8.0462 -5.5024 40 1 4.9790 -1.8180 -0.0146 41 1 3.4147 -2.6651 -0.0875 42 1 4.0202 -0.0716 1.4070 43 1 3.6486 -1.6598 2.1283 44 1 -0.9618 -2.3835 2.8354 45 1 -1.1942 -3.2518 4.3720 46 1 -0.0658 -3.8886 3.1519 47 1 -0.6267 -1.1708 5.6329 48 1 0.9068 -0.3258 5.3117 49 1 -0.3937 -0.3029 4.0967 50 1 1.7593 -3.9212 4.8568 51 1 2.1644 -2.4392 5.7558 52 1 0.6311 -3.2836 6.0774 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000741804017.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:34:40 Heat of formation + Delta-G solvation = -94.925942 kcal Electronic energy + Delta-G solvation = -31745.653881 eV Core-core repulsion = 27553.149413 eV Total energy + Delta-G solvation = -4192.504467 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.08341 -39.82752 -38.32599 -36.70122 -34.76649 -34.23733 -33.92213 -32.42314 -32.39933 -29.36728 -27.72657 -27.56208 -27.48025 -26.62781 -24.66993 -23.29246 -22.66942 -21.72557 -20.55552 -19.81137 -19.25024 -17.72063 -17.11025 -16.71149 -16.24654 -15.85904 -15.69043 -15.47432 -15.27153 -14.80248 -14.67871 -14.45832 -14.39931 -14.27465 -13.89932 -13.60891 -13.41660 -12.78084 -12.55816 -12.50884 -12.39333 -12.27608 -12.18605 -11.98905 -11.96179 -11.88407 -11.85380 -11.50320 -11.37840 -11.31523 -11.17259 -11.03343 -10.97664 -10.96378 -10.70289 -10.39299 -10.37416 -9.84756 -9.43449 -9.35241 -8.79028 -8.74891 -7.97146 -7.87188 -6.21643 -4.29068 2.11200 2.87342 3.19672 3.21004 3.27139 3.29987 3.72868 3.92379 4.04531 4.33155 4.58760 4.63184 4.77252 4.84694 4.92843 5.02081 5.14611 5.24445 5.30162 5.31397 5.32216 5.39563 5.45275 5.46443 5.50701 5.52528 5.59711 5.62942 5.68102 5.73849 5.75010 5.83657 5.84722 6.09394 6.13434 6.17237 6.21432 6.35229 6.38499 6.43485 6.63863 6.88253 7.01710 7.23476 7.36520 7.44420 7.45207 7.60208 7.91225 8.38242 8.53212 8.70901 9.00254 9.37889 10.88467 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.015459 B = 0.002472 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.866474 B =11324.250223 C =12137.395006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.169 3.831 3 H 0.077 0.923 4 C 0.019 3.981 5 N -0.514 5.514 6 C 0.032 3.968 7 C 0.464 3.536 8 O -0.554 6.554 9 N -0.709 5.709 10 C 0.249 3.751 11 C -0.544 4.544 12 H 0.064 0.936 13 C 0.063 3.937 14 N -0.885 5.885 15 Si 0.904 3.096 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.282 1.282 19 C 0.024 3.976 20 C 0.121 3.879 21 N -0.590 5.590 22 C 0.656 3.344 23 O -0.565 6.565 24 O -0.366 6.366 25 C 0.137 3.863 26 C -0.184 4.184 27 C -0.181 4.181 28 C -0.141 4.141 29 H 0.080 0.920 30 H 0.049 0.951 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.391 0.609 37 H 0.025 0.975 38 H 0.025 0.975 39 H 0.266 0.734 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.092 0.908 44 H 0.088 0.912 45 H 0.067 0.933 46 H 0.060 0.940 47 H 0.067 0.933 48 H 0.057 0.943 49 H 0.088 0.912 50 H 0.067 0.933 51 H 0.065 0.935 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.967 15.097 17.081 22.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.067 3.933 3 H 0.095 0.905 4 C -0.109 4.109 5 N -0.237 5.237 6 C -0.100 4.100 7 C 0.248 3.752 8 O -0.434 6.434 9 N -0.357 5.357 10 C 0.128 3.872 11 C -0.582 4.582 12 H 0.082 0.918 13 C -0.140 4.140 14 N -0.522 5.522 15 Si 0.731 3.269 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.208 1.208 19 C -0.104 4.104 20 C -0.002 4.002 21 N -0.331 5.331 22 C 0.411 3.589 23 O -0.455 6.455 24 O -0.281 6.281 25 C 0.100 3.900 26 C -0.241 4.241 27 C -0.238 4.238 28 C -0.198 4.198 29 H 0.099 0.901 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.224 0.776 37 H 0.043 0.957 38 H 0.043 0.957 39 H 0.075 0.925 40 H 0.100 0.900 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.110 0.890 44 H 0.107 0.893 45 H 0.086 0.914 46 H 0.079 0.921 47 H 0.086 0.914 48 H 0.076 0.924 49 H 0.107 0.893 50 H 0.086 0.914 51 H 0.084 0.916 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.086 15.110 17.747 23.308 hybrid contribution 0.415 -1.254 -1.398 1.923 sum 0.501 13.856 16.350 21.437 Atomic orbital electron populations 1.22189 0.92271 1.04174 1.01132 1.21228 0.95548 0.94749 0.81784 0.90488 1.22886 0.88077 1.02975 0.96999 1.62424 1.11453 1.47831 1.01968 1.22299 1.00652 0.93245 0.93783 1.21788 0.83493 0.87675 0.82217 1.90573 1.34596 1.70369 1.47891 1.46619 1.42974 1.22687 1.23435 1.19093 0.93809 0.78106 0.96171 1.21256 1.25011 1.04575 1.07381 0.91836 1.24963 0.94821 0.96548 0.97714 1.69977 1.29553 1.13968 1.38751 0.86359 0.78888 0.78975 0.82688 1.19603 1.20773 1.20761 1.22670 1.00898 0.97141 0.89735 1.21789 0.79646 1.00560 0.98187 1.47081 1.07707 1.59671 1.18633 1.18015 0.83710 0.77428 0.79743 1.90910 1.16544 1.59687 1.78362 1.86294 1.43363 1.65891 1.32572 1.22012 0.87695 0.94999 0.85310 1.22516 0.98149 1.00751 1.02675 1.22496 1.01577 0.97626 1.02108 1.21856 1.01233 0.99868 0.96823 0.90128 0.93227 0.91502 0.90088 0.89403 0.87998 0.88080 0.77633 0.95682 0.95656 0.92465 0.89998 0.91050 0.90878 0.88981 0.89294 0.91399 0.92059 0.91394 0.92417 0.89346 0.91394 0.91636 0.90313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 7.63 37.16 0.28 -1.56 16 2 C 0.17 2.17 3.63 -67.72 -0.25 1.93 16 3 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 4 C 0.02 0.27 4.36 -3.93 -0.02 0.25 16 5 N -0.51 -6.74 4.83 -236.05 -1.14 -7.88 16 6 C 0.03 0.41 5.85 -4.98 -0.03 0.39 16 7 C 0.46 8.53 7.25 -10.98 -0.08 8.45 16 8 O -0.55 -12.27 11.65 5.56 0.06 -12.20 16 9 N -0.71 -14.17 5.55 -61.47 -0.34 -14.51 16 10 C 0.25 6.47 5.43 -5.19 -0.03 6.44 16 11 C -0.54 -14.54 9.28 -34.44 -0.32 -14.86 16 12 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 13 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 14 N -0.89 -25.95 13.29 55.43 0.74 -25.21 16 15 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 16 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 C 0.02 0.32 5.23 -3.70 -0.02 0.30 16 20 C 0.12 1.41 6.63 -3.60 -0.02 1.38 16 21 N -0.59 -7.92 3.02 -170.94 -0.52 -8.44 16 22 C 0.66 9.40 7.51 54.06 0.41 9.80 16 23 O -0.56 -8.55 7.61 -19.28 -0.15 -8.70 16 24 O -0.37 -4.84 8.57 -40.31 -0.35 -5.18 16 25 C 0.14 1.49 1.13 -90.62 -0.10 1.39 16 26 C -0.18 -2.10 8.37 37.16 0.31 -1.79 16 27 C -0.18 -1.79 8.37 37.15 0.31 -1.48 16 28 C -0.14 -1.17 8.85 37.16 0.33 -0.84 16 29 H 0.08 1.09 6.60 -51.93 -0.34 0.74 16 30 H 0.05 0.57 8.13 -51.93 -0.42 0.15 16 31 H 0.07 1.05 6.97 -51.93 -0.36 0.68 16 32 H 0.08 1.04 8.11 -51.93 -0.42 0.62 16 33 H 0.09 1.60 5.42 -51.93 -0.28 1.32 16 34 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.10 1.10 8.05 -51.93 -0.42 0.68 16 36 H 0.39 6.63 8.32 -40.82 -0.34 6.29 16 37 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 40 H 0.08 0.92 8.04 -51.93 -0.42 0.50 16 41 H 0.07 1.22 6.04 -51.93 -0.31 0.91 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.09 1.02 6.97 -51.93 -0.36 0.66 16 44 H 0.09 1.22 5.88 -51.93 -0.31 0.91 16 45 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.09 1.06 5.88 -51.92 -0.31 0.76 16 50 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 51 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 52 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 398.36 15.07 6.00 6.00 Total: -1.00 -32.16 398.36 -8.93 -41.09 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -8.90 Total: 7.95 kcal Atomic # 6 Polarization: 10.77 SS G_CDS: 0.68 Total: 11.44 kcal Atomic # 7 Polarization: -54.78 SS G_CDS: -1.26 Total: -56.04 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: -0.43 Total: -26.08 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.16 -8.93 -41.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741804017.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.840 kcal (2) G-P(sol) polarization free energy of solvation -32.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds