Wall clock time and date at job start Wed Apr 1 2020 01:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.78297 * 2 1 4 4 C 1.52783 * 109.55532 * 239.76971 * 2 1 3 5 5 N 1.46905 * 109.42104 * 186.60890 * 4 2 1 6 6 C 1.46897 * 111.00010 * 187.11167 * 5 4 2 7 7 C 1.50700 * 109.47253 * 301.74685 * 6 5 4 8 8 O 1.21280 * 119.99794 * 359.97438 * 7 6 5 9 9 N 1.34778 * 119.99565 * 179.97438 * 7 6 5 10 10 C 1.46504 * 119.99587 * 179.97438 * 9 7 6 11 11 C 1.50697 * 109.47060 * 180.02562 * 10 9 7 12 12 H 1.08000 * 120.00235 * 359.97438 * 11 10 9 13 13 C 1.37875 * 119.99884 * 180.02562 * 11 10 9 14 14 N 1.31508 * 120.00375 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99744 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47511 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.46963 * 119.99986 * 15 13 11 18 18 H 1.48496 * 109.47358 * 239.99811 * 15 13 11 19 19 C 1.46903 * 111.26843 * 62.96657 * 5 4 2 20 20 C 1.53246 * 109.33633 * 296.89454 * 19 5 4 21 21 N 1.47080 * 108.52438 * 53.83213 * 20 19 5 22 22 C 1.34777 * 120.88506 * 128.81150 * 21 20 19 23 23 O 1.21507 * 119.99909 * 174.37969 * 22 21 20 24 24 O 1.34633 * 119.99804 * 354.38326 * 22 21 20 25 25 C 1.45203 * 116.99980 * 179.97438 * 24 22 21 26 26 C 1.53004 * 109.46941 * 59.99910 * 25 24 22 27 27 C 1.52990 * 109.46985 * 299.99671 * 25 24 22 28 28 C 1.53002 * 109.47120 * 179.97438 * 25 24 22 29 29 H 1.09001 * 109.47315 * 307.88756 * 1 2 3 30 30 H 1.09002 * 109.47008 * 67.88871 * 1 2 3 31 31 H 1.09001 * 109.46860 * 187.88108 * 1 2 3 32 32 H 1.09001 * 109.56921 * 66.55861 * 4 2 1 33 33 H 1.08996 * 109.36199 * 306.53783 * 4 2 1 34 34 H 1.09003 * 109.46895 * 61.74592 * 6 5 4 35 35 H 1.08998 * 109.46686 * 181.74279 * 6 5 4 36 36 H 0.96997 * 120.00317 * 0.02562 * 9 7 6 37 37 H 1.09003 * 109.47293 * 300.00229 * 10 9 7 38 38 H 1.08997 * 109.46887 * 60.00433 * 10 9 7 39 39 H 0.96995 * 120.00572 * 179.97438 * 14 13 11 40 40 H 1.08998 * 109.49295 * 176.93870 * 19 5 4 41 41 H 1.08996 * 109.49320 * 56.85354 * 19 5 4 42 42 H 1.08999 * 109.62927 * 294.12003 * 20 19 5 43 43 H 1.08997 * 109.62716 * 173.53570 * 20 19 5 44 44 H 1.08998 * 109.47049 * 299.99955 * 26 25 24 45 45 H 1.08996 * 109.47099 * 179.97438 * 26 25 24 46 46 H 1.09002 * 109.46872 * 59.99991 * 26 25 24 47 47 H 1.09005 * 109.46979 * 179.97438 * 27 25 24 48 48 H 1.08997 * 109.47434 * 300.00146 * 27 25 24 49 49 H 1.09008 * 109.47036 * 60.00009 * 27 25 24 50 50 H 1.08999 * 109.47106 * 300.00568 * 28 25 24 51 51 H 1.09005 * 109.46491 * 60.00500 * 28 25 24 52 52 H 1.08995 * 109.47055 * 179.97438 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8990 1.0256 0.0000 4 6 2.0414 -0.7249 -1.2439 5 7 3.5018 -0.8624 -1.1633 6 6 4.0496 -1.4024 -2.4148 7 6 3.4185 -2.7401 -2.7036 8 8 2.5940 -3.1987 -1.9415 9 7 3.7705 -3.4267 -3.8087 10 6 3.1574 -4.7274 -4.0891 11 6 3.7193 -5.2812 -5.3730 12 1 4.4587 -4.7202 -5.9252 13 6 3.2885 -6.5036 -5.8434 14 7 2.3877 -7.1865 -5.1713 15 14 3.9845 -7.1897 -7.4353 16 1 4.9756 -6.2355 -7.9942 17 1 4.6482 -8.4904 -7.1654 18 1 2.8835 -7.3891 -8.4116 19 6 3.8965 -1.6901 -0.0156 20 6 3.4620 -0.9993 1.2815 21 7 2.0241 -0.7028 1.1939 22 6 1.1807 -1.0702 2.1788 23 8 0.0152 -0.7287 2.1395 24 8 1.6295 -1.8155 3.2062 25 6 0.6656 -2.1738 4.2313 26 6 -0.4709 -2.9825 3.6024 27 6 0.0973 -0.9019 4.8637 28 6 1.3546 -3.0151 5.3077 29 1 -0.3634 0.6311 0.8110 30 1 -0.3633 0.3868 -0.9521 31 1 -0.3633 -1.0180 0.1409 32 1 1.7786 -0.1528 -2.1337 33 1 1.5855 -1.7133 -1.2992 34 1 3.8336 -0.7147 -3.2325 35 1 5.1284 -1.5231 -2.3170 36 1 4.4302 -3.0600 -4.4179 37 1 3.3741 -5.4151 -3.2716 38 1 2.0784 -4.6071 -4.1863 39 1 2.0844 -8.0462 -5.5024 40 1 4.9790 -1.8180 -0.0146 41 1 3.4147 -2.6651 -0.0875 42 1 4.0202 -0.0716 1.4070 43 1 3.6486 -1.6598 2.1283 44 1 -0.9618 -2.3835 2.8354 45 1 -1.1942 -3.2518 4.3720 46 1 -0.0658 -3.8886 3.1519 47 1 -0.6267 -1.1708 5.6329 48 1 0.9068 -0.3258 5.3117 49 1 -0.3937 -0.3029 4.0967 50 1 1.7593 -3.9212 4.8568 51 1 2.1644 -2.4392 5.7558 52 1 0.6311 -3.2836 6.0774 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000741804017.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:34:40 Heat of formation + Delta-G solvation = -118.982913 kcal Electronic energy + Delta-G solvation = -31746.697069 eV Core-core repulsion = 27553.149413 eV Total energy + Delta-G solvation = -4193.547656 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.14068 -41.13917 -39.52785 -37.83861 -36.25502 -35.60229 -34.99127 -34.38913 -33.44040 -30.69394 -29.25433 -28.37141 -28.31514 -28.01769 -25.96113 -24.41830 -24.31983 -22.94630 -21.60853 -21.37006 -20.29618 -19.06948 -18.55228 -17.73887 -17.61082 -17.20499 -17.15686 -16.74650 -16.45312 -16.24108 -15.96324 -15.67476 -15.55942 -15.47673 -15.06633 -14.77257 -14.50725 -14.21925 -14.14676 -13.82492 -13.48338 -13.41119 -13.22905 -13.16420 -13.03707 -12.90590 -12.88818 -12.79645 -12.77278 -12.46126 -12.38621 -12.36659 -12.23847 -12.12825 -11.98086 -11.91810 -11.48132 -11.35432 -11.32810 -10.83727 -10.42473 -9.82461 -9.81406 -9.16710 -8.32112 -6.49208 1.13125 1.41174 1.42058 1.55701 1.73143 1.79079 2.30745 2.62047 2.74758 2.86856 3.02854 3.75380 3.80197 3.81664 3.88617 3.95182 3.99242 3.99837 4.22978 4.30310 4.39254 4.47313 4.52805 4.60474 4.61192 4.63273 4.66686 4.75349 4.77452 4.79143 4.84946 4.87374 4.93749 5.05081 5.07689 5.08771 5.20039 5.22814 5.25832 5.28036 5.34470 5.48254 5.49214 5.55651 5.68538 5.78997 5.83888 5.89200 6.39365 6.63298 6.89909 7.21174 7.31481 7.50362 8.80006 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.015459 B = 0.002472 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.866474 B =11324.250223 C =12137.395006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.171 3.829 3 H 0.103 0.897 4 C 0.024 3.976 5 N -0.498 5.498 6 C 0.044 3.956 7 C 0.459 3.541 8 O -0.595 6.595 9 N -0.706 5.706 10 C 0.269 3.731 11 C -0.554 4.554 12 H 0.086 0.914 13 C 0.001 3.999 14 N -0.933 5.933 15 Si 0.985 3.015 16 H -0.250 1.250 17 H -0.279 1.279 18 H -0.280 1.280 19 C 0.026 3.974 20 C 0.124 3.876 21 N -0.597 5.597 22 C 0.646 3.354 23 O -0.580 6.580 24 O -0.373 6.373 25 C 0.125 3.875 26 C -0.180 4.180 27 C -0.173 4.173 28 C -0.135 4.135 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.031 0.969 32 H 0.097 0.903 33 H 0.041 0.959 34 H 0.134 0.866 35 H 0.136 0.864 36 H 0.409 0.591 37 H -0.018 1.018 38 H -0.019 1.019 39 H 0.268 0.732 40 H 0.108 0.892 41 H 0.024 0.976 42 H 0.101 0.899 43 H 0.094 0.906 44 H 0.061 0.939 45 H 0.092 0.908 46 H 0.045 0.955 47 H 0.089 0.911 48 H 0.065 0.935 49 H 0.063 0.937 50 H 0.059 0.941 51 H 0.075 0.925 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.427 17.190 16.844 24.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.069 3.931 3 H 0.121 0.879 4 C -0.105 4.105 5 N -0.219 5.219 6 C -0.087 4.087 7 C 0.246 3.754 8 O -0.477 6.477 9 N -0.357 5.357 10 C 0.145 3.855 11 C -0.591 4.591 12 H 0.104 0.896 13 C -0.198 4.198 14 N -0.572 5.572 15 Si 0.808 3.192 16 H -0.174 1.174 17 H -0.205 1.205 18 H -0.206 1.206 19 C -0.103 4.103 20 C 0.002 3.998 21 N -0.338 5.338 22 C 0.402 3.598 23 O -0.471 6.471 24 O -0.289 6.289 25 C 0.089 3.911 26 C -0.238 4.238 27 C -0.230 4.230 28 C -0.192 4.192 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.050 0.950 32 H 0.115 0.885 33 H 0.059 0.941 34 H 0.152 0.848 35 H 0.154 0.846 36 H 0.245 0.755 37 H 0.000 1.000 38 H -0.001 1.001 39 H 0.077 0.923 40 H 0.126 0.874 41 H 0.043 0.957 42 H 0.119 0.881 43 H 0.112 0.888 44 H 0.080 0.920 45 H 0.111 0.889 46 H 0.065 0.935 47 H 0.108 0.892 48 H 0.084 0.916 49 H 0.082 0.918 50 H 0.078 0.922 51 H 0.094 0.906 52 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.586 17.252 17.518 24.723 hybrid contribution -0.426 -1.912 -1.233 2.315 sum 2.160 15.340 16.286 22.477 Atomic orbital electron populations 1.22039 0.92936 1.01908 1.01799 1.21273 0.95023 0.95649 0.81139 0.87897 1.22786 0.88533 1.00784 0.98418 1.62532 1.10537 1.46814 1.02034 1.22518 1.01892 0.89699 0.94620 1.22999 0.82554 0.89176 0.80637 1.90604 1.36375 1.71746 1.49003 1.46360 1.43533 1.20929 1.24860 1.18447 0.91712 0.80334 0.94966 1.21669 1.25148 1.04935 1.07397 0.89628 1.26097 0.94946 0.96994 1.01756 1.70146 1.31355 1.14584 1.41100 0.85111 0.78340 0.78316 0.77465 1.17367 1.20517 1.20565 1.22681 1.01972 0.95031 0.90609 1.21894 0.78806 1.01733 0.97361 1.47262 1.08464 1.59543 1.18492 1.18240 0.83733 0.77588 0.80248 1.90905 1.17152 1.60210 1.78811 1.86296 1.44210 1.65569 1.32776 1.22370 0.87567 0.95853 0.85336 1.22476 0.98922 0.99686 1.02682 1.22411 1.02079 0.96730 1.01777 1.21875 1.01979 0.99060 0.96291 0.90427 0.91664 0.94986 0.88462 0.94122 0.84836 0.84614 0.75481 1.00032 1.00097 0.92325 0.87390 0.95723 0.88061 0.88782 0.92032 0.88924 0.93547 0.89217 0.91593 0.91781 0.92163 0.90641 0.87916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.50 7.63 71.98 0.55 -2.95 16 2 C 0.17 4.30 3.63 44.81 0.16 4.46 16 3 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 4 C 0.02 0.65 4.36 86.23 0.38 1.03 16 5 N -0.50 -12.02 4.83 -900.73 -4.35 -16.37 16 6 C 0.04 1.02 5.85 85.56 0.50 1.52 16 7 C 0.46 17.01 7.25 87.66 0.64 17.65 16 8 O -0.59 -27.95 11.65 -3.03 -0.04 -27.99 16 9 N -0.71 -28.46 5.55 -466.78 -2.59 -31.05 16 10 C 0.27 14.66 5.43 85.63 0.46 15.12 16 11 C -0.55 -29.86 9.28 25.60 0.24 -29.63 16 12 H 0.09 4.14 7.60 -2.91 -0.02 4.12 16 13 C 0.00 0.08 5.46 84.65 0.46 0.54 16 14 N -0.93 -56.71 13.29 21.45 0.28 -56.42 16 15 Si 0.98 42.16 29.54 68.60 2.03 44.19 16 16 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 17 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 18 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 19 C 0.03 0.65 5.23 86.38 0.45 1.10 16 20 C 0.12 2.72 6.63 86.35 0.57 3.30 16 21 N -0.60 -15.99 3.02 -925.13 -2.79 -18.78 16 22 C 0.65 19.13 7.51 129.79 0.97 20.10 16 23 O -0.58 -18.49 7.61 19.82 0.15 -18.34 16 24 O -0.37 -10.06 8.57 -55.43 -0.47 -10.54 16 25 C 0.12 2.71 1.13 -10.79 -0.01 2.70 16 26 C -0.18 -4.32 8.37 71.98 0.60 -3.71 16 27 C -0.17 -3.29 8.37 71.98 0.60 -2.68 16 28 C -0.14 -2.07 8.85 71.98 0.64 -1.43 16 29 H 0.08 2.14 6.60 -2.39 -0.02 2.12 16 30 H 0.06 1.51 8.13 -2.39 -0.02 1.49 16 31 H 0.03 1.07 6.97 -2.39 -0.02 1.06 16 32 H 0.10 2.35 8.11 -2.39 -0.02 2.33 16 33 H 0.04 1.57 5.42 -2.39 -0.01 1.55 16 34 H 0.13 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.14 2.33 8.05 -2.39 -0.02 2.32 16 36 H 0.41 13.26 8.32 -92.71 -0.77 12.49 16 37 H -0.02 -1.14 8.14 -2.39 -0.02 -1.15 16 38 H -0.02 -1.18 8.14 -2.39 -0.02 -1.20 16 39 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 40 H 0.11 2.15 8.04 -2.39 -0.02 2.13 16 41 H 0.02 0.87 6.04 -2.39 -0.01 0.86 16 42 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.09 2.02 6.97 -2.39 -0.02 2.00 16 44 H 0.06 1.82 5.88 -2.39 -0.01 1.81 16 45 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 48 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 49 H 0.06 1.56 5.88 -2.38 -0.01 1.55 16 50 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 51 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 52 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -76.77 398.36 -0.42 -77.19 By element: Atomic # 1 Polarization: 30.86 SS G_CDS: 0.14 Total: 31.00 kcal Atomic # 6 Polarization: 19.89 SS G_CDS: 7.22 Total: 27.11 kcal Atomic # 7 Polarization: -113.17 SS G_CDS: -9.45 Total: -122.62 kcal Atomic # 8 Polarization: -56.51 SS G_CDS: -0.36 Total: -56.86 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -76.77 -0.42 -77.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741804017.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.798 kcal (2) G-P(sol) polarization free energy of solvation -76.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds