Wall clock time and date at job start Wed Apr 1 2020 01:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08987 * 109.62750 * 2 1 4 4 C 1.53238 * 109.78663 * 120.48953 * 2 1 3 5 5 N 1.46903 * 109.33533 * 173.63173 * 4 2 1 6 6 C 1.46900 * 110.99671 * 172.74341 * 5 4 2 7 7 C 1.50698 * 109.47027 * 190.34906 * 6 5 4 8 8 O 1.21285 * 120.00135 * 359.97438 * 7 6 5 9 9 N 1.34783 * 120.00132 * 180.02562 * 7 6 5 10 10 C 1.46497 * 119.99976 * 180.02562 * 9 7 6 11 11 C 1.50706 * 109.47064 * 179.97438 * 10 9 7 12 12 H 1.07992 * 119.99738 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99891 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00388 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99663 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46859 * 179.97438 * 15 13 11 17 17 H 1.48495 * 109.47217 * 299.99616 * 15 13 11 18 18 H 1.48497 * 109.47109 * 60.00162 * 15 13 11 19 19 C 1.46896 * 111.27303 * 296.89041 * 5 4 2 20 20 C 1.53239 * 109.33558 * 63.10710 * 19 5 4 21 21 N 1.47081 * 109.62349 * 239.61012 * 2 1 3 22 22 C 1.34772 * 120.88424 * 8.89680 * 21 2 1 23 23 O 1.21510 * 120.00257 * 355.20389 * 22 21 2 24 24 O 1.34640 * 120.00129 * 175.21287 * 22 21 2 25 25 C 1.45199 * 117.00102 * 179.97438 * 24 22 21 26 26 C 1.53003 * 109.46681 * 60.00021 * 25 24 22 27 27 C 1.53001 * 109.47287 * 179.97438 * 25 24 22 28 28 C 1.53000 * 109.47257 * 300.00207 * 25 24 22 29 29 H 1.08997 * 109.46955 * 174.13176 * 1 2 3 30 30 H 1.08998 * 109.47043 * 294.12496 * 1 2 3 31 31 H 1.08996 * 109.47305 * 54.12730 * 1 2 3 32 32 H 1.08996 * 109.49829 * 53.67336 * 4 2 1 33 33 H 1.09002 * 109.49026 * 293.58967 * 4 2 1 34 34 H 1.08997 * 109.47327 * 70.35023 * 6 5 4 35 35 H 1.09000 * 109.47604 * 310.34552 * 6 5 4 36 36 H 0.97002 * 119.99832 * 359.97438 * 9 7 6 37 37 H 1.09002 * 109.47542 * 59.99545 * 10 9 7 38 38 H 1.09002 * 109.47325 * 299.99573 * 10 9 7 39 39 H 0.97000 * 119.99789 * 0.02562 * 14 13 11 40 40 H 1.08997 * 109.49405 * 183.06096 * 19 5 4 41 41 H 1.08998 * 109.49072 * 303.12685 * 19 5 4 42 42 H 1.08997 * 109.63204 * 65.87756 * 20 19 5 43 43 H 1.09001 * 109.62659 * 186.27059 * 20 19 5 44 44 H 1.08994 * 109.47491 * 60.00049 * 26 25 24 45 45 H 1.09006 * 109.46655 * 180.02562 * 26 25 24 46 46 H 1.09000 * 109.47331 * 299.99645 * 26 25 24 47 47 H 1.08998 * 109.46535 * 60.00142 * 27 25 24 48 48 H 1.08995 * 109.47184 * 180.02562 * 27 25 24 49 49 H 1.08999 * 109.47195 * 300.00827 * 27 25 24 50 50 H 1.08994 * 109.47009 * 59.99729 * 28 25 24 51 51 H 1.09001 * 109.47049 * 180.02562 * 28 25 24 52 52 H 1.09005 * 109.46645 * 299.99704 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8961 1.0265 0.0000 4 6 2.0488 -0.7316 1.2425 5 7 3.5097 -0.8597 1.1570 6 6 4.0646 -1.4007 2.4050 7 6 5.5667 -1.2816 2.3800 8 8 6.1205 -0.7946 1.4172 9 7 6.2948 -1.7174 3.4272 10 6 7.7549 -1.6012 3.4031 11 6 8.3242 -2.1562 4.6834 12 1 7.6643 -2.5552 5.4394 13 6 9.6875 -2.1537 4.8898 14 7 10.4910 -1.6674 3.9693 15 14 10.3930 -2.8411 6.4770 16 1 11.8732 -2.7234 6.4525 17 1 9.8542 -2.0764 7.6303 18 1 10.0128 -4.2704 6.6096 19 6 3.9063 -1.6807 0.0052 20 6 3.4636 -0.9880 -1.2880 21 7 2.0240 -0.7008 -1.1950 22 6 1.1800 -1.0703 -2.1787 23 8 -0.0164 -0.9039 -2.0470 24 8 1.6625 -1.6240 -3.3071 25 6 0.6955 -1.9980 -4.3236 26 6 -0.0780 -0.7567 -4.7728 27 6 1.4255 -2.6052 -5.5233 28 6 -0.2801 -3.0255 -3.7461 29 1 -0.3633 -1.0223 -0.1051 30 1 -0.3633 0.4200 0.9379 31 1 -0.3634 0.6022 -0.8327 32 1 1.5992 -1.7231 1.2951 33 1 1.7850 -0.1644 2.1352 34 1 3.7849 -2.4496 2.5024 35 1 3.6698 -0.8392 3.2517 36 1 5.8519 -2.1073 4.1972 37 1 8.0344 -0.5520 3.3064 38 1 8.1502 -2.1620 2.5561 39 1 10.1246 -1.3101 3.1453 40 1 4.9895 -1.8017 0.0005 41 1 3.4311 -2.6591 0.0752 42 1 4.0155 -0.0563 -1.4118 43 1 3.6550 -1.6428 -2.1381 44 1 0.6169 -0.0247 -5.1843 45 1 -0.8043 -1.0375 -5.5356 46 1 -0.5981 -0.3237 -3.9184 47 1 1.9768 -3.4895 -5.2035 48 1 0.6996 -2.8856 -6.2865 49 1 2.1203 -1.8730 -5.9345 50 1 -0.8001 -2.5924 -2.8916 51 1 -1.0057 -3.3065 -4.5093 52 1 0.2711 -3.9098 -3.4260 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000741804018.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:34:44 Heat of formation + Delta-G solvation = -98.110093 kcal Electronic energy + Delta-G solvation = -31083.953882 eV Core-core repulsion = 26891.311339 eV Total energy + Delta-G solvation = -4192.642542 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.24743 -39.66020 -38.57197 -36.97407 -34.94717 -34.46493 -34.11132 -32.60245 -32.43986 -29.42583 -27.80582 -27.68040 -27.66156 -26.44919 -24.64054 -23.48294 -22.76668 -21.95669 -20.76972 -19.76796 -19.42499 -17.71749 -17.47900 -16.85596 -16.49232 -16.31229 -15.75454 -15.44689 -15.40166 -14.89781 -14.82742 -14.50592 -14.35845 -14.11802 -13.79393 -13.77523 -13.73460 -12.94030 -12.76384 -12.73844 -12.63704 -12.48247 -12.38553 -12.28924 -12.16015 -12.07914 -11.76801 -11.73127 -11.68669 -11.46548 -11.31455 -11.28545 -11.10296 -11.02715 -10.78704 -10.55932 -10.18366 -9.53499 -9.30580 -8.89478 -8.78669 -8.70876 -8.35408 -8.02651 -6.54381 -4.28286 1.93398 2.66672 3.22126 3.35366 3.37348 3.44965 3.56509 3.61230 4.15883 4.42819 4.43571 4.47402 4.59895 4.62153 4.72858 4.85024 5.01866 5.11747 5.16627 5.17704 5.23713 5.24286 5.28302 5.33724 5.37277 5.39105 5.42453 5.46113 5.47962 5.50515 5.56086 5.60524 5.69049 5.84407 5.90939 5.98171 5.99829 6.00459 6.16055 6.24906 6.41549 6.75156 6.92200 6.98804 7.18712 7.26616 7.27970 7.62553 8.18754 8.23455 8.42788 8.68205 8.94367 9.45445 10.85724 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.023285 B = 0.001997 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.212073 B =14018.439404 C =14704.586364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.165 3.835 3 H 0.085 0.915 4 C 0.044 3.956 5 N -0.519 5.519 6 C 0.037 3.963 7 C 0.499 3.501 8 O -0.540 6.540 9 N -0.709 5.709 10 C 0.242 3.758 11 C -0.624 4.624 12 H 0.057 0.943 13 C 0.022 3.978 14 N -0.901 5.901 15 Si 1.076 2.924 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.287 1.287 19 C 0.037 3.963 20 C 0.120 3.880 21 N -0.594 5.594 22 C 0.654 3.346 23 O -0.566 6.566 24 O -0.365 6.365 25 C 0.136 3.864 26 C -0.182 4.182 27 C -0.141 4.141 28 C -0.182 4.182 29 H 0.071 0.929 30 H 0.048 0.952 31 H 0.076 0.924 32 H 0.040 0.960 33 H 0.091 0.909 34 H 0.059 0.941 35 H 0.102 0.898 36 H 0.392 0.608 37 H 0.017 0.983 38 H 0.016 0.984 39 H 0.273 0.727 40 H 0.112 0.888 41 H 0.031 0.969 42 H 0.082 0.918 43 H 0.093 0.907 44 H 0.058 0.942 45 H 0.068 0.932 46 H 0.088 0.912 47 H 0.066 0.934 48 H 0.079 0.921 49 H 0.066 0.934 50 H 0.087 0.913 51 H 0.068 0.932 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.648 -0.774 -13.826 27.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.063 3.937 3 H 0.103 0.897 4 C -0.084 4.084 5 N -0.244 5.244 6 C -0.094 4.094 7 C 0.283 3.717 8 O -0.418 6.418 9 N -0.358 5.358 10 C 0.120 3.880 11 C -0.662 4.662 12 H 0.075 0.925 13 C -0.184 4.184 14 N -0.535 5.535 15 Si 0.903 3.097 16 H -0.205 1.205 17 H -0.213 1.213 18 H -0.213 1.213 19 C -0.091 4.091 20 C -0.002 4.002 21 N -0.335 5.335 22 C 0.410 3.590 23 O -0.457 6.457 24 O -0.280 6.280 25 C 0.099 3.901 26 C -0.239 4.239 27 C -0.198 4.198 28 C -0.239 4.239 29 H 0.090 0.910 30 H 0.067 0.933 31 H 0.095 0.905 32 H 0.058 0.942 33 H 0.109 0.891 34 H 0.077 0.923 35 H 0.120 0.880 36 H 0.225 0.775 37 H 0.035 0.965 38 H 0.034 0.966 39 H 0.083 0.917 40 H 0.130 0.870 41 H 0.050 0.950 42 H 0.100 0.900 43 H 0.112 0.888 44 H 0.078 0.922 45 H 0.087 0.913 46 H 0.106 0.894 47 H 0.085 0.915 48 H 0.097 0.903 49 H 0.086 0.914 50 H 0.106 0.894 51 H 0.087 0.913 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -21.973 -0.212 -13.819 25.958 hybrid contribution -1.945 -0.767 -0.270 2.108 sum -23.918 -0.979 -14.089 27.776 Atomic orbital electron populations 1.22211 0.91960 1.04169 1.01137 1.21366 0.95481 0.95454 0.81427 0.89729 1.22630 0.87560 0.99892 0.98355 1.61545 1.09062 1.51440 1.02309 1.21995 0.94232 0.99658 0.93562 1.20326 0.88601 0.79070 0.83655 1.90622 1.72811 1.44650 1.33698 1.46284 1.09777 1.60944 1.18842 1.19146 0.74448 0.96657 0.97700 1.22062 0.95006 1.46090 1.03084 0.92504 1.25883 0.93330 0.95292 1.03869 1.70764 1.38257 1.36410 1.08114 0.83449 0.76413 0.75990 0.73875 1.20546 1.21270 1.21306 1.22674 1.03599 0.93294 0.89518 1.21831 0.78853 1.01620 0.97918 1.47190 1.08056 1.59946 1.18270 1.18063 0.84068 0.76844 0.80076 1.90928 1.14113 1.60087 1.80577 1.86322 1.41345 1.74310 1.26018 1.22033 0.87595 0.94945 0.85501 1.22504 1.00776 0.97319 1.03301 1.21861 1.01102 1.01493 0.95390 1.22503 0.99523 0.98574 1.03314 0.91029 0.93291 0.90492 0.94225 0.89110 0.92276 0.88031 0.77523 0.96509 0.96614 0.91691 0.87026 0.95035 0.90018 0.88843 0.92249 0.91337 0.89364 0.91470 0.90253 0.91443 0.89382 0.91314 0.92306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 7.62 37.16 0.28 -1.09 16 2 C 0.16 1.77 3.64 -67.49 -0.25 1.53 16 3 H 0.08 0.92 8.14 -51.94 -0.42 0.50 16 4 C 0.04 0.47 4.92 -3.70 -0.02 0.45 16 5 N -0.52 -6.90 4.36 -235.77 -1.03 -7.93 16 6 C 0.04 0.49 5.45 -4.98 -0.03 0.47 16 7 C 0.50 9.40 7.49 -10.98 -0.08 9.32 16 8 O -0.54 -12.11 14.36 5.55 0.08 -12.03 16 9 N -0.71 -14.44 5.55 -61.47 -0.34 -14.78 16 10 C 0.24 6.24 4.74 -5.19 -0.02 6.22 16 11 C -0.62 -16.90 9.28 -34.44 -0.32 -17.22 16 12 H 0.06 1.45 7.60 -52.49 -0.40 1.06 16 13 C 0.02 0.62 5.46 -17.82 -0.10 0.52 16 14 N -0.90 -27.02 13.65 55.43 0.76 -26.27 16 15 Si 1.08 24.12 29.90 -169.99 -5.08 19.04 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 17 H -0.29 -6.09 7.11 56.52 0.40 -5.69 16 18 H -0.29 -6.10 7.11 56.52 0.40 -5.69 16 19 C 0.04 0.50 5.26 -3.70 -0.02 0.48 16 20 C 0.12 1.44 6.59 -3.60 -0.02 1.42 16 21 N -0.59 -7.01 3.01 -170.67 -0.51 -7.53 16 22 C 0.65 8.00 7.64 54.05 0.41 8.42 16 23 O -0.57 -7.21 7.38 -19.28 -0.14 -7.35 16 24 O -0.36 -4.18 8.60 -40.33 -0.35 -4.53 16 25 C 0.14 1.24 1.13 -90.62 -0.10 1.13 16 26 C -0.18 -1.56 8.37 37.16 0.31 -1.25 16 27 C -0.14 -0.97 8.85 37.16 0.33 -0.64 16 28 C -0.18 -1.59 8.37 37.16 0.31 -1.28 16 29 H 0.07 0.81 6.78 -51.93 -0.35 0.46 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.86 6.76 -51.93 -0.35 0.51 16 32 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.09 0.81 7.99 -51.93 -0.41 0.40 16 34 H 0.06 0.71 8.12 -51.93 -0.42 0.28 16 35 H 0.10 1.15 7.96 -51.93 -0.41 0.74 16 36 H 0.39 6.88 8.32 -40.82 -0.34 6.54 16 37 H 0.02 0.48 8.01 -51.93 -0.42 0.06 16 38 H 0.02 0.45 8.01 -51.93 -0.42 0.03 16 39 H 0.27 8.27 7.22 -40.82 -0.29 7.97 16 40 H 0.11 1.79 5.80 -51.93 -0.30 1.49 16 41 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.09 1.04 7.04 -51.93 -0.37 0.67 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.09 0.93 5.88 -51.93 -0.31 0.63 16 47 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.09 0.94 5.88 -51.93 -0.31 0.64 16 51 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 52 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 402.03 15.07 6.06 6.06 Total: -1.00 -32.49 402.03 -8.84 -41.32 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -8.96 Total: 5.52 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: 0.69 Total: 8.47 kcal Atomic # 7 Polarization: -55.38 SS G_CDS: -1.13 Total: -56.51 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -0.41 Total: -23.90 kcal Atomic # 14 Polarization: 24.12 SS G_CDS: -5.08 Total: 19.04 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.49 -8.84 -41.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741804018.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.785 kcal (2) G-P(sol) polarization free energy of solvation -32.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds