Wall clock time and date at job start Wed Apr 1 2020 01:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08987 * 109.62750 * 2 1 4 4 C 1.53238 * 109.78663 * 120.48953 * 2 1 3 5 5 N 1.46903 * 109.33533 * 173.63173 * 4 2 1 6 6 C 1.46900 * 110.99671 * 172.74341 * 5 4 2 7 7 C 1.50698 * 109.47027 * 190.34906 * 6 5 4 8 8 O 1.21285 * 120.00135 * 359.97438 * 7 6 5 9 9 N 1.34783 * 120.00132 * 180.02562 * 7 6 5 10 10 C 1.46497 * 119.99976 * 180.02562 * 9 7 6 11 11 C 1.50706 * 109.47064 * 179.97438 * 10 9 7 12 12 H 1.07992 * 119.99738 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99891 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00388 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99663 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46859 * 179.97438 * 15 13 11 17 17 H 1.48495 * 109.47217 * 299.99616 * 15 13 11 18 18 H 1.48497 * 109.47109 * 60.00162 * 15 13 11 19 19 C 1.46896 * 111.27303 * 296.89041 * 5 4 2 20 20 C 1.53239 * 109.33558 * 63.10710 * 19 5 4 21 21 N 1.47081 * 109.62349 * 239.61012 * 2 1 3 22 22 C 1.34772 * 120.88424 * 8.89680 * 21 2 1 23 23 O 1.21510 * 120.00257 * 355.20389 * 22 21 2 24 24 O 1.34640 * 120.00129 * 175.21287 * 22 21 2 25 25 C 1.45199 * 117.00102 * 179.97438 * 24 22 21 26 26 C 1.53003 * 109.46681 * 60.00021 * 25 24 22 27 27 C 1.53001 * 109.47287 * 179.97438 * 25 24 22 28 28 C 1.53000 * 109.47257 * 300.00207 * 25 24 22 29 29 H 1.08997 * 109.46955 * 174.13176 * 1 2 3 30 30 H 1.08998 * 109.47043 * 294.12496 * 1 2 3 31 31 H 1.08996 * 109.47305 * 54.12730 * 1 2 3 32 32 H 1.08996 * 109.49829 * 53.67336 * 4 2 1 33 33 H 1.09002 * 109.49026 * 293.58967 * 4 2 1 34 34 H 1.08997 * 109.47327 * 70.35023 * 6 5 4 35 35 H 1.09000 * 109.47604 * 310.34552 * 6 5 4 36 36 H 0.97002 * 119.99832 * 359.97438 * 9 7 6 37 37 H 1.09002 * 109.47542 * 59.99545 * 10 9 7 38 38 H 1.09002 * 109.47325 * 299.99573 * 10 9 7 39 39 H 0.97000 * 119.99789 * 0.02562 * 14 13 11 40 40 H 1.08997 * 109.49405 * 183.06096 * 19 5 4 41 41 H 1.08998 * 109.49072 * 303.12685 * 19 5 4 42 42 H 1.08997 * 109.63204 * 65.87756 * 20 19 5 43 43 H 1.09001 * 109.62659 * 186.27059 * 20 19 5 44 44 H 1.08994 * 109.47491 * 60.00049 * 26 25 24 45 45 H 1.09006 * 109.46655 * 180.02562 * 26 25 24 46 46 H 1.09000 * 109.47331 * 299.99645 * 26 25 24 47 47 H 1.08998 * 109.46535 * 60.00142 * 27 25 24 48 48 H 1.08995 * 109.47184 * 180.02562 * 27 25 24 49 49 H 1.08999 * 109.47195 * 300.00827 * 27 25 24 50 50 H 1.08994 * 109.47009 * 59.99729 * 28 25 24 51 51 H 1.09001 * 109.47049 * 180.02562 * 28 25 24 52 52 H 1.09005 * 109.46645 * 299.99704 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8961 1.0265 0.0000 4 6 2.0488 -0.7316 1.2425 5 7 3.5097 -0.8597 1.1570 6 6 4.0646 -1.4007 2.4050 7 6 5.5667 -1.2816 2.3800 8 8 6.1205 -0.7946 1.4172 9 7 6.2948 -1.7174 3.4272 10 6 7.7549 -1.6012 3.4031 11 6 8.3242 -2.1562 4.6834 12 1 7.6643 -2.5552 5.4394 13 6 9.6875 -2.1537 4.8898 14 7 10.4910 -1.6674 3.9693 15 14 10.3930 -2.8411 6.4770 16 1 11.8732 -2.7234 6.4525 17 1 9.8542 -2.0764 7.6303 18 1 10.0128 -4.2704 6.6096 19 6 3.9063 -1.6807 0.0052 20 6 3.4636 -0.9880 -1.2880 21 7 2.0240 -0.7008 -1.1950 22 6 1.1800 -1.0703 -2.1787 23 8 -0.0164 -0.9039 -2.0470 24 8 1.6625 -1.6240 -3.3071 25 6 0.6955 -1.9980 -4.3236 26 6 -0.0780 -0.7567 -4.7728 27 6 1.4255 -2.6052 -5.5233 28 6 -0.2801 -3.0255 -3.7461 29 1 -0.3633 -1.0223 -0.1051 30 1 -0.3633 0.4200 0.9379 31 1 -0.3634 0.6022 -0.8327 32 1 1.5992 -1.7231 1.2951 33 1 1.7850 -0.1644 2.1352 34 1 3.7849 -2.4496 2.5024 35 1 3.6698 -0.8392 3.2517 36 1 5.8519 -2.1073 4.1972 37 1 8.0344 -0.5520 3.3064 38 1 8.1502 -2.1620 2.5561 39 1 10.1246 -1.3101 3.1453 40 1 4.9895 -1.8017 0.0005 41 1 3.4311 -2.6591 0.0752 42 1 4.0155 -0.0563 -1.4118 43 1 3.6550 -1.6428 -2.1381 44 1 0.6169 -0.0247 -5.1843 45 1 -0.8043 -1.0375 -5.5356 46 1 -0.5981 -0.3237 -3.9184 47 1 1.9768 -3.4895 -5.2035 48 1 0.6996 -2.8856 -6.2865 49 1 2.1203 -1.8730 -5.9345 50 1 -0.8001 -2.5924 -2.8916 51 1 -1.0057 -3.3065 -4.5093 52 1 0.2711 -3.9098 -3.4260 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000741804018.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:34:43 Heat of formation + Delta-G solvation = -121.367510 kcal Electronic energy + Delta-G solvation = -31084.962399 eV Core-core repulsion = 26891.311339 eV Total energy + Delta-G solvation = -4193.651060 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.14228 -40.91699 -39.74922 -37.95734 -36.42744 -35.79490 -35.00534 -34.43755 -33.45991 -30.65569 -29.07850 -28.34771 -28.31108 -27.92325 -25.87700 -24.59491 -24.34208 -23.09107 -21.61038 -21.36823 -20.28345 -19.37571 -18.60084 -17.96547 -17.65408 -17.28198 -16.94596 -16.69785 -16.54609 -15.97564 -15.85034 -15.66141 -15.53536 -15.38982 -15.31607 -14.76208 -14.50409 -14.43442 -14.25417 -14.14974 -13.70194 -13.55478 -13.21466 -13.10526 -13.09651 -12.96397 -12.88880 -12.80364 -12.66626 -12.53551 -12.46674 -12.37750 -12.25303 -12.11999 -11.99974 -11.91573 -11.33381 -10.98815 -10.76935 -10.74416 -10.37303 -9.95570 -9.83361 -9.35671 -8.78523 -6.54132 1.09619 1.56385 1.64616 1.71724 1.73732 1.83673 2.20519 2.56613 2.73184 2.91924 3.08925 3.70119 3.75275 3.76919 3.81393 3.88708 3.95826 4.01474 4.10950 4.17039 4.27387 4.34241 4.40029 4.51316 4.59432 4.62501 4.65358 4.67426 4.76545 4.77127 4.80921 4.82666 4.86253 4.88098 4.92955 4.98339 5.08999 5.13565 5.25980 5.29043 5.34637 5.45424 5.48296 5.54631 5.55950 5.76919 5.95911 6.10029 6.32870 6.34539 6.84488 7.26053 7.27807 7.45192 8.60763 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.023285 B = 0.001997 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.212073 B =14018.439404 C =14704.586364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.161 3.839 3 H 0.083 0.917 4 C 0.051 3.949 5 N -0.536 5.536 6 C 0.051 3.949 7 C 0.496 3.504 8 O -0.581 6.581 9 N -0.707 5.707 10 C 0.256 3.744 11 C -0.629 4.629 12 H 0.076 0.924 13 C -0.034 4.034 14 N -0.930 5.930 15 Si 1.129 2.871 16 H -0.288 1.288 17 H -0.263 1.263 18 H -0.264 1.264 19 C 0.044 3.956 20 C 0.128 3.872 21 N -0.596 5.596 22 C 0.650 3.350 23 O -0.573 6.573 24 O -0.375 6.375 25 C 0.124 3.876 26 C -0.176 4.176 27 C -0.137 4.137 28 C -0.176 4.176 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.045 0.955 33 H 0.116 0.884 34 H 0.085 0.915 35 H 0.134 0.866 36 H 0.409 0.591 37 H -0.018 1.018 38 H -0.018 1.018 39 H 0.254 0.746 40 H 0.080 0.920 41 H 0.038 0.962 42 H 0.071 0.929 43 H 0.099 0.901 44 H 0.056 0.944 45 H 0.090 0.910 46 H 0.066 0.934 47 H 0.065 0.935 48 H 0.102 0.898 49 H 0.065 0.935 50 H 0.066 0.934 51 H 0.090 0.910 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.923 -1.773 -12.609 28.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.059 3.941 3 H 0.101 0.899 4 C -0.077 4.077 5 N -0.261 5.261 6 C -0.079 4.079 7 C 0.283 3.717 8 O -0.461 6.461 9 N -0.358 5.358 10 C 0.133 3.867 11 C -0.667 4.667 12 H 0.094 0.906 13 C -0.233 4.233 14 N -0.566 5.566 15 Si 0.948 3.052 16 H -0.213 1.213 17 H -0.188 1.188 18 H -0.189 1.189 19 C -0.084 4.084 20 C 0.006 3.994 21 N -0.337 5.337 22 C 0.405 3.595 23 O -0.464 6.464 24 O -0.291 6.291 25 C 0.088 3.912 26 C -0.233 4.233 27 C -0.194 4.194 28 C -0.233 4.233 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.134 0.866 34 H 0.103 0.897 35 H 0.152 0.848 36 H 0.245 0.755 37 H 0.000 1.000 38 H 0.000 1.000 39 H 0.063 0.937 40 H 0.098 0.902 41 H 0.056 0.944 42 H 0.089 0.911 43 H 0.117 0.883 44 H 0.075 0.925 45 H 0.108 0.892 46 H 0.085 0.915 47 H 0.084 0.916 48 H 0.121 0.879 49 H 0.084 0.916 50 H 0.085 0.915 51 H 0.108 0.892 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -24.325 -1.216 -12.605 27.423 hybrid contribution -1.309 -0.420 -0.759 1.570 sum -25.633 -1.637 -13.364 28.954 Atomic orbital electron populations 1.22034 0.91163 1.03124 1.01746 1.21487 0.95972 0.95356 0.81259 0.89929 1.22672 0.85407 1.00534 0.99101 1.61494 1.10964 1.51635 1.02033 1.21933 0.89358 1.01856 0.94782 1.21362 0.90995 0.77254 0.82123 1.90615 1.74263 1.46092 1.35105 1.46048 1.07570 1.61786 1.20362 1.18614 0.77936 0.93852 0.96347 1.22446 0.95536 1.45216 1.03495 0.90553 1.27632 0.94483 0.94736 1.06424 1.70909 1.38762 1.38597 1.08345 0.82798 0.75285 0.76780 0.70309 1.21334 1.18817 1.18855 1.22497 1.01650 0.93920 0.90383 1.21674 0.79108 1.01074 0.97589 1.47265 1.07748 1.60004 1.18702 1.18181 0.84044 0.76903 0.80337 1.90935 1.14335 1.60343 1.80809 1.86328 1.42412 1.74159 1.26159 1.22384 0.87813 0.95337 0.85652 1.22444 1.00928 0.97024 1.02945 1.21886 1.01530 1.01164 0.94846 1.22440 0.99642 0.98097 1.03140 0.92374 0.90967 0.91949 0.93675 0.86616 0.89739 0.84792 0.75543 1.00014 0.99969 0.93687 0.90157 0.94359 0.91095 0.88317 0.92464 0.89169 0.91507 0.91616 0.87900 0.91554 0.91510 0.89171 0.92549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.27 7.62 71.98 0.55 -1.72 16 2 C 0.16 3.24 3.64 44.96 0.16 3.40 16 3 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 4 C 0.05 0.94 4.92 86.38 0.42 1.36 16 5 N -0.54 -13.41 4.36 -899.84 -3.93 -17.34 16 6 C 0.05 1.25 5.45 85.56 0.47 1.72 16 7 C 0.50 18.55 7.49 87.66 0.66 19.21 16 8 O -0.58 -26.95 14.36 -3.04 -0.04 -27.00 16 9 N -0.71 -28.62 5.55 -466.77 -2.59 -31.21 16 10 C 0.26 13.68 4.74 85.64 0.41 14.08 16 11 C -0.63 -34.06 9.28 25.60 0.24 -33.82 16 12 H 0.08 3.76 7.60 -2.91 -0.02 3.74 16 13 C -0.03 -1.92 5.46 84.65 0.46 -1.45 16 14 N -0.93 -57.43 13.65 21.45 0.29 -57.14 16 15 Si 1.13 47.45 29.90 68.60 2.05 49.50 16 16 H -0.29 -12.37 7.11 99.48 0.71 -11.67 16 17 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 18 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 19 C 0.04 1.17 5.26 86.38 0.45 1.63 16 20 C 0.13 3.11 6.59 86.35 0.57 3.68 16 21 N -0.60 -13.83 3.01 -924.29 -2.78 -16.61 16 22 C 0.65 15.78 7.64 129.79 0.99 16.77 16 23 O -0.57 -14.51 7.38 19.81 0.15 -14.37 16 24 O -0.38 -8.52 8.60 -55.50 -0.48 -9.00 16 25 C 0.12 2.14 1.13 -10.79 -0.01 2.13 16 26 C -0.18 -2.88 8.37 71.98 0.60 -2.27 16 27 C -0.14 -1.67 8.85 71.98 0.64 -1.03 16 28 C -0.18 -2.88 8.37 71.98 0.60 -2.28 16 29 H 0.06 1.25 6.78 -2.39 -0.02 1.23 16 30 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.06 1.35 6.76 -2.39 -0.02 1.33 16 32 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.12 1.59 7.99 -2.39 -0.02 1.58 16 34 H 0.08 1.72 8.12 -2.39 -0.02 1.70 16 35 H 0.13 2.48 7.96 -2.39 -0.02 2.46 16 36 H 0.41 13.62 8.32 -92.71 -0.77 12.85 16 37 H -0.02 -1.07 8.01 -2.39 -0.02 -1.09 16 38 H -0.02 -1.04 8.01 -2.39 -0.02 -1.06 16 39 H 0.25 16.25 7.22 -92.71 -0.67 15.58 16 40 H 0.08 2.67 5.80 -2.39 -0.01 2.66 16 41 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.10 2.24 7.04 -2.39 -0.02 2.23 16 44 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 46 H 0.07 1.40 5.88 -2.39 -0.01 1.39 16 47 H 0.06 0.82 8.14 -2.39 -0.02 0.81 16 48 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 49 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 50 H 0.07 1.40 5.88 -2.39 -0.01 1.39 16 51 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 52 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 Total: -1.00 -73.84 402.03 0.12 -73.72 By element: Atomic # 1 Polarization: 27.82 SS G_CDS: 0.24 Total: 28.05 kcal Atomic # 6 Polarization: 14.18 SS G_CDS: 7.21 Total: 21.39 kcal Atomic # 7 Polarization: -113.29 SS G_CDS: -9.01 Total: -122.30 kcal Atomic # 8 Polarization: -49.99 SS G_CDS: -0.37 Total: -50.36 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 2.05 Total: 49.50 kcal Total: -73.84 0.12 -73.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741804018.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.650 kcal (2) G-P(sol) polarization free energy of solvation -73.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds