Wall clock time and date at job start Wed Apr 1 2020 01:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08996 * 110.35326 * 2 1 4 4 C 1.53992 * 110.30582 * 237.85753 * 2 1 3 5 5 N 1.47903 * 107.05718 * 242.31072 * 4 2 1 6 6 C 1.46903 * 111.00082 * 214.15804 * 5 4 2 7 7 C 1.50702 * 109.46976 * 187.27321 * 6 5 4 8 8 O 1.21279 * 120.00227 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99418 * 180.02562 * 7 6 5 10 10 C 1.46506 * 119.99759 * 179.97438 * 9 7 6 11 11 C 1.50697 * 109.47201 * 179.97438 * 10 9 7 12 12 H 1.08000 * 120.00195 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99986 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99925 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00161 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.46840 * 90.00178 * 15 13 11 17 17 H 1.48500 * 109.47172 * 210.00456 * 15 13 11 18 18 H 1.48504 * 109.46985 * 330.00368 * 15 13 11 19 19 C 1.48530 * 105.82054 * 334.67182 * 5 4 2 20 20 C 1.54603 * 110.30775 * 122.14271 * 2 1 3 21 21 H 1.09003 * 110.87077 * 22.44286 * 20 2 1 22 22 N 1.46497 * 110.72207 * 259.22970 * 20 2 1 23 23 C 1.34777 * 119.99703 * 160.04235 * 22 20 2 24 24 O 1.21507 * 120.00068 * 0.02562 * 23 22 20 25 25 O 1.34644 * 119.99419 * 179.97438 * 23 22 20 26 26 C 1.45206 * 116.99182 * 180.02562 * 25 23 22 27 27 C 1.52997 * 109.47226 * 60.00595 * 26 25 23 28 28 C 1.52992 * 109.47178 * 300.00057 * 26 25 23 29 29 C 1.53006 * 109.46497 * 180.02562 * 26 25 23 30 30 H 1.09000 * 109.46907 * 297.85807 * 1 2 3 31 31 H 1.08997 * 109.46660 * 57.85463 * 1 2 3 32 32 H 1.09000 * 109.47096 * 177.86045 * 1 2 3 33 33 H 1.08993 * 109.91687 * 122.96076 * 4 2 1 34 34 H 1.09002 * 109.91815 * 1.66205 * 4 2 1 35 35 H 1.09000 * 109.46984 * 307.27023 * 6 5 4 36 36 H 1.08994 * 109.46998 * 67.26909 * 6 5 4 37 37 H 0.97001 * 120.00659 * 359.97438 * 9 7 6 38 38 H 1.09000 * 109.47061 * 299.99626 * 10 9 7 39 39 H 1.08999 * 109.46810 * 59.99427 * 10 9 7 40 40 H 0.96998 * 119.99583 * 179.97438 * 14 13 11 41 41 H 1.09004 * 110.66690 * 280.77208 * 19 5 4 42 42 H 1.08995 * 110.67180 * 157.64334 * 19 5 4 43 43 H 0.97000 * 119.99731 * 340.04848 * 22 20 2 44 44 H 1.09002 * 109.47153 * 299.99431 * 27 26 25 45 45 H 1.09001 * 109.46832 * 179.97438 * 27 26 25 46 46 H 1.09004 * 109.47261 * 59.99603 * 27 26 25 47 47 H 1.09001 * 109.47066 * 180.02562 * 28 26 25 48 48 H 1.08996 * 109.47747 * 300.00217 * 28 26 25 49 49 H 1.09002 * 109.47103 * 60.00629 * 28 26 25 50 50 H 1.08993 * 109.46955 * 300.00264 * 29 26 25 51 51 H 1.09000 * 109.47050 * 60.00093 * 29 26 25 52 52 H 1.09001 * 109.47002 * 179.97438 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9092 1.0219 0.0000 4 6 2.0645 -0.7684 -1.2229 5 7 2.8312 -1.9237 -0.7082 6 6 3.9751 -2.2264 -1.5788 7 6 4.6246 -3.5090 -1.1271 8 8 4.1788 -4.1114 -0.1736 9 7 5.7014 -3.9861 -1.7823 10 6 6.3332 -5.2328 -1.3429 11 6 7.5065 -5.5433 -2.2361 12 1 7.7569 -4.8784 -3.0495 13 6 8.2611 -6.6758 -2.0144 14 7 7.9565 -7.4852 -1.0236 15 14 9.7159 -7.0604 -3.1211 16 1 10.9417 -6.4356 -2.5623 17 1 9.9022 -8.5315 -3.2005 18 1 9.4604 -6.5197 -4.4804 19 6 3.2855 -1.5349 0.6515 20 6 2.0667 -0.7714 1.2277 21 1 1.3186 -1.4682 1.6058 22 7 2.4867 0.1570 2.2802 23 6 2.6009 -0.2736 3.5523 24 8 2.3560 -1.4318 3.8260 25 8 2.9875 0.5796 4.5195 26 6 3.0895 0.0466 5.8663 27 6 4.1125 -1.0908 5.8886 28 6 1.7251 -0.4857 6.3088 29 6 3.5379 1.1552 6.8208 30 1 -0.3633 0.4802 0.9086 31 1 -0.3632 0.5468 -0.8701 32 1 -0.3633 -1.0270 -0.0384 33 1 2.7162 -0.1227 -1.8113 34 1 1.2326 -1.1176 -1.8346 35 1 3.6301 -2.3362 -2.6069 36 1 4.6990 -1.4134 -1.5235 37 1 6.0582 -3.5041 -2.5448 38 1 6.6780 -5.1226 -0.3148 39 1 5.6095 -6.0460 -1.3983 40 1 8.4871 -8.2821 -0.8678 41 1 4.1564 -0.8819 0.5941 42 1 3.5046 -2.4183 1.2512 43 1 2.6825 1.0815 2.0616 44 1 3.7927 -1.8805 5.2086 45 1 4.1893 -1.4906 6.8997 46 1 5.0846 -0.7115 5.5733 47 1 1.8016 -0.8855 7.3200 48 1 0.9963 0.3245 6.2930 49 1 1.4053 -1.2754 5.6288 50 1 4.5097 1.5349 6.5057 51 1 2.8087 1.9653 6.8048 52 1 3.6140 0.7553 7.8319 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000769889959.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:29:08 Heat of formation + Delta-G solvation = -117.838425 kcal Electronic energy + Delta-G solvation = -30649.689569 eV Core-core repulsion = 26456.191542 eV Total energy + Delta-G solvation = -4193.498027 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.97356 -39.77089 -38.37691 -37.09838 -34.81980 -34.19449 -33.95534 -32.74641 -32.28020 -29.28387 -27.93873 -27.63663 -27.53570 -26.63440 -24.97870 -23.05276 -22.18447 -21.15791 -20.85238 -19.93816 -19.59933 -18.25325 -17.29118 -16.86964 -16.25176 -16.13628 -15.90361 -15.16278 -15.10892 -14.90503 -14.62531 -14.49254 -14.36455 -14.04713 -13.72957 -13.66037 -13.59596 -12.99426 -12.80540 -12.72945 -12.49005 -12.32779 -12.12118 -12.07605 -12.01389 -11.94101 -11.88906 -11.72525 -11.51527 -11.33781 -11.27579 -11.19129 -10.96592 -10.87815 -10.78106 -10.52382 -10.29167 -10.13663 -9.37135 -9.30787 -8.99290 -8.70848 -8.34439 -7.81902 -6.14318 -4.21296 1.98299 2.74713 3.25073 3.30985 3.33488 3.43807 3.66357 3.93921 4.28425 4.31979 4.43831 4.47838 4.50733 4.55264 4.63068 4.69840 5.06394 5.16656 5.19915 5.21457 5.23578 5.26575 5.32489 5.37061 5.38846 5.45720 5.47288 5.55921 5.58900 5.64171 5.67796 5.68178 5.75531 5.76817 5.82616 5.96087 6.08770 6.14833 6.23715 6.29515 6.39691 6.84872 6.89364 7.26571 7.36054 7.49491 7.56156 7.70335 8.00106 8.28252 8.67544 8.82270 9.17611 9.45521 10.95888 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010939 B = 0.002414 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2559.034299 B =11595.489268 C =13592.659639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.107 4.107 3 H 0.081 0.919 4 C 0.039 3.961 5 N -0.492 5.492 6 C 0.027 3.973 7 C 0.497 3.503 8 O -0.535 6.535 9 N -0.716 5.716 10 C 0.252 3.748 11 C -0.543 4.543 12 H 0.062 0.938 13 C 0.063 3.937 14 N -0.885 5.885 15 Si 0.903 3.097 16 H -0.279 1.279 17 H -0.284 1.284 18 H -0.273 1.273 19 C 0.027 3.973 20 C 0.163 3.837 21 H 0.109 0.891 22 N -0.704 5.704 23 C 0.649 3.351 24 O -0.556 6.556 25 O -0.368 6.368 26 C 0.137 3.863 27 C -0.186 4.186 28 C -0.183 4.183 29 C -0.140 4.140 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.048 0.952 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.059 0.941 37 H 0.389 0.611 38 H 0.025 0.975 39 H 0.027 0.973 40 H 0.266 0.734 41 H 0.043 0.957 42 H 0.107 0.893 43 H 0.403 0.597 44 H 0.091 0.909 45 H 0.070 0.930 46 H 0.060 0.940 47 H 0.070 0.930 48 H 0.057 0.943 49 H 0.089 0.911 50 H 0.066 0.934 51 H 0.065 0.935 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.370 22.862 7.964 27.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.126 4.126 3 H 0.099 0.901 4 C -0.089 4.089 5 N -0.216 5.216 6 C -0.104 4.104 7 C 0.281 3.719 8 O -0.412 6.412 9 N -0.366 5.366 10 C 0.131 3.869 11 C -0.581 4.581 12 H 0.080 0.920 13 C -0.141 4.141 14 N -0.522 5.522 15 Si 0.731 3.269 16 H -0.205 1.205 17 H -0.210 1.210 18 H -0.198 1.198 19 C -0.102 4.102 20 C 0.059 3.941 21 H 0.127 0.873 22 N -0.363 5.363 23 C 0.402 3.598 24 O -0.444 6.444 25 O -0.283 6.283 26 C 0.100 3.900 27 C -0.243 4.243 28 C -0.240 4.240 29 C -0.197 4.197 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.105 0.895 35 H 0.119 0.881 36 H 0.077 0.923 37 H 0.221 0.779 38 H 0.043 0.957 39 H 0.045 0.955 40 H 0.075 0.925 41 H 0.062 0.938 42 H 0.125 0.875 43 H 0.238 0.762 44 H 0.109 0.891 45 H 0.089 0.911 46 H 0.079 0.921 47 H 0.089 0.911 48 H 0.077 0.923 49 H 0.108 0.892 50 H 0.085 0.915 51 H 0.084 0.916 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -14.050 21.156 8.996 26.942 hybrid contribution 1.780 1.071 -1.114 2.357 sum -12.270 22.227 7.882 26.584 Atomic orbital electron populations 1.21834 0.93423 1.02854 1.01801 1.22252 0.97273 0.99136 0.93972 0.90057 1.23008 0.98493 0.91189 0.96204 1.64477 1.20534 1.34913 1.01689 1.22235 0.92878 0.96847 0.98471 1.20242 0.81136 0.86435 0.84098 1.90670 1.63060 1.59728 1.27716 1.46441 1.29641 1.27594 1.32925 1.19072 0.92138 0.79949 0.95742 1.21227 1.13035 1.08788 1.15072 0.91955 1.24960 0.97834 0.95783 0.95493 1.69981 1.39545 1.13369 1.29334 0.86422 0.82258 0.77621 0.80636 1.20504 1.20993 1.19766 1.23741 0.95278 1.00455 0.90711 1.21997 0.96881 0.90156 0.85086 0.87297 1.44729 1.72544 1.14490 1.04553 1.18100 0.76688 0.83340 0.81709 1.90960 1.54338 1.17254 1.81836 1.86279 1.81401 1.42319 1.18303 1.22071 0.96532 0.94358 0.77029 1.22535 0.98423 0.99332 1.04010 1.22516 0.95652 1.02832 1.03048 1.21858 1.02295 0.97735 0.97823 0.92519 0.92183 0.91545 0.93356 0.89481 0.88140 0.92277 0.77922 0.95681 0.95535 0.92454 0.93835 0.87460 0.76232 0.89055 0.91102 0.92102 0.91126 0.92347 0.89228 0.91479 0.91620 0.90128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 8.89 37.16 0.33 -0.70 16 2 C -0.11 -0.89 3.32 -89.26 -0.30 -1.18 16 3 H 0.08 0.53 7.72 -51.93 -0.40 0.13 16 4 C 0.04 0.38 6.34 -2.75 -0.02 0.36 16 5 N -0.49 -6.89 4.96 -231.90 -1.15 -8.04 16 6 C 0.03 0.39 5.18 -4.97 -0.03 0.37 16 7 C 0.50 10.07 7.63 -10.98 -0.08 9.99 16 8 O -0.53 -13.21 14.84 5.56 0.08 -13.13 16 9 N -0.72 -15.24 5.55 -61.47 -0.34 -15.58 16 10 C 0.25 6.79 5.43 -5.19 -0.03 6.76 16 11 C -0.54 -14.89 9.28 -34.44 -0.32 -15.21 16 12 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 13 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 14 N -0.88 -26.46 13.29 55.43 0.74 -25.72 16 15 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 19 C 0.03 0.39 5.54 -1.90 -0.01 0.38 16 20 C 0.16 1.86 2.89 -66.07 -0.19 1.67 16 21 H 0.11 1.47 7.42 -51.93 -0.39 1.08 16 22 N -0.70 -7.31 5.21 -56.91 -0.30 -7.60 16 23 C 0.65 8.39 8.05 54.06 0.44 8.83 16 24 O -0.56 -8.87 11.61 -19.28 -0.22 -9.10 16 25 O -0.37 -4.24 9.94 -40.33 -0.40 -4.64 16 26 C 0.14 1.38 1.13 -90.62 -0.10 1.28 16 27 C -0.19 -2.05 8.37 37.16 0.31 -1.74 16 28 C -0.18 -1.78 8.37 37.15 0.31 -1.47 16 29 C -0.14 -1.00 8.85 37.16 0.33 -0.67 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.05 0.40 7.77 -51.93 -0.40 0.00 16 34 H 0.09 0.79 7.68 -51.93 -0.40 0.39 16 35 H 0.10 1.21 8.11 -51.93 -0.42 0.79 16 36 H 0.06 0.73 7.90 -51.93 -0.41 0.32 16 37 H 0.39 6.99 8.32 -40.82 -0.34 6.65 16 38 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.04 0.60 7.85 -51.93 -0.41 0.19 16 42 H 0.11 2.04 6.91 -51.93 -0.36 1.68 16 43 H 0.40 3.07 8.44 -40.82 -0.34 2.73 16 44 H 0.09 1.29 5.88 -51.93 -0.31 0.98 16 45 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.09 1.11 5.88 -51.93 -0.31 0.80 16 50 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 51 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 52 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 414.49 15.07 6.25 6.25 Total: -1.00 -34.72 414.49 -8.91 -43.63 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -9.09 Total: 7.61 kcal Atomic # 6 Polarization: 9.79 SS G_CDS: 0.54 Total: 10.34 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: -1.05 Total: -56.94 kcal Atomic # 8 Polarization: -26.33 SS G_CDS: -0.54 Total: -26.87 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -34.72 -8.91 -43.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769889959.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.211 kcal (2) G-P(sol) polarization free energy of solvation -34.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds