Wall clock time and date at job start Wed Apr 1 2020 01:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08996 * 110.35326 * 2 1 4 4 C 1.53992 * 110.30582 * 237.85753 * 2 1 3 5 5 N 1.47903 * 107.05718 * 242.31072 * 4 2 1 6 6 C 1.46903 * 111.00082 * 214.15804 * 5 4 2 7 7 C 1.50702 * 109.46976 * 187.27321 * 6 5 4 8 8 O 1.21279 * 120.00227 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99418 * 180.02562 * 7 6 5 10 10 C 1.46506 * 119.99759 * 179.97438 * 9 7 6 11 11 C 1.50697 * 109.47201 * 179.97438 * 10 9 7 12 12 H 1.08000 * 120.00195 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99986 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99925 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00161 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.46840 * 90.00178 * 15 13 11 17 17 H 1.48500 * 109.47172 * 210.00456 * 15 13 11 18 18 H 1.48504 * 109.46985 * 330.00368 * 15 13 11 19 19 C 1.48530 * 105.82054 * 334.67182 * 5 4 2 20 20 C 1.54603 * 110.30775 * 122.14271 * 2 1 3 21 21 H 1.09003 * 110.87077 * 22.44286 * 20 2 1 22 22 N 1.46497 * 110.72207 * 259.22970 * 20 2 1 23 23 C 1.34777 * 119.99703 * 160.04235 * 22 20 2 24 24 O 1.21507 * 120.00068 * 0.02562 * 23 22 20 25 25 O 1.34644 * 119.99419 * 179.97438 * 23 22 20 26 26 C 1.45206 * 116.99182 * 180.02562 * 25 23 22 27 27 C 1.52997 * 109.47226 * 60.00595 * 26 25 23 28 28 C 1.52992 * 109.47178 * 300.00057 * 26 25 23 29 29 C 1.53006 * 109.46497 * 180.02562 * 26 25 23 30 30 H 1.09000 * 109.46907 * 297.85807 * 1 2 3 31 31 H 1.08997 * 109.46660 * 57.85463 * 1 2 3 32 32 H 1.09000 * 109.47096 * 177.86045 * 1 2 3 33 33 H 1.08993 * 109.91687 * 122.96076 * 4 2 1 34 34 H 1.09002 * 109.91815 * 1.66205 * 4 2 1 35 35 H 1.09000 * 109.46984 * 307.27023 * 6 5 4 36 36 H 1.08994 * 109.46998 * 67.26909 * 6 5 4 37 37 H 0.97001 * 120.00659 * 359.97438 * 9 7 6 38 38 H 1.09000 * 109.47061 * 299.99626 * 10 9 7 39 39 H 1.08999 * 109.46810 * 59.99427 * 10 9 7 40 40 H 0.96998 * 119.99583 * 179.97438 * 14 13 11 41 41 H 1.09004 * 110.66690 * 280.77208 * 19 5 4 42 42 H 1.08995 * 110.67180 * 157.64334 * 19 5 4 43 43 H 0.97000 * 119.99731 * 340.04848 * 22 20 2 44 44 H 1.09002 * 109.47153 * 299.99431 * 27 26 25 45 45 H 1.09001 * 109.46832 * 179.97438 * 27 26 25 46 46 H 1.09004 * 109.47261 * 59.99603 * 27 26 25 47 47 H 1.09001 * 109.47066 * 180.02562 * 28 26 25 48 48 H 1.08996 * 109.47747 * 300.00217 * 28 26 25 49 49 H 1.09002 * 109.47103 * 60.00629 * 28 26 25 50 50 H 1.08993 * 109.46955 * 300.00264 * 29 26 25 51 51 H 1.09000 * 109.47050 * 60.00093 * 29 26 25 52 52 H 1.09001 * 109.47002 * 179.97438 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9092 1.0219 0.0000 4 6 2.0645 -0.7684 -1.2229 5 7 2.8312 -1.9237 -0.7082 6 6 3.9751 -2.2264 -1.5788 7 6 4.6246 -3.5090 -1.1271 8 8 4.1788 -4.1114 -0.1736 9 7 5.7014 -3.9861 -1.7823 10 6 6.3332 -5.2328 -1.3429 11 6 7.5065 -5.5433 -2.2361 12 1 7.7569 -4.8784 -3.0495 13 6 8.2611 -6.6758 -2.0144 14 7 7.9565 -7.4852 -1.0236 15 14 9.7159 -7.0604 -3.1211 16 1 10.9417 -6.4356 -2.5623 17 1 9.9022 -8.5315 -3.2005 18 1 9.4604 -6.5197 -4.4804 19 6 3.2855 -1.5349 0.6515 20 6 2.0667 -0.7714 1.2277 21 1 1.3186 -1.4682 1.6058 22 7 2.4867 0.1570 2.2802 23 6 2.6009 -0.2736 3.5523 24 8 2.3560 -1.4318 3.8260 25 8 2.9875 0.5796 4.5195 26 6 3.0895 0.0466 5.8663 27 6 4.1125 -1.0908 5.8886 28 6 1.7251 -0.4857 6.3088 29 6 3.5379 1.1552 6.8208 30 1 -0.3633 0.4802 0.9086 31 1 -0.3632 0.5468 -0.8701 32 1 -0.3633 -1.0270 -0.0384 33 1 2.7162 -0.1227 -1.8113 34 1 1.2326 -1.1176 -1.8346 35 1 3.6301 -2.3362 -2.6069 36 1 4.6990 -1.4134 -1.5235 37 1 6.0582 -3.5041 -2.5448 38 1 6.6780 -5.1226 -0.3148 39 1 5.6095 -6.0460 -1.3983 40 1 8.4871 -8.2821 -0.8678 41 1 4.1564 -0.8819 0.5941 42 1 3.5046 -2.4183 1.2512 43 1 2.6825 1.0815 2.0616 44 1 3.7927 -1.8805 5.2086 45 1 4.1893 -1.4906 6.8997 46 1 5.0846 -0.7115 5.5733 47 1 1.8016 -0.8855 7.3200 48 1 0.9963 0.3245 6.2930 49 1 1.4053 -1.2754 5.6288 50 1 4.5097 1.5349 6.5057 51 1 2.8087 1.9653 6.8048 52 1 3.6140 0.7553 7.8319 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000769889959.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:29:07 Heat of formation + Delta-G solvation = -146.203549 kcal Electronic energy + Delta-G solvation = -30650.919573 eV Core-core repulsion = 26456.191542 eV Total energy + Delta-G solvation = -4194.728031 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.94530 -40.95606 -39.81130 -38.09408 -36.18057 -35.79151 -34.93499 -34.34902 -33.58670 -30.53909 -29.43406 -28.39856 -28.30277 -27.98647 -26.03065 -24.63608 -23.55502 -22.21252 -21.74179 -21.33152 -20.77464 -19.23530 -18.93951 -17.96272 -17.58545 -17.24770 -17.21392 -16.79136 -16.51425 -16.16970 -15.96133 -15.57633 -15.41717 -15.02023 -14.96709 -14.72754 -14.47319 -14.31560 -14.11190 -13.96328 -13.78988 -13.36080 -13.23094 -13.20338 -12.96152 -12.92855 -12.88463 -12.87955 -12.74344 -12.64082 -12.41514 -12.36909 -12.23208 -12.12726 -11.91745 -11.70833 -11.49635 -11.41644 -11.14743 -10.81461 -10.67592 -10.27715 -9.82413 -9.38754 -8.30171 -6.47513 1.08280 1.41652 1.44750 1.56049 1.72156 1.81013 2.27237 2.46831 2.93824 3.04468 3.31090 3.45338 3.54693 3.73346 3.77728 3.90013 3.92703 4.01327 4.11028 4.25973 4.32435 4.40610 4.49258 4.54984 4.58518 4.63495 4.69604 4.73835 4.80949 4.85149 4.87003 4.92263 5.00757 5.02555 5.09614 5.10365 5.14147 5.22086 5.25320 5.26148 5.34187 5.43012 5.48376 5.55354 5.68148 5.80476 5.84221 5.97829 6.37439 6.64301 6.95464 7.22580 7.33288 7.55191 8.82300 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010939 B = 0.002414 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2559.034299 B =11595.489268 C =13592.659639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.093 4.093 3 H 0.114 0.886 4 C 0.040 3.960 5 N -0.520 5.520 6 C 0.043 3.957 7 C 0.489 3.511 8 O -0.588 6.588 9 N -0.710 5.710 10 C 0.269 3.731 11 C -0.555 4.555 12 H 0.086 0.914 13 C 0.000 4.000 14 N -0.933 5.933 15 Si 0.987 3.013 16 H -0.270 1.270 17 H -0.284 1.284 18 H -0.253 1.253 19 C 0.031 3.969 20 C 0.170 3.830 21 H 0.079 0.921 22 N -0.688 5.688 23 C 0.642 3.358 24 O -0.594 6.594 25 O -0.365 6.365 26 C 0.127 3.873 27 C -0.184 4.184 28 C -0.179 4.179 29 C -0.133 4.133 30 H 0.058 0.942 31 H 0.083 0.917 32 H 0.048 0.952 33 H 0.078 0.922 34 H 0.097 0.903 35 H 0.135 0.865 36 H 0.091 0.909 37 H 0.409 0.591 38 H -0.019 1.019 39 H -0.017 1.017 40 H 0.268 0.732 41 H 0.051 0.949 42 H 0.046 0.954 43 H 0.420 0.580 44 H 0.052 0.948 45 H 0.090 0.910 46 H 0.058 0.942 47 H 0.089 0.911 48 H 0.069 0.931 49 H 0.056 0.944 50 H 0.068 0.932 51 H 0.076 0.924 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.033 26.661 5.878 30.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.112 4.112 3 H 0.132 0.868 4 C -0.087 4.087 5 N -0.245 5.245 6 C -0.088 4.088 7 C 0.276 3.724 8 O -0.469 6.469 9 N -0.361 5.361 10 C 0.146 3.854 11 C -0.592 4.592 12 H 0.104 0.896 13 C -0.199 4.199 14 N -0.572 5.572 15 Si 0.810 3.190 16 H -0.196 1.196 17 H -0.210 1.210 18 H -0.176 1.176 19 C -0.098 4.098 20 C 0.065 3.935 21 H 0.097 0.903 22 N -0.348 5.348 23 C 0.395 3.605 24 O -0.484 6.484 25 O -0.279 6.279 26 C 0.090 3.910 27 C -0.241 4.241 28 C -0.236 4.236 29 C -0.190 4.190 30 H 0.077 0.923 31 H 0.102 0.898 32 H 0.067 0.933 33 H 0.096 0.904 34 H 0.115 0.885 35 H 0.153 0.847 36 H 0.109 0.891 37 H 0.245 0.755 38 H -0.001 1.001 39 H 0.001 0.999 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.258 0.742 44 H 0.071 0.929 45 H 0.109 0.891 46 H 0.078 0.922 47 H 0.107 0.893 48 H 0.088 0.912 49 H 0.075 0.925 50 H 0.087 0.913 51 H 0.095 0.905 52 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -13.727 25.049 6.866 29.377 hybrid contribution 1.617 -0.149 -0.373 1.666 sum -12.110 24.900 6.494 28.439 Atomic orbital electron populations 1.21818 0.92513 1.02224 1.03047 1.22259 0.97877 0.99947 0.91102 0.86783 1.23149 0.98610 0.90067 0.96838 1.64341 1.20744 1.37965 1.01424 1.22179 0.93506 0.93518 0.99644 1.21492 0.80131 0.87980 0.82767 1.90661 1.64351 1.61786 1.30054 1.46169 1.30100 1.26073 1.33805 1.18473 0.91648 0.81337 0.93949 1.21627 1.12800 1.09374 1.15434 0.89557 1.26137 1.01307 0.95443 0.97014 1.70161 1.41307 1.14108 1.31625 0.85120 0.77686 0.77247 0.78932 1.19576 1.21010 1.17632 1.23491 0.96986 0.98337 0.91008 1.21807 0.94888 0.90450 0.86366 0.90274 1.44598 1.71658 1.15100 1.03470 1.18394 0.76425 0.83046 0.82588 1.90961 1.55869 1.19025 1.82539 1.86294 1.81034 1.41849 1.18753 1.22394 0.96384 0.95273 0.76925 1.22503 0.98605 0.98866 1.04173 1.22461 0.95718 1.02213 1.03209 1.21872 1.02537 0.96860 0.97726 0.92297 0.89774 0.93282 0.90382 0.88487 0.84686 0.89092 0.75545 1.00114 0.99869 0.92281 0.93050 0.93544 0.74192 0.92860 0.89123 0.92246 0.89250 0.91194 0.92483 0.91274 0.90503 0.88112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 8.89 71.99 0.64 -1.04 16 2 C -0.09 -1.28 3.32 -9.91 -0.03 -1.31 16 3 H 0.11 0.92 7.72 -2.39 -0.02 0.90 16 4 C 0.04 0.64 6.34 86.45 0.55 1.19 16 5 N -0.52 -14.15 4.96 -887.59 -4.40 -18.55 16 6 C 0.04 1.13 5.18 85.56 0.44 1.58 16 7 C 0.49 20.41 7.63 87.66 0.67 21.08 16 8 O -0.59 -31.33 14.84 -3.03 -0.04 -31.38 16 9 N -0.71 -30.83 5.55 -466.78 -2.59 -33.42 16 10 C 0.27 15.35 5.43 85.63 0.46 15.81 16 11 C -0.55 -30.79 9.28 25.60 0.24 -30.55 16 12 H 0.09 4.27 7.60 -2.91 -0.02 4.25 16 13 C 0.00 0.02 5.46 84.65 0.46 0.48 16 14 N -0.93 -57.96 13.29 21.45 0.28 -57.67 16 15 Si 0.99 42.93 29.54 68.60 2.03 44.96 16 16 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 17 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 18 H -0.25 -10.11 7.11 99.48 0.71 -9.40 16 19 C 0.03 0.94 5.54 86.65 0.48 1.42 16 20 C 0.17 3.92 2.89 46.20 0.13 4.05 16 21 H 0.08 2.32 7.42 -2.39 -0.02 2.30 16 22 N -0.69 -14.14 5.21 -564.37 -2.94 -17.08 16 23 C 0.64 17.41 8.05 129.79 1.05 18.46 16 24 O -0.59 -20.85 11.61 19.82 0.23 -20.62 16 25 O -0.36 -8.42 9.94 -55.53 -0.55 -8.98 16 26 C 0.13 2.54 1.13 -10.79 -0.01 2.53 16 27 C -0.18 -4.29 8.37 71.98 0.60 -3.68 16 28 C -0.18 -3.50 8.37 71.98 0.60 -2.90 16 29 C -0.13 -1.64 8.85 71.98 0.64 -1.01 16 30 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.08 0.85 7.77 -2.39 -0.02 0.83 16 34 H 0.10 1.40 7.68 -2.39 -0.02 1.38 16 35 H 0.14 2.73 8.11 -2.39 -0.02 2.71 16 36 H 0.09 1.91 7.90 -2.39 -0.02 1.89 16 37 H 0.41 14.22 8.32 -92.71 -0.77 13.45 16 38 H -0.02 -1.24 8.14 -2.39 -0.02 -1.26 16 39 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 40 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 41 H 0.05 1.41 7.85 -2.38 -0.02 1.39 16 42 H 0.05 1.96 6.91 -2.39 -0.02 1.95 16 43 H 0.42 5.60 8.44 -92.71 -0.78 4.81 16 44 H 0.05 1.67 5.88 -2.39 -0.01 1.65 16 45 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 46 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 47 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 48 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 49 H 0.06 1.52 5.88 -2.39 -0.01 1.51 16 50 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 51 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 52 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -85.12 414.49 -1.70 -86.82 By element: Atomic # 1 Polarization: 30.46 SS G_CDS: -0.63 Total: 29.83 kcal Atomic # 6 Polarization: 19.17 SS G_CDS: 6.92 Total: 26.09 kcal Atomic # 7 Polarization: -117.08 SS G_CDS: -9.64 Total: -126.72 kcal Atomic # 8 Polarization: -60.61 SS G_CDS: -0.37 Total: -60.98 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -85.12 -1.70 -86.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769889959.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.383 kcal (2) G-P(sol) polarization free energy of solvation -85.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds