Wall clock time and date at job start Wed Apr 1 2020 01:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.74406 * 2 1 4 4 C 1.52923 * 109.52927 * 239.80596 * 2 1 3 5 5 N 1.46963 * 108.69321 * 190.95492 * 4 2 1 6 6 C 1.34783 * 120.59326 * 235.12517 * 5 4 2 7 7 O 1.21506 * 119.99903 * 174.87081 * 6 5 4 8 8 O 1.34633 * 119.99778 * 354.86540 * 6 5 4 9 9 C 1.45203 * 116.99818 * 180.02562 * 8 6 5 10 10 C 1.53003 * 109.47141 * 60.00054 * 9 8 6 11 11 C 1.52995 * 109.47394 * 179.97438 * 9 8 6 12 12 C 1.53001 * 109.47230 * 300.00390 * 9 8 6 13 13 C 1.46960 * 118.81326 * 55.09585 * 5 4 2 14 14 H 1.09005 * 109.74974 * 64.60483 * 13 5 4 15 15 C 1.52995 * 109.61118 * 185.03123 * 13 5 4 16 16 C 1.53370 * 108.63774 * 304.77918 * 13 5 4 17 17 N 1.46963 * 108.63629 * 49.41940 * 16 13 5 18 18 C 1.34771 * 120.59684 * 124.74957 * 17 16 13 19 19 O 1.21587 * 120.00216 * 174.38640 * 18 17 16 20 20 N 1.34784 * 119.99851 * 354.39312 * 18 17 16 21 21 C 1.46500 * 120.00000 * 185.05050 * 20 18 17 22 22 C 1.50699 * 109.47164 * 180.02562 * 21 20 18 23 23 H 1.08000 * 119.99854 * 359.97438 * 22 21 20 24 24 C 1.37869 * 120.00411 * 180.02562 * 22 21 20 25 25 N 1.31518 * 119.99570 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 120.00607 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47014 * 89.99610 * 26 24 22 28 28 H 1.48493 * 109.47449 * 210.00371 * 26 24 22 29 29 H 1.48503 * 109.46926 * 330.00404 * 26 24 22 30 30 H 1.09001 * 109.47419 * 306.56033 * 1 2 3 31 31 H 1.08999 * 109.47055 * 66.55762 * 1 2 3 32 32 H 1.09001 * 109.47363 * 186.55729 * 1 2 3 33 33 H 1.09005 * 109.68310 * 71.12923 * 4 2 1 34 34 H 1.08996 * 109.62085 * 310.74036 * 4 2 1 35 35 H 1.09001 * 109.47055 * 60.00079 * 10 9 8 36 36 H 1.08996 * 109.47309 * 180.02562 * 10 9 8 37 37 H 1.08999 * 109.47170 * 300.00144 * 10 9 8 38 38 H 1.08998 * 109.46777 * 59.99620 * 11 9 8 39 39 H 1.08996 * 109.47264 * 180.02562 * 11 9 8 40 40 H 1.09001 * 109.47216 * 300.00175 * 11 9 8 41 41 H 1.09002 * 109.46995 * 59.99289 * 12 9 8 42 42 H 1.08996 * 109.47193 * 179.97438 * 12 9 8 43 43 H 1.09010 * 109.46511 * 299.99715 * 12 9 8 44 44 H 1.09001 * 109.47157 * 177.82115 * 15 13 5 45 45 H 1.09001 * 109.47263 * 297.81732 * 15 13 5 46 46 H 1.08992 * 109.47149 * 57.82060 * 15 13 5 47 47 H 1.08998 * 109.60911 * 289.67729 * 16 13 5 48 48 H 1.08997 * 109.60982 * 169.16376 * 16 13 5 49 49 H 0.96993 * 119.99805 * 5.05501 * 20 18 17 50 50 H 1.09004 * 109.47185 * 299.99735 * 21 20 18 51 51 H 1.08999 * 109.46966 * 60.00068 * 21 20 18 52 52 H 0.97002 * 120.00052 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8982 1.0259 0.0000 4 6 2.0412 -0.7248 -1.2457 5 7 3.4868 -0.9470 -1.1015 6 6 4.3453 -0.5106 -2.0444 7 8 5.5433 -0.6165 -1.8710 8 8 3.8755 0.0426 -3.1783 9 6 4.8577 0.4897 -4.1498 10 6 5.7119 -0.6988 -4.5954 11 6 4.1406 1.0851 -5.3631 12 6 5.7555 1.5534 -3.5147 13 6 3.9795 -1.6529 0.0896 14 1 3.6105 -2.6786 0.0888 15 6 5.5094 -1.6576 0.0874 16 6 3.4688 -0.9231 1.3382 17 7 2.0232 -0.7010 1.1939 18 6 1.1647 -1.1374 2.1367 19 8 -0.0165 -0.8598 2.0586 20 7 1.6155 -1.8814 3.1662 21 6 0.6689 -2.4484 4.1299 22 6 1.4231 -3.2305 5.1742 23 1 2.4998 -3.2987 5.1247 24 6 0.7387 -3.8598 6.1921 25 7 -0.5725 -3.7771 6.2521 26 14 1.6735 -4.8298 7.4862 27 1 2.0299 -3.9334 8.6152 28 1 0.8214 -5.9391 7.9848 29 1 2.9124 -5.3880 6.8873 30 1 -0.3634 0.6121 0.8254 31 1 -0.3633 0.4088 -0.9428 32 1 -0.3634 -1.0209 0.1174 33 1 1.8511 -0.1153 -2.1291 34 1 1.5320 -1.6833 -1.3462 35 1 5.0723 -1.4566 -5.0479 36 1 6.4495 -0.3631 -5.3243 37 1 6.2228 -1.1234 -3.7313 38 1 3.5317 1.9317 -5.0459 39 1 4.8779 1.4203 -6.0925 40 1 3.5012 0.3269 -5.8154 41 1 6.2664 1.1288 -2.6505 42 1 6.4931 1.8887 -4.2438 43 1 5.1469 2.4002 -3.1973 44 1 5.8725 -2.1476 0.9909 45 1 5.8699 -2.1972 -0.7884 46 1 5.8759 -0.6316 0.0583 47 1 3.9782 0.0355 1.4356 48 1 3.6588 -1.5327 2.2215 49 1 2.5666 -2.0414 3.2690 50 1 0.1135 -1.6430 4.6105 51 1 -0.0253 -3.1096 3.6113 52 1 -1.0542 -4.2201 6.9681 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787349512.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:37:25 Heat of formation + Delta-G solvation = -70.564442 kcal Electronic energy + Delta-G solvation = -32042.853644 eV Core-core repulsion = 27851.405570 eV Total energy + Delta-G solvation = -4191.448073 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.31844 -40.07769 -38.28687 -36.58757 -34.82748 -34.55479 -33.72016 -33.21681 -32.09133 -29.97737 -27.70930 -27.64407 -27.15771 -26.53649 -25.55304 -23.53662 -23.09343 -21.47468 -21.18032 -19.76896 -19.22403 -17.87362 -17.35983 -16.76718 -16.45664 -16.20928 -15.94041 -15.55907 -15.27262 -14.86198 -14.75305 -14.59209 -14.06495 -13.99509 -13.78476 -13.52298 -13.00552 -12.98319 -12.89608 -12.70616 -12.45605 -12.35127 -12.17921 -12.09699 -11.91382 -11.84352 -11.76488 -11.67600 -11.62893 -11.52205 -11.38709 -11.26034 -11.00689 -10.93017 -10.87254 -10.54256 -10.26219 -9.50587 -9.37335 -9.22637 -8.73780 -8.67001 -8.23006 -7.74113 -6.16050 -4.22610 1.90879 2.67701 3.06424 3.24491 3.30991 3.33263 3.58598 3.84672 4.29599 4.43668 4.48165 4.50644 4.61490 4.63520 4.83871 4.87403 5.01279 5.09768 5.16837 5.18325 5.20274 5.24833 5.29465 5.39810 5.44018 5.47603 5.52532 5.57765 5.64592 5.67534 5.69985 5.77313 5.92249 6.00565 6.01416 6.02965 6.18032 6.24176 6.36854 6.45873 6.57245 6.92154 7.07454 7.25891 7.50101 7.53217 7.56305 7.82926 8.01119 8.19771 8.74161 8.87603 9.30182 9.46507 10.94087 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.020974 B = 0.002539 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.677365 B =11025.005143 C =12013.878443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.152 3.848 3 H 0.067 0.933 4 C 0.100 3.900 5 N -0.591 5.591 6 C 0.654 3.346 7 O -0.562 6.562 8 O -0.366 6.366 9 C 0.137 3.863 10 C -0.182 4.182 11 C -0.141 4.141 12 C -0.182 4.182 13 C 0.144 3.856 14 H 0.083 0.917 15 C -0.137 4.137 16 C 0.103 3.897 17 N -0.638 5.638 18 C 0.697 3.303 19 O -0.587 6.587 20 N -0.730 5.730 21 C 0.267 3.733 22 C -0.542 4.542 23 H 0.061 0.939 24 C 0.064 3.936 25 N -0.885 5.885 26 Si 0.903 3.097 27 H -0.279 1.279 28 H -0.285 1.285 29 H -0.273 1.273 30 H 0.082 0.918 31 H 0.038 0.962 32 H 0.074 0.926 33 H 0.100 0.900 34 H 0.076 0.924 35 H 0.058 0.942 36 H 0.068 0.932 37 H 0.088 0.912 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.066 0.934 41 H 0.088 0.912 42 H 0.068 0.932 43 H 0.058 0.942 44 H 0.051 0.949 45 H 0.076 0.924 46 H 0.075 0.925 47 H 0.071 0.929 48 H 0.096 0.904 49 H 0.384 0.616 50 H 0.025 0.975 51 H 0.024 0.976 52 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.255 8.823 -22.130 26.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.047 3.953 3 H 0.085 0.915 4 C -0.023 4.023 5 N -0.331 5.331 6 C 0.410 3.590 7 O -0.452 6.452 8 O -0.281 6.281 9 C 0.100 3.900 10 C -0.240 4.240 11 C -0.198 4.198 12 C -0.239 4.239 13 C 0.041 3.959 14 H 0.101 0.899 15 C -0.194 4.194 16 C -0.022 4.022 17 N -0.377 5.377 18 C 0.399 3.601 19 O -0.466 6.466 20 N -0.384 5.384 21 C 0.146 3.854 22 C -0.580 4.580 23 H 0.079 0.921 24 C -0.140 4.140 25 N -0.522 5.522 26 Si 0.730 3.270 27 H -0.205 1.205 28 H -0.210 1.210 29 H -0.198 1.198 30 H 0.101 0.899 31 H 0.057 0.943 32 H 0.093 0.907 33 H 0.118 0.882 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.107 0.893 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.107 0.893 42 H 0.087 0.913 43 H 0.077 0.923 44 H 0.070 0.930 45 H 0.095 0.905 46 H 0.094 0.906 47 H 0.089 0.911 48 H 0.114 0.886 49 H 0.218 0.782 50 H 0.043 0.957 51 H 0.042 0.958 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.561 8.922 -22.046 26.444 hybrid contribution 0.935 -0.646 0.772 1.374 sum 12.496 8.276 -21.274 26.023 Atomic orbital electron populations 1.22126 0.91338 1.04929 1.00507 1.21262 0.96590 0.94512 0.82944 0.91460 1.22260 0.79087 1.01835 0.99133 1.46996 1.06689 1.59142 1.20249 1.18069 0.84148 0.76926 0.79902 1.90948 1.14140 1.60862 1.79279 1.86304 1.41080 1.73224 1.27502 1.22028 0.87284 0.94316 0.86397 1.22509 1.00282 0.97766 1.03396 1.21858 1.01174 1.01465 0.95310 1.22506 1.00012 0.98271 1.03160 1.21739 0.96418 0.95233 0.82480 0.89873 1.22223 0.91407 1.04163 1.01621 1.22086 0.81576 1.00860 0.97665 1.47333 1.05531 1.62619 1.22265 1.16095 0.84728 0.79251 0.80013 1.90914 1.15278 1.62699 1.77710 1.46007 1.11176 1.53511 1.27746 1.18974 0.87859 0.93126 0.85413 1.21209 0.93567 1.32981 1.10253 0.92052 1.24934 0.94912 0.96299 0.97833 1.69978 1.06394 1.43077 1.32790 0.86426 0.79572 0.79537 0.81431 1.20480 1.21022 1.19770 0.89895 0.94301 0.90712 0.88188 0.90610 0.92296 0.91333 0.89310 0.91471 0.90270 0.91512 0.89299 0.91341 0.92252 0.92987 0.90540 0.90616 0.91082 0.88589 0.78153 0.95661 0.95824 0.92473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.90 7.58 37.16 0.28 -1.62 16 2 C 0.15 2.01 3.63 -67.71 -0.25 1.76 16 3 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 4 C 0.10 1.14 5.89 -3.83 -0.02 1.11 16 5 N -0.59 -6.94 2.95 -170.97 -0.50 -7.44 16 6 C 0.65 7.85 7.65 54.06 0.41 8.26 16 7 O -0.56 -7.13 7.26 -19.28 -0.14 -7.27 16 8 O -0.37 -3.99 8.54 -40.30 -0.34 -4.33 16 9 C 0.14 1.19 1.13 -90.62 -0.10 1.09 16 10 C -0.18 -1.54 8.37 37.16 0.31 -1.23 16 11 C -0.14 -0.89 8.85 37.16 0.33 -0.57 16 12 C -0.18 -1.55 8.37 37.16 0.31 -1.23 16 13 C 0.14 1.67 3.65 -67.49 -0.25 1.42 16 14 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 15 C -0.14 -1.48 7.58 37.16 0.28 -1.20 16 16 C 0.10 1.28 5.91 -3.60 -0.02 1.26 16 17 N -0.64 -9.74 2.95 -170.89 -0.50 -10.25 16 18 C 0.70 13.93 8.12 -86.92 -0.71 13.22 16 19 O -0.59 -13.52 11.87 5.29 0.06 -13.46 16 20 N -0.73 -15.35 5.46 -66.41 -0.36 -15.71 16 21 C 0.27 7.02 5.43 -5.19 -0.03 6.99 16 22 C -0.54 -14.55 9.28 -34.44 -0.32 -14.87 16 23 H 0.06 1.54 7.60 -52.49 -0.40 1.14 16 24 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 25 N -0.88 -25.89 13.29 55.43 0.74 -25.16 16 26 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 27 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 28 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 29 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 30 H 0.08 1.41 6.72 -51.93 -0.35 1.06 16 31 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 1.27 6.76 -51.93 -0.35 0.92 16 33 H 0.10 0.99 6.94 -51.93 -0.36 0.63 16 34 H 0.08 0.89 8.11 -51.93 -0.42 0.46 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.09 0.93 5.88 -51.93 -0.31 0.63 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.09 0.94 5.88 -51.93 -0.31 0.64 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.50 8.14 -51.92 -0.42 0.07 16 44 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.08 0.90 6.71 -51.93 -0.35 0.56 16 46 H 0.07 0.89 6.77 -51.93 -0.35 0.54 16 47 H 0.07 0.84 8.12 -51.93 -0.42 0.42 16 48 H 0.10 1.17 5.55 -51.93 -0.29 0.88 16 49 H 0.38 7.02 5.77 -40.82 -0.24 6.78 16 50 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 51 H 0.02 0.69 8.14 -51.93 -0.42 0.26 16 52 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 395.03 15.07 5.95 5.95 Total: -1.00 -31.43 395.03 -8.75 -40.18 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -8.77 Total: 5.70 kcal Atomic # 6 Polarization: 15.94 SS G_CDS: 0.14 Total: 16.07 kcal Atomic # 7 Polarization: -57.93 SS G_CDS: -0.64 Total: -58.56 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -0.42 Total: -25.06 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.43 -8.75 -40.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787349512.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.383 kcal (2) G-P(sol) polarization free energy of solvation -31.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds