Wall clock time and date at job start Wed Apr 1 2020 01:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.74406 * 2 1 4 4 C 1.52923 * 109.52927 * 239.80596 * 2 1 3 5 5 N 1.46963 * 108.69321 * 190.95492 * 4 2 1 6 6 C 1.34783 * 120.59326 * 235.12517 * 5 4 2 7 7 O 1.21506 * 119.99903 * 174.87081 * 6 5 4 8 8 O 1.34633 * 119.99778 * 354.86540 * 6 5 4 9 9 C 1.45203 * 116.99818 * 180.02562 * 8 6 5 10 10 C 1.53003 * 109.47141 * 60.00054 * 9 8 6 11 11 C 1.52995 * 109.47394 * 179.97438 * 9 8 6 12 12 C 1.53001 * 109.47230 * 300.00390 * 9 8 6 13 13 C 1.46960 * 118.81326 * 55.09585 * 5 4 2 14 14 H 1.09005 * 109.74974 * 64.60483 * 13 5 4 15 15 C 1.52995 * 109.61118 * 185.03123 * 13 5 4 16 16 C 1.53370 * 108.63774 * 304.77918 * 13 5 4 17 17 N 1.46963 * 108.63629 * 49.41940 * 16 13 5 18 18 C 1.34771 * 120.59684 * 124.74957 * 17 16 13 19 19 O 1.21587 * 120.00216 * 174.38640 * 18 17 16 20 20 N 1.34784 * 119.99851 * 354.39312 * 18 17 16 21 21 C 1.46500 * 120.00000 * 185.05050 * 20 18 17 22 22 C 1.50699 * 109.47164 * 180.02562 * 21 20 18 23 23 H 1.08000 * 119.99854 * 359.97438 * 22 21 20 24 24 C 1.37869 * 120.00411 * 180.02562 * 22 21 20 25 25 N 1.31518 * 119.99570 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 120.00607 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47014 * 89.99610 * 26 24 22 28 28 H 1.48493 * 109.47449 * 210.00371 * 26 24 22 29 29 H 1.48503 * 109.46926 * 330.00404 * 26 24 22 30 30 H 1.09001 * 109.47419 * 306.56033 * 1 2 3 31 31 H 1.08999 * 109.47055 * 66.55762 * 1 2 3 32 32 H 1.09001 * 109.47363 * 186.55729 * 1 2 3 33 33 H 1.09005 * 109.68310 * 71.12923 * 4 2 1 34 34 H 1.08996 * 109.62085 * 310.74036 * 4 2 1 35 35 H 1.09001 * 109.47055 * 60.00079 * 10 9 8 36 36 H 1.08996 * 109.47309 * 180.02562 * 10 9 8 37 37 H 1.08999 * 109.47170 * 300.00144 * 10 9 8 38 38 H 1.08998 * 109.46777 * 59.99620 * 11 9 8 39 39 H 1.08996 * 109.47264 * 180.02562 * 11 9 8 40 40 H 1.09001 * 109.47216 * 300.00175 * 11 9 8 41 41 H 1.09002 * 109.46995 * 59.99289 * 12 9 8 42 42 H 1.08996 * 109.47193 * 179.97438 * 12 9 8 43 43 H 1.09010 * 109.46511 * 299.99715 * 12 9 8 44 44 H 1.09001 * 109.47157 * 177.82115 * 15 13 5 45 45 H 1.09001 * 109.47263 * 297.81732 * 15 13 5 46 46 H 1.08992 * 109.47149 * 57.82060 * 15 13 5 47 47 H 1.08998 * 109.60911 * 289.67729 * 16 13 5 48 48 H 1.08997 * 109.60982 * 169.16376 * 16 13 5 49 49 H 0.96993 * 119.99805 * 5.05501 * 20 18 17 50 50 H 1.09004 * 109.47185 * 299.99735 * 21 20 18 51 51 H 1.08999 * 109.46966 * 60.00068 * 21 20 18 52 52 H 0.97002 * 120.00052 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8982 1.0259 0.0000 4 6 2.0412 -0.7248 -1.2457 5 7 3.4868 -0.9470 -1.1015 6 6 4.3453 -0.5106 -2.0444 7 8 5.5433 -0.6165 -1.8710 8 8 3.8755 0.0426 -3.1783 9 6 4.8577 0.4897 -4.1498 10 6 5.7119 -0.6988 -4.5954 11 6 4.1406 1.0851 -5.3631 12 6 5.7555 1.5534 -3.5147 13 6 3.9795 -1.6529 0.0896 14 1 3.6105 -2.6786 0.0888 15 6 5.5094 -1.6576 0.0874 16 6 3.4688 -0.9231 1.3382 17 7 2.0232 -0.7010 1.1939 18 6 1.1647 -1.1374 2.1367 19 8 -0.0165 -0.8598 2.0586 20 7 1.6155 -1.8814 3.1662 21 6 0.6689 -2.4484 4.1299 22 6 1.4231 -3.2305 5.1742 23 1 2.4998 -3.2987 5.1247 24 6 0.7387 -3.8598 6.1921 25 7 -0.5725 -3.7771 6.2521 26 14 1.6735 -4.8298 7.4862 27 1 2.0299 -3.9334 8.6152 28 1 0.8214 -5.9391 7.9848 29 1 2.9124 -5.3880 6.8873 30 1 -0.3634 0.6121 0.8254 31 1 -0.3633 0.4088 -0.9428 32 1 -0.3634 -1.0209 0.1174 33 1 1.8511 -0.1153 -2.1291 34 1 1.5320 -1.6833 -1.3462 35 1 5.0723 -1.4566 -5.0479 36 1 6.4495 -0.3631 -5.3243 37 1 6.2228 -1.1234 -3.7313 38 1 3.5317 1.9317 -5.0459 39 1 4.8779 1.4203 -6.0925 40 1 3.5012 0.3269 -5.8154 41 1 6.2664 1.1288 -2.6505 42 1 6.4931 1.8887 -4.2438 43 1 5.1469 2.4002 -3.1973 44 1 5.8725 -2.1476 0.9909 45 1 5.8699 -2.1972 -0.7884 46 1 5.8759 -0.6316 0.0583 47 1 3.9782 0.0355 1.4356 48 1 3.6588 -1.5327 2.2215 49 1 2.5666 -2.0414 3.2690 50 1 0.1135 -1.6430 4.6105 51 1 -0.0253 -3.1096 3.6113 52 1 -1.0542 -4.2201 6.9681 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787349512.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:37:24 Heat of formation + Delta-G solvation = -90.494940 kcal Electronic energy + Delta-G solvation = -32043.717895 eV Core-core repulsion = 27851.405570 eV Total energy + Delta-G solvation = -4192.312325 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.28858 -41.35275 -39.36395 -37.67762 -36.43126 -35.54774 -34.89170 -34.69666 -33.66063 -31.17651 -29.02613 -28.29581 -28.25267 -27.70682 -26.63430 -24.93580 -24.42581 -22.90540 -22.11396 -21.07102 -20.35022 -19.22435 -18.42943 -17.98651 -17.62581 -17.42912 -17.28709 -16.77843 -16.58590 -16.31103 -15.67939 -15.55892 -15.50325 -15.20910 -14.75358 -14.67706 -14.45756 -14.01288 -13.99206 -13.95189 -13.70554 -13.43320 -13.15000 -13.07167 -12.94414 -12.85718 -12.82198 -12.74234 -12.70114 -12.63605 -12.61970 -12.41311 -12.39269 -12.17654 -12.04391 -11.96625 -11.44282 -11.28311 -10.77665 -10.56933 -10.27217 -10.16854 -9.79488 -9.24247 -8.26743 -6.42612 1.03377 1.44365 1.46665 1.57398 1.74136 1.76302 2.24284 2.39276 2.74228 3.08401 3.08925 3.61539 3.71890 3.81264 3.86455 3.90292 4.00846 4.01464 4.08043 4.15432 4.38493 4.44277 4.56084 4.65745 4.67696 4.68837 4.76545 4.82756 4.83023 4.86350 4.90903 4.93925 5.05649 5.10300 5.12285 5.14841 5.27369 5.31153 5.33753 5.34610 5.39787 5.47393 5.49919 5.57044 5.72583 5.74509 5.87704 6.07725 6.34738 6.69034 7.18342 7.27475 7.30208 7.73546 8.85330 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.020974 B = 0.002539 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.677365 B =11025.005143 C =12013.878443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.150 3.850 3 H 0.082 0.918 4 C 0.111 3.889 5 N -0.594 5.594 6 C 0.652 3.348 7 O -0.570 6.570 8 O -0.370 6.370 9 C 0.126 3.874 10 C -0.178 4.178 11 C -0.137 4.137 12 C -0.178 4.178 13 C 0.148 3.852 14 H 0.080 0.920 15 C -0.124 4.124 16 C 0.102 3.898 17 N -0.629 5.629 18 C 0.695 3.305 19 O -0.623 6.623 20 N -0.727 5.727 21 C 0.289 3.711 22 C -0.553 4.553 23 H 0.081 0.919 24 C 0.005 3.995 25 N -0.930 5.930 26 Si 0.982 3.018 27 H -0.272 1.272 28 H -0.284 1.284 29 H -0.255 1.255 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.044 0.956 33 H 0.120 0.880 34 H 0.072 0.928 35 H 0.057 0.943 36 H 0.088 0.912 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.100 0.900 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.087 0.913 43 H 0.058 0.942 44 H 0.067 0.933 45 H 0.066 0.934 46 H 0.067 0.933 47 H 0.085 0.915 48 H 0.100 0.900 49 H 0.399 0.601 50 H -0.015 1.015 51 H -0.013 1.013 52 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.727 9.086 -23.448 29.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.046 3.954 3 H 0.100 0.900 4 C -0.013 4.013 5 N -0.334 5.334 6 C 0.408 3.592 7 O -0.461 6.461 8 O -0.286 6.286 9 C 0.090 3.910 10 C -0.235 4.235 11 C -0.194 4.194 12 C -0.235 4.235 13 C 0.045 3.955 14 H 0.098 0.902 15 C -0.181 4.181 16 C -0.022 4.022 17 N -0.367 5.367 18 C 0.396 3.604 19 O -0.505 6.505 20 N -0.383 5.383 21 C 0.165 3.835 22 C -0.591 4.591 23 H 0.099 0.901 24 C -0.194 4.194 25 N -0.568 5.568 26 Si 0.806 3.194 27 H -0.197 1.197 28 H -0.210 1.210 29 H -0.179 1.179 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.063 0.937 33 H 0.138 0.862 34 H 0.090 0.910 35 H 0.076 0.924 36 H 0.106 0.894 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.118 0.882 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.106 0.894 43 H 0.077 0.923 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.086 0.914 47 H 0.103 0.897 48 H 0.118 0.882 49 H 0.236 0.764 50 H 0.003 0.997 51 H 0.004 0.996 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 14.103 9.213 -23.428 28.855 hybrid contribution 0.171 -0.644 1.057 1.250 sum 14.273 8.569 -22.371 27.885 Atomic orbital electron populations 1.21906 0.92308 1.02588 1.01110 1.21452 0.95818 0.95339 0.82806 0.89988 1.22156 0.78836 1.01746 0.98535 1.47018 1.06758 1.59213 1.20395 1.18138 0.84005 0.76882 0.80197 1.90959 1.14506 1.61070 1.79545 1.86307 1.41950 1.72980 1.27316 1.22366 0.87465 0.94467 0.86678 1.22458 1.00511 0.97681 1.02866 1.21879 1.01626 1.01359 0.94490 1.22452 1.00230 0.97990 1.02804 1.21689 0.96924 0.94876 0.82017 0.90167 1.22072 0.90501 1.03619 1.01911 1.22276 0.79568 1.01878 0.98446 1.47324 1.06289 1.61521 1.21574 1.16245 0.84766 0.78994 0.80354 1.90913 1.17212 1.63812 1.78538 1.45622 1.11156 1.53963 1.27552 1.18367 0.88072 0.91185 0.85842 1.21581 0.94556 1.32743 1.10234 0.90052 1.26017 0.95759 0.97330 1.00343 1.70138 1.08507 1.44277 1.33889 0.85190 0.78426 0.77689 0.78120 1.19717 1.21005 1.17921 0.92930 0.90721 0.93692 0.86170 0.90982 0.92372 0.89353 0.91591 0.91294 0.88164 0.91408 0.91583 0.89389 0.92262 0.91457 0.91515 0.91419 0.89686 0.88206 0.76367 0.99697 0.99553 0.92300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.52 7.58 71.98 0.55 -2.98 16 2 C 0.15 3.81 3.63 44.88 0.16 3.98 16 3 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 4 C 0.11 2.32 5.89 86.27 0.51 2.83 16 5 N -0.59 -13.01 2.95 -925.24 -2.73 -15.74 16 6 C 0.65 14.67 7.65 129.79 0.99 15.66 16 7 O -0.57 -13.85 7.26 19.82 0.14 -13.70 16 8 O -0.37 -7.37 8.54 -55.42 -0.47 -7.84 16 9 C 0.13 1.93 1.13 -10.79 -0.01 1.92 16 10 C -0.18 -2.69 8.37 71.98 0.60 -2.09 16 11 C -0.14 -1.35 8.85 71.98 0.64 -0.71 16 12 C -0.18 -2.67 8.37 71.98 0.60 -2.07 16 13 C 0.15 3.21 3.65 45.03 0.16 3.37 16 14 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 15 C -0.12 -2.47 7.58 71.98 0.55 -1.93 16 16 C 0.10 2.40 5.91 86.42 0.51 2.91 16 17 N -0.63 -18.97 2.95 -812.85 -2.40 -21.37 16 18 C 0.69 28.49 8.12 179.05 1.45 29.95 16 19 O -0.62 -30.20 11.87 -3.99 -0.05 -30.25 16 20 N -0.73 -31.25 5.46 -482.29 -2.63 -33.89 16 21 C 0.29 15.84 5.43 85.63 0.47 16.30 16 22 C -0.55 -29.96 9.28 25.60 0.24 -29.72 16 23 H 0.08 3.99 7.60 -2.91 -0.02 3.96 16 24 C 0.01 0.29 5.46 84.65 0.46 0.75 16 25 N -0.93 -55.87 13.29 21.44 0.28 -55.59 16 26 Si 0.98 42.18 29.54 68.60 2.03 44.21 16 27 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 28 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 29 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 30 H 0.05 1.85 6.72 -2.39 -0.02 1.83 16 31 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.04 1.57 6.76 -2.39 -0.02 1.55 16 33 H 0.12 2.08 6.94 -2.38 -0.02 2.06 16 34 H 0.07 1.60 8.11 -2.39 -0.02 1.58 16 35 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.07 1.32 5.88 -2.39 -0.01 1.31 16 38 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.07 1.32 5.88 -2.39 -0.01 1.31 16 42 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 44 H 0.07 1.13 8.14 -2.39 -0.02 1.12 16 45 H 0.07 1.50 6.71 -2.39 -0.02 1.48 16 46 H 0.07 1.49 6.77 -2.39 -0.02 1.47 16 47 H 0.08 1.82 8.12 -2.39 -0.02 1.81 16 48 H 0.10 2.27 5.55 -2.39 -0.01 2.26 16 49 H 0.40 14.44 5.77 -92.71 -0.54 13.90 16 50 H -0.01 -0.93 8.14 -2.38 -0.02 -0.95 16 51 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 52 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -71.08 395.03 2.43 -68.66 By element: Atomic # 1 Polarization: 26.97 SS G_CDS: 0.38 Total: 27.35 kcal Atomic # 6 Polarization: 30.30 SS G_CDS: 7.88 Total: 38.17 kcal Atomic # 7 Polarization: -119.11 SS G_CDS: -7.48 Total: -126.59 kcal Atomic # 8 Polarization: -51.42 SS G_CDS: -0.38 Total: -51.80 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -71.08 2.43 -68.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787349512.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.840 kcal (2) G-P(sol) polarization free energy of solvation -71.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds