Wall clock time and date at job start Wed Apr 1 2020 01:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08991 * 109.74970 * 2 1 4 4 C 1.52936 * 109.68726 * 239.68770 * 2 1 3 5 5 N 1.46958 * 108.87253 * 190.97122 * 4 2 1 6 6 C 1.34780 * 120.58917 * 235.21224 * 5 4 2 7 7 O 1.21592 * 119.99729 * 185.42859 * 6 5 4 8 8 N 1.34778 * 120.00214 * 5.42800 * 6 5 4 9 9 C 1.46498 * 119.99731 * 174.93486 * 8 6 5 10 10 C 1.50704 * 109.46750 * 179.97438 * 9 8 6 11 11 H 1.07995 * 120.00295 * 0.02562 * 10 9 8 12 12 C 1.37878 * 119.99823 * 180.02562 * 10 9 8 13 13 N 1.31518 * 120.00204 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99944 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47444 * 59.99458 * 14 12 10 16 16 H 1.48498 * 109.47256 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46837 * 299.99845 * 14 12 10 18 18 C 1.46962 * 118.81825 * 54.93199 * 5 4 2 19 19 H 1.08998 * 109.60469 * 64.76800 * 18 5 4 20 20 C 1.52994 * 109.61365 * 185.11257 * 18 5 4 21 21 C 1.53375 * 108.63201 * 305.03198 * 18 5 4 22 22 N 1.46960 * 108.63931 * 49.41909 * 21 18 5 23 23 C 1.34783 * 120.59611 * 124.79487 * 22 21 18 24 24 O 1.21507 * 120.00047 * 174.57557 * 23 22 21 25 25 O 1.34630 * 119.99489 * 354.57759 * 23 22 21 26 26 C 1.45204 * 116.99691 * 179.97438 * 25 23 22 27 27 C 1.53004 * 109.47217 * 59.99783 * 26 25 23 28 28 C 1.52996 * 109.47199 * 179.97438 * 26 25 23 29 29 C 1.52997 * 109.47132 * 299.99794 * 26 25 23 30 30 H 1.09004 * 109.47385 * 306.18817 * 1 2 3 31 31 H 1.09002 * 109.47359 * 66.18839 * 1 2 3 32 32 H 1.09002 * 109.47685 * 186.18957 * 1 2 3 33 33 H 1.08997 * 109.51918 * 71.12570 * 4 2 1 34 34 H 1.08998 * 109.45355 * 310.76702 * 4 2 1 35 35 H 0.96996 * 119.99655 * 354.94035 * 8 6 5 36 36 H 1.09003 * 109.47144 * 60.00388 * 9 8 6 37 37 H 1.08995 * 109.47400 * 300.00180 * 9 8 6 38 38 H 0.96992 * 120.00361 * 180.02562 * 13 12 10 39 39 H 1.08999 * 109.47376 * 53.82655 * 20 18 5 40 40 H 1.09004 * 109.46708 * 173.82205 * 20 18 5 41 41 H 1.08999 * 109.46976 * 293.82252 * 20 18 5 42 42 H 1.09007 * 109.60892 * 169.16341 * 21 18 5 43 43 H 1.09002 * 109.60794 * 289.66790 * 21 18 5 44 44 H 1.09008 * 109.46972 * 59.99855 * 27 26 25 45 45 H 1.08993 * 109.47262 * 179.97438 * 27 26 25 46 46 H 1.09000 * 109.47062 * 300.00387 * 27 26 25 47 47 H 1.09003 * 109.47395 * 59.99872 * 28 26 25 48 48 H 1.09001 * 109.47568 * 180.02562 * 28 26 25 49 49 H 1.09007 * 109.47431 * 299.99886 * 28 26 25 50 50 H 1.09000 * 109.46841 * 59.99801 * 29 26 25 51 51 H 1.09000 * 109.47350 * 179.97438 * 29 26 25 52 52 H 1.08994 * 109.47066 * 299.99766 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8983 1.0258 0.0000 4 6 2.0452 -0.7268 -1.2431 5 7 3.4907 -0.9490 -1.0989 6 6 4.3491 -0.5126 -2.0418 7 8 5.5309 -0.7874 -1.9620 8 7 3.8977 0.2285 -3.0731 9 6 4.8440 0.7959 -4.0368 10 6 4.0891 1.5744 -5.0833 11 1 3.0122 1.6402 -5.0351 12 6 4.7732 2.2025 -6.1023 13 7 6.0846 2.1219 -6.1614 14 14 3.8375 3.1679 -7.3991 15 1 3.0779 4.2650 -6.7474 16 1 4.7966 3.7420 -8.3768 17 1 2.8940 2.2637 -8.1045 18 6 3.9840 -1.6501 0.0948 19 1 3.6156 -2.6760 0.0948 20 6 5.5139 -1.6539 0.0926 21 6 3.4692 -0.9184 1.3406 22 7 2.0232 -0.7012 1.1937 23 6 1.1647 -1.1368 2.1371 24 8 -0.0170 -0.8661 2.0548 25 8 1.6166 -1.8718 3.1706 26 6 0.6358 -2.3063 4.1491 27 6 -0.4225 -3.1710 3.4612 28 6 1.3310 -3.1233 5.2399 29 6 -0.0348 -1.0828 4.7770 30 1 -0.3634 0.6068 0.8294 31 1 -0.3634 0.4149 -0.9402 32 1 -0.3634 -1.0217 0.1108 33 1 1.8550 -0.1171 -2.1264 34 1 1.5356 -1.6854 -1.3405 35 1 2.9463 0.3862 -3.1771 36 1 5.4019 -0.0090 -4.5153 37 1 5.5362 1.4596 -3.5187 38 1 6.5659 2.5641 -6.8780 39 1 5.8796 -0.6324 -0.0118 40 1 5.8775 -2.0759 1.0296 41 1 5.8746 -2.2560 -0.7413 42 1 3.6599 -1.5250 2.2260 43 1 3.9757 0.0420 1.4361 44 1 0.0552 -4.0427 3.0139 45 1 -1.1585 -3.4975 4.1959 46 1 -0.9179 -2.5893 2.6839 47 1 2.0852 -2.5077 5.7301 48 1 0.5947 -3.4499 5.9743 49 1 1.8084 -3.9951 4.7924 50 1 -0.5301 -0.5010 3.9996 51 1 -0.7714 -1.4089 5.5112 52 1 0.7191 -0.4668 5.2671 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787349520.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:37:27 Heat of formation + Delta-G solvation = -91.266466 kcal Electronic energy + Delta-G solvation = -32051.934626 eV Core-core repulsion = 27859.588845 eV Total energy + Delta-G solvation = -4192.345781 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.28808 -41.35202 -39.36358 -37.67580 -36.43480 -35.54241 -34.89356 -34.69329 -33.66055 -31.17627 -29.02405 -28.29691 -28.25160 -27.70696 -26.63963 -24.93417 -24.44087 -22.90783 -22.09375 -21.05895 -20.34939 -19.21768 -18.45018 -17.98892 -17.66345 -17.42282 -17.32290 -16.76990 -16.53059 -16.27361 -15.68033 -15.57640 -15.49247 -15.20908 -14.80011 -14.67452 -14.45415 -14.00421 -13.98375 -13.93162 -13.70880 -13.42949 -13.15138 -13.07307 -12.91711 -12.87908 -12.83390 -12.72547 -12.69192 -12.64761 -12.62120 -12.40127 -12.39989 -12.18511 -12.04271 -11.96960 -11.46575 -11.28565 -10.76413 -10.59715 -10.27897 -10.16261 -9.79527 -9.24709 -8.26448 -6.42477 1.03399 1.44347 1.48350 1.56094 1.73206 1.77295 2.24332 2.39466 2.73883 3.08503 3.08790 3.61922 3.70858 3.81134 3.86365 3.90132 4.00740 4.01516 4.08574 4.15806 4.38237 4.44642 4.56400 4.64605 4.67623 4.68297 4.76182 4.82722 4.83150 4.85943 4.90930 4.93898 5.05816 5.09857 5.12862 5.14896 5.27357 5.31232 5.33728 5.34560 5.39715 5.47217 5.49744 5.56158 5.72683 5.74618 5.87738 6.07663 6.34626 6.68916 7.18359 7.27554 7.30089 7.73613 8.85393 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.021008 B = 0.002544 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.494217 B =11002.615198 C =11998.397160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.148 3.852 3 H 0.080 0.920 4 C 0.102 3.898 5 N -0.629 5.629 6 C 0.694 3.306 7 O -0.623 6.623 8 N -0.727 5.727 9 C 0.289 3.711 10 C -0.554 4.554 11 H 0.081 0.919 12 C 0.006 3.994 13 N -0.929 5.929 14 Si 0.982 3.018 15 H -0.262 1.262 16 H -0.286 1.286 17 H -0.263 1.263 18 C 0.150 3.850 19 H 0.083 0.917 20 C -0.122 4.122 21 C 0.111 3.889 22 N -0.594 5.594 23 C 0.652 3.348 24 O -0.571 6.571 25 O -0.370 6.370 26 C 0.126 3.874 27 C -0.178 4.178 28 C -0.137 4.137 29 C -0.178 4.178 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.100 0.900 34 H 0.085 0.915 35 H 0.399 0.601 36 H -0.015 1.015 37 H -0.014 1.014 38 H 0.268 0.732 39 H 0.043 0.957 40 H 0.074 0.926 41 H 0.052 0.948 42 H 0.120 0.880 43 H 0.072 0.928 44 H 0.058 0.942 45 H 0.087 0.913 46 H 0.066 0.934 47 H 0.068 0.932 48 H 0.100 0.900 49 H 0.067 0.933 50 H 0.065 0.935 51 H 0.088 0.912 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.778 -9.607 23.129 29.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.045 3.955 3 H 0.098 0.902 4 C -0.022 4.022 5 N -0.367 5.367 6 C 0.396 3.604 7 O -0.505 6.505 8 N -0.383 5.383 9 C 0.166 3.834 10 C -0.592 4.592 11 H 0.099 0.901 12 C -0.194 4.194 13 N -0.568 5.568 14 Si 0.806 3.194 15 H -0.187 1.187 16 H -0.212 1.212 17 H -0.188 1.188 18 C 0.046 3.954 19 H 0.101 0.899 20 C -0.179 4.179 21 C -0.013 4.013 22 N -0.334 5.334 23 C 0.408 3.592 24 O -0.461 6.461 25 O -0.285 6.285 26 C 0.090 3.910 27 C -0.235 4.235 28 C -0.194 4.194 29 C -0.235 4.235 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.118 0.882 34 H 0.103 0.897 35 H 0.236 0.764 36 H 0.003 0.997 37 H 0.004 0.996 38 H 0.077 0.923 39 H 0.062 0.938 40 H 0.093 0.907 41 H 0.071 0.929 42 H 0.138 0.862 43 H 0.091 0.909 44 H 0.077 0.923 45 H 0.106 0.894 46 H 0.084 0.916 47 H 0.087 0.913 48 H 0.118 0.882 49 H 0.087 0.913 50 H 0.084 0.916 51 H 0.107 0.893 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.145 -9.693 23.128 28.791 hybrid contribution -0.180 0.661 -1.040 1.245 sum -14.325 -9.032 22.088 27.833 Atomic orbital electron populations 1.22050 0.90496 1.03566 1.02042 1.21602 0.96893 0.95066 0.81920 0.90246 1.22189 0.79630 1.01922 0.98476 1.47324 1.06262 1.61512 1.21609 1.16251 0.84777 0.78980 0.80358 1.90915 1.17160 1.63813 1.78583 1.45621 1.11128 1.54110 1.27429 1.18361 0.88071 0.91169 0.85832 1.21556 0.94536 1.32986 1.10161 0.90050 1.26018 0.95761 0.97284 1.00356 1.70127 1.08516 1.44203 1.33947 0.85245 0.77951 0.78649 0.77598 1.18655 1.21167 1.18755 1.21549 0.95799 0.95323 0.82770 0.89920 1.21905 0.92344 1.02526 1.01146 1.22241 0.78776 1.01656 0.98620 1.47038 1.06650 1.59159 1.20557 1.18123 0.83798 0.77486 0.79800 1.90952 1.15842 1.61780 1.77557 1.86306 1.42987 1.65144 1.34071 1.22366 0.87450 0.94783 0.86378 1.22458 0.99055 0.99587 1.02397 1.21881 1.01782 0.99479 0.96211 1.22451 1.01514 0.97662 1.01872 0.91160 0.91290 0.91860 0.88169 0.89688 0.76368 0.99691 0.99579 0.92289 0.93759 0.90745 0.92870 0.86153 0.90931 0.92307 0.89387 0.91551 0.91340 0.88168 0.91345 0.91648 0.89350 0.92318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.48 7.59 71.98 0.55 -1.93 16 2 C 0.15 3.22 3.63 44.88 0.16 3.38 16 3 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 4 C 0.10 2.37 5.88 86.27 0.51 2.88 16 5 N -0.63 -18.93 2.95 -812.88 -2.40 -21.33 16 6 C 0.69 28.47 8.12 179.05 1.45 29.92 16 7 O -0.62 -30.19 11.86 -4.01 -0.05 -30.23 16 8 N -0.73 -31.23 5.46 -482.29 -2.63 -33.87 16 9 C 0.29 15.86 5.43 85.63 0.47 16.32 16 10 C -0.55 -30.03 9.28 25.60 0.24 -29.79 16 11 H 0.08 3.98 7.60 -2.91 -0.02 3.95 16 12 C 0.01 0.31 5.46 84.65 0.46 0.77 16 13 N -0.93 -55.88 13.29 21.45 0.28 -55.59 16 14 Si 0.98 42.15 29.54 68.60 2.03 44.18 16 15 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 16 H -0.29 -12.22 7.11 99.48 0.71 -11.51 16 17 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 18 C 0.15 3.80 3.64 45.03 0.16 3.96 16 19 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 20 C -0.12 -3.53 7.60 71.98 0.55 -2.98 16 21 C 0.11 2.32 5.93 86.42 0.51 2.83 16 22 N -0.59 -13.03 2.95 -925.18 -2.73 -15.76 16 23 C 0.65 14.70 7.56 129.79 0.98 15.68 16 24 O -0.57 -13.93 7.39 19.82 0.15 -13.78 16 25 O -0.37 -7.36 8.52 -55.39 -0.47 -7.83 16 26 C 0.13 1.93 1.13 -10.79 -0.01 1.92 16 27 C -0.18 -2.68 8.37 71.98 0.60 -2.07 16 28 C -0.14 -1.35 8.85 71.98 0.64 -0.71 16 29 C -0.18 -2.69 8.37 71.98 0.60 -2.09 16 30 H 0.07 1.59 6.71 -2.38 -0.02 1.57 16 31 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.06 1.38 6.77 -2.39 -0.02 1.36 16 33 H 0.10 2.26 5.55 -2.39 -0.01 2.25 16 34 H 0.08 1.80 8.11 -2.39 -0.02 1.78 16 35 H 0.40 14.41 5.77 -92.71 -0.54 13.88 16 36 H -0.01 -0.92 8.14 -2.39 -0.02 -0.94 16 37 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 38 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 39 H 0.04 1.54 6.80 -2.39 -0.02 1.53 16 40 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.05 1.87 6.68 -2.39 -0.02 1.86 16 42 H 0.12 2.09 6.91 -2.38 -0.02 2.07 16 43 H 0.07 1.62 8.12 -2.39 -0.02 1.60 16 44 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 45 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.07 1.32 5.88 -2.39 -0.01 1.31 16 47 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 48 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 49 H 0.07 0.67 8.14 -2.38 -0.02 0.66 16 50 H 0.06 1.32 5.88 -2.39 -0.01 1.31 16 51 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 52 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -71.12 395.07 2.43 -68.70 By element: Atomic # 1 Polarization: 27.04 SS G_CDS: 0.38 Total: 27.42 kcal Atomic # 6 Polarization: 30.23 SS G_CDS: 7.87 Total: 38.10 kcal Atomic # 7 Polarization: -119.07 SS G_CDS: -7.48 Total: -126.54 kcal Atomic # 8 Polarization: -51.47 SS G_CDS: -0.37 Total: -51.84 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -71.12 2.43 -68.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787349520.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.570 kcal (2) G-P(sol) polarization free energy of solvation -71.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds