Wall clock time and date at job start Wed Apr 1 2020 01:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.61161 * 2 1 4 4 C 1.52931 * 109.61829 * 120.44332 * 2 1 3 5 5 N 1.46966 * 108.87489 * 70.57180 * 4 2 1 6 6 C 1.34778 * 120.59239 * 235.21305 * 5 4 2 7 7 O 1.21506 * 119.99906 * 174.69240 * 6 5 4 8 8 O 1.34641 * 120.00212 * 354.41019 * 6 5 4 9 9 C 1.45199 * 117.00179 * 180.27923 * 8 6 5 10 10 C 1.52993 * 109.46918 * 60.00030 * 9 8 6 11 11 C 1.52999 * 109.46982 * 180.02562 * 9 8 6 12 12 C 1.53003 * 109.46572 * 300.00028 * 9 8 6 13 13 C 1.46965 * 118.81191 * 54.93550 * 5 4 2 14 14 H 1.08998 * 109.60767 * 64.77227 * 13 5 4 15 15 C 1.52998 * 109.60867 * 185.10963 * 13 5 4 16 16 C 1.53373 * 108.63275 * 305.02424 * 13 5 4 17 17 N 1.46965 * 109.60932 * 239.65782 * 2 1 3 18 18 C 1.34777 * 120.59437 * 115.33149 * 17 2 1 19 19 O 1.21588 * 119.99920 * 5.16859 * 18 17 2 20 20 N 1.34775 * 120.00010 * 185.16149 * 18 17 2 21 21 C 1.46503 * 120.00203 * 175.02021 * 20 18 17 22 22 C 1.50697 * 109.47523 * 180.02562 * 21 20 18 23 23 H 1.08007 * 119.99912 * 0.02562 * 22 21 20 24 24 C 1.37877 * 120.00125 * 179.97438 * 22 21 20 25 25 N 1.31513 * 119.99465 * 179.97438 * 24 22 21 26 26 Si 1.86793 * 119.99767 * 0.02562 * 24 22 21 27 27 H 1.48498 * 109.47079 * 89.99944 * 26 24 22 28 28 H 1.48502 * 109.47041 * 209.99642 * 26 24 22 29 29 H 1.48495 * 109.47340 * 329.99681 * 26 24 22 30 30 H 1.09005 * 109.47015 * 180.34155 * 1 2 3 31 31 H 1.08998 * 109.47244 * 300.34413 * 1 2 3 32 32 H 1.08999 * 109.46823 * 60.34431 * 1 2 3 33 33 H 1.09008 * 109.52331 * 310.73252 * 4 2 1 34 34 H 1.08999 * 109.46113 * 190.37347 * 4 2 1 35 35 H 1.08999 * 109.47412 * 60.00747 * 10 9 8 36 36 H 1.09002 * 109.46701 * 180.02562 * 10 9 8 37 37 H 1.08996 * 109.47700 * 299.99945 * 10 9 8 38 38 H 1.08999 * 109.47395 * 60.00076 * 11 9 8 39 39 H 1.09002 * 109.46957 * 179.97438 * 11 9 8 40 40 H 1.08999 * 109.46872 * 299.99545 * 11 9 8 41 41 H 1.08996 * 109.47151 * 60.00603 * 12 9 8 42 42 H 1.09002 * 109.46813 * 180.02562 * 12 9 8 43 43 H 1.08999 * 109.47680 * 299.99848 * 12 9 8 44 44 H 1.09001 * 109.46976 * 57.96648 * 15 13 5 45 45 H 1.08998 * 109.46781 * 177.96626 * 15 13 5 46 46 H 1.09001 * 109.47342 * 297.97008 * 15 13 5 47 47 H 1.09000 * 109.60347 * 169.16555 * 16 13 5 48 48 H 1.08997 * 109.61213 * 289.51216 * 16 13 5 49 49 H 0.97006 * 120.00396 * 355.02571 * 20 18 17 50 50 H 1.08994 * 109.46907 * 300.01047 * 21 20 18 51 51 H 1.09004 * 109.46671 * 60.00341 * 21 20 18 52 52 H 0.97001 * 119.99362 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8958 1.0267 0.0000 4 6 2.0435 -0.7299 1.2419 5 7 1.7674 -2.1661 1.0974 6 6 1.0695 -2.8288 2.0410 7 8 0.7642 -3.9918 1.8662 8 8 0.7155 -2.2038 3.1798 9 6 -0.0295 -2.9808 4.1541 10 6 0.8044 -4.1874 4.5895 11 6 -0.3402 -2.1086 5.3721 12 6 -1.3384 -3.4650 3.5269 13 6 2.2606 -2.8655 -0.0974 14 1 3.3506 -2.8629 -0.0989 15 6 1.7506 -4.3080 -0.0951 16 6 1.7423 -2.1344 -1.3420 17 7 2.0232 -0.6994 -1.1948 18 6 2.7210 -0.0367 -2.1384 19 8 3.0287 1.1264 -1.9624 20 7 3.0779 -0.6632 -3.2770 21 6 3.7400 0.0851 -4.3484 22 6 4.0302 -0.8398 -5.5022 23 1 3.7490 -1.8810 -5.4435 24 6 4.6536 -0.3567 -6.6331 25 7 4.9071 -1.1641 -7.6398 26 14 5.1391 1.4441 -6.7348 27 1 6.5154 1.6164 -6.2043 28 1 5.0951 1.8895 -8.1508 29 1 4.1930 2.2581 -5.9303 30 1 -0.3633 -1.0277 0.0061 31 1 -0.3633 0.5192 0.8869 32 1 -0.3633 0.5085 -0.8931 33 1 1.5343 -0.3466 2.1263 34 1 3.1176 -0.5717 1.3380 35 1 1.7368 -3.8424 5.0364 36 1 0.2449 -4.7709 5.3206 37 1 1.0254 -4.8086 3.7216 38 1 -0.9345 -1.2493 5.0616 39 1 -0.9000 -2.6919 6.1034 40 1 0.5921 -1.7634 5.8190 41 1 -1.1174 -4.0863 2.6590 42 1 -1.8980 -4.0480 4.2584 43 1 -1.9326 -2.6055 3.2167 44 1 0.6611 -4.3081 -0.0632 45 1 2.0877 -4.8139 -0.9998 46 1 2.1398 -4.8296 0.7793 47 1 2.2484 -2.5172 -2.2283 48 1 0.6679 -2.2915 -1.4377 49 1 2.8962 -1.6097 -3.3873 50 1 3.0884 0.8916 -4.6845 51 1 4.6742 0.5046 -3.9748 52 1 5.3460 -0.8243 -8.4353 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787349522.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:37:32 Heat of formation + Delta-G solvation = -81.497837 kcal Electronic energy + Delta-G solvation = -32149.976375 eV Core-core repulsion = 27958.054194 eV Total energy + Delta-G solvation = -4191.922181 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.37324 -40.05318 -38.36128 -36.77212 -34.70543 -34.52554 -33.89723 -33.21128 -32.17291 -30.09143 -27.74319 -27.66677 -27.66064 -26.61766 -26.33993 -23.55155 -22.70913 -21.51825 -20.93318 -19.88700 -19.02479 -18.43014 -17.31361 -16.82881 -16.48167 -16.37857 -15.94139 -15.65660 -15.23413 -14.91202 -14.77180 -14.44442 -14.36458 -14.03558 -13.82432 -13.61747 -13.47036 -12.99907 -12.91582 -12.66608 -12.51455 -12.42321 -12.31663 -12.24189 -12.14543 -12.05737 -11.97313 -11.89145 -11.70935 -11.66892 -11.35037 -11.21592 -11.03893 -10.94922 -10.76771 -10.55762 -9.97030 -9.61774 -9.46963 -9.45400 -9.23091 -8.77934 -8.42506 -7.97098 -6.20999 -4.22993 1.88144 2.66037 2.96034 3.27785 3.34731 3.43027 3.56626 3.68473 4.32972 4.36857 4.41958 4.46371 4.59208 4.61225 4.72238 4.83722 4.90507 5.05530 5.12392 5.14812 5.15584 5.23091 5.27202 5.34835 5.38045 5.40155 5.47135 5.47991 5.56134 5.59087 5.67593 5.70390 5.72333 5.88055 5.98779 5.99426 6.00885 6.08968 6.19779 6.24110 6.44819 6.58041 6.77515 7.10530 7.18349 7.24509 7.35852 7.47741 8.18015 8.24189 8.62682 8.78228 9.13437 9.39918 10.90918 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.025410 B = 0.002515 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.661621 B =11131.188257 C =11776.939283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.141 3.859 3 H 0.114 0.886 4 C 0.104 3.896 5 N -0.588 5.588 6 C 0.655 3.345 7 O -0.562 6.562 8 O -0.366 6.366 9 C 0.137 3.863 10 C -0.182 4.182 11 C -0.141 4.141 12 C -0.182 4.182 13 C 0.146 3.854 14 H 0.083 0.917 15 C -0.137 4.137 16 C 0.101 3.899 17 N -0.633 5.633 18 C 0.701 3.299 19 O -0.599 6.599 20 N -0.722 5.722 21 C 0.238 3.762 22 C -0.542 4.542 23 H 0.079 0.921 24 C 0.078 3.922 25 N -0.892 5.892 26 Si 0.877 3.123 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.260 1.260 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.101 0.899 34 H 0.076 0.924 35 H 0.058 0.942 36 H 0.068 0.932 37 H 0.088 0.912 38 H 0.066 0.934 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.088 0.912 42 H 0.067 0.933 43 H 0.058 0.942 44 H 0.075 0.925 45 H 0.052 0.948 46 H 0.076 0.924 47 H 0.096 0.904 48 H 0.073 0.927 49 H 0.391 0.609 50 H 0.022 0.978 51 H 0.020 0.980 52 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.540 -4.923 25.620 28.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.036 3.964 3 H 0.132 0.868 4 C -0.020 4.020 5 N -0.329 5.329 6 C 0.410 3.590 7 O -0.452 6.452 8 O -0.281 6.281 9 C 0.100 3.900 10 C -0.240 4.240 11 C -0.198 4.198 12 C -0.239 4.239 13 C 0.043 3.957 14 H 0.101 0.899 15 C -0.194 4.194 16 C -0.024 4.024 17 N -0.372 5.372 18 C 0.402 3.598 19 O -0.478 6.478 20 N -0.376 5.376 21 C 0.115 3.885 22 C -0.580 4.580 23 H 0.097 0.903 24 C -0.126 4.126 25 N -0.530 5.530 26 Si 0.704 3.296 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.185 1.185 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.119 0.881 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.107 0.893 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.107 0.893 42 H 0.086 0.914 43 H 0.077 0.923 44 H 0.094 0.906 45 H 0.071 0.929 46 H 0.095 0.905 47 H 0.114 0.886 48 H 0.091 0.909 49 H 0.227 0.773 50 H 0.040 0.960 51 H 0.037 0.963 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.340 -4.418 25.501 28.256 hybrid contribution 0.225 0.379 -0.267 0.516 sum -11.115 -4.038 25.234 27.867 Atomic orbital electron populations 1.22078 0.94973 1.02109 1.02401 1.21262 0.94093 0.97899 0.83128 0.86810 1.22127 1.01809 0.79136 0.98909 1.46937 1.55899 1.09975 1.20051 1.18054 0.77759 0.83245 0.79930 1.90955 1.58894 1.15914 1.79406 1.86300 1.69575 1.45191 1.27028 1.22020 0.90692 0.90947 0.86327 1.22506 0.99947 0.98041 1.03464 1.21858 1.02592 1.00076 0.95274 1.22505 0.95808 1.02415 1.03218 1.21727 0.98665 0.93014 0.82320 0.89938 1.22225 1.03103 0.92438 1.01675 1.22092 1.01551 0.80995 0.97741 1.47287 1.58885 1.08757 1.22246 1.16008 0.78684 0.84770 0.80317 1.90852 1.61170 1.16099 1.79691 1.45584 1.63080 1.13159 1.15754 1.19376 0.92160 0.92580 0.84369 1.21072 1.40726 0.97268 0.98948 0.90343 1.24778 0.94679 0.98050 0.95106 1.69882 1.41548 1.35500 1.06040 0.86806 0.79921 0.85291 0.77600 1.19853 1.20962 1.18479 0.92669 0.91601 0.91925 0.88095 0.90612 0.92313 0.91340 0.89295 0.91491 0.90280 0.91528 0.89287 0.91357 0.92264 0.90586 0.92914 0.90510 0.88582 0.90850 0.77287 0.95982 0.96251 0.92274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 9.13 37.16 0.34 -1.36 16 2 C 0.14 1.74 3.22 -67.71 -0.22 1.52 16 3 H 0.11 1.57 6.99 -51.93 -0.36 1.20 16 4 C 0.10 1.09 5.94 -3.82 -0.02 1.06 16 5 N -0.59 -6.47 2.62 -170.96 -0.45 -6.92 16 6 C 0.65 7.46 7.64 54.06 0.41 7.87 16 7 O -0.56 -6.89 7.26 -19.28 -0.14 -7.03 16 8 O -0.37 -3.77 8.54 -40.33 -0.34 -4.11 16 9 C 0.14 1.14 1.13 -90.62 -0.10 1.04 16 10 C -0.18 -1.49 8.37 37.15 0.31 -1.18 16 11 C -0.14 -0.84 8.85 37.16 0.33 -0.52 16 12 C -0.18 -1.49 8.37 37.16 0.31 -1.18 16 13 C 0.15 1.61 3.64 -67.49 -0.25 1.37 16 14 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 15 C -0.14 -1.45 7.59 37.16 0.28 -1.17 16 16 C 0.10 1.22 5.46 -3.59 -0.02 1.20 16 17 N -0.63 -9.24 2.67 -170.89 -0.46 -9.69 16 18 C 0.70 13.63 8.29 -86.92 -0.72 12.91 16 19 O -0.60 -13.76 15.76 5.29 0.08 -13.68 16 20 N -0.72 -14.77 5.46 -66.41 -0.36 -15.13 16 21 C 0.24 5.86 4.50 -5.19 -0.02 5.84 16 22 C -0.54 -14.78 9.83 -34.44 -0.34 -15.12 16 23 H 0.08 2.22 7.84 -52.48 -0.41 1.81 16 24 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 25 N -0.89 -26.37 13.96 55.43 0.77 -25.60 16 26 Si 0.88 21.42 27.47 -169.99 -4.67 16.75 16 27 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 28 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 29 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 30 H 0.05 0.61 7.04 -51.93 -0.37 0.25 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.10 0.91 6.92 -51.92 -0.36 0.55 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.09 0.91 5.88 -51.93 -0.31 0.61 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.09 0.92 5.88 -51.93 -0.31 0.61 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.08 0.88 6.77 -51.93 -0.35 0.53 16 45 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.08 0.89 6.71 -51.93 -0.35 0.54 16 47 H 0.10 1.15 5.61 -51.93 -0.29 0.86 16 48 H 0.07 0.84 7.39 -51.93 -0.38 0.46 16 49 H 0.39 7.10 5.80 -40.82 -0.24 6.86 16 50 H 0.02 0.58 7.20 -51.93 -0.37 0.20 16 51 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 52 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 395.54 15.07 5.96 5.96 Total: -1.00 -32.34 395.54 -8.13 -40.48 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -8.73 Total: 4.60 kcal Atomic # 6 Polarization: 14.18 SS G_CDS: 0.20 Total: 14.38 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: -0.49 Total: -57.35 kcal Atomic # 8 Polarization: -24.42 SS G_CDS: -0.40 Total: -24.82 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.34 -8.13 -40.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787349522.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.021 kcal (2) G-P(sol) polarization free energy of solvation -32.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds