Wall clock time and date at job start Wed Apr 1 2020 01:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.61161 * 2 1 4 4 C 1.52931 * 109.61829 * 120.44332 * 2 1 3 5 5 N 1.46966 * 108.87489 * 70.57180 * 4 2 1 6 6 C 1.34778 * 120.59239 * 235.21305 * 5 4 2 7 7 O 1.21506 * 119.99906 * 174.69240 * 6 5 4 8 8 O 1.34641 * 120.00212 * 354.41019 * 6 5 4 9 9 C 1.45199 * 117.00179 * 180.27923 * 8 6 5 10 10 C 1.52993 * 109.46918 * 60.00030 * 9 8 6 11 11 C 1.52999 * 109.46982 * 180.02562 * 9 8 6 12 12 C 1.53003 * 109.46572 * 300.00028 * 9 8 6 13 13 C 1.46965 * 118.81191 * 54.93550 * 5 4 2 14 14 H 1.08998 * 109.60767 * 64.77227 * 13 5 4 15 15 C 1.52998 * 109.60867 * 185.10963 * 13 5 4 16 16 C 1.53373 * 108.63275 * 305.02424 * 13 5 4 17 17 N 1.46965 * 109.60932 * 239.65782 * 2 1 3 18 18 C 1.34777 * 120.59437 * 115.33149 * 17 2 1 19 19 O 1.21588 * 119.99920 * 5.16859 * 18 17 2 20 20 N 1.34775 * 120.00010 * 185.16149 * 18 17 2 21 21 C 1.46503 * 120.00203 * 175.02021 * 20 18 17 22 22 C 1.50697 * 109.47523 * 180.02562 * 21 20 18 23 23 H 1.08007 * 119.99912 * 0.02562 * 22 21 20 24 24 C 1.37877 * 120.00125 * 179.97438 * 22 21 20 25 25 N 1.31513 * 119.99465 * 179.97438 * 24 22 21 26 26 Si 1.86793 * 119.99767 * 0.02562 * 24 22 21 27 27 H 1.48498 * 109.47079 * 89.99944 * 26 24 22 28 28 H 1.48502 * 109.47041 * 209.99642 * 26 24 22 29 29 H 1.48495 * 109.47340 * 329.99681 * 26 24 22 30 30 H 1.09005 * 109.47015 * 180.34155 * 1 2 3 31 31 H 1.08998 * 109.47244 * 300.34413 * 1 2 3 32 32 H 1.08999 * 109.46823 * 60.34431 * 1 2 3 33 33 H 1.09008 * 109.52331 * 310.73252 * 4 2 1 34 34 H 1.08999 * 109.46113 * 190.37347 * 4 2 1 35 35 H 1.08999 * 109.47412 * 60.00747 * 10 9 8 36 36 H 1.09002 * 109.46701 * 180.02562 * 10 9 8 37 37 H 1.08996 * 109.47700 * 299.99945 * 10 9 8 38 38 H 1.08999 * 109.47395 * 60.00076 * 11 9 8 39 39 H 1.09002 * 109.46957 * 179.97438 * 11 9 8 40 40 H 1.08999 * 109.46872 * 299.99545 * 11 9 8 41 41 H 1.08996 * 109.47151 * 60.00603 * 12 9 8 42 42 H 1.09002 * 109.46813 * 180.02562 * 12 9 8 43 43 H 1.08999 * 109.47680 * 299.99848 * 12 9 8 44 44 H 1.09001 * 109.46976 * 57.96648 * 15 13 5 45 45 H 1.08998 * 109.46781 * 177.96626 * 15 13 5 46 46 H 1.09001 * 109.47342 * 297.97008 * 15 13 5 47 47 H 1.09000 * 109.60347 * 169.16555 * 16 13 5 48 48 H 1.08997 * 109.61213 * 289.51216 * 16 13 5 49 49 H 0.97006 * 120.00396 * 355.02571 * 20 18 17 50 50 H 1.08994 * 109.46907 * 300.01047 * 21 20 18 51 51 H 1.09004 * 109.46671 * 60.00341 * 21 20 18 52 52 H 0.97001 * 119.99362 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8958 1.0267 0.0000 4 6 2.0435 -0.7299 1.2419 5 7 1.7674 -2.1661 1.0974 6 6 1.0695 -2.8288 2.0410 7 8 0.7642 -3.9918 1.8662 8 8 0.7155 -2.2038 3.1798 9 6 -0.0295 -2.9808 4.1541 10 6 0.8044 -4.1874 4.5895 11 6 -0.3402 -2.1086 5.3721 12 6 -1.3384 -3.4650 3.5269 13 6 2.2606 -2.8655 -0.0974 14 1 3.3506 -2.8629 -0.0989 15 6 1.7506 -4.3080 -0.0951 16 6 1.7423 -2.1344 -1.3420 17 7 2.0232 -0.6994 -1.1948 18 6 2.7210 -0.0367 -2.1384 19 8 3.0287 1.1264 -1.9624 20 7 3.0779 -0.6632 -3.2770 21 6 3.7400 0.0851 -4.3484 22 6 4.0302 -0.8398 -5.5022 23 1 3.7490 -1.8810 -5.4435 24 6 4.6536 -0.3567 -6.6331 25 7 4.9071 -1.1641 -7.6398 26 14 5.1391 1.4441 -6.7348 27 1 6.5154 1.6164 -6.2043 28 1 5.0951 1.8895 -8.1508 29 1 4.1930 2.2581 -5.9303 30 1 -0.3633 -1.0277 0.0061 31 1 -0.3633 0.5192 0.8869 32 1 -0.3633 0.5085 -0.8931 33 1 1.5343 -0.3466 2.1263 34 1 3.1176 -0.5717 1.3380 35 1 1.7368 -3.8424 5.0364 36 1 0.2449 -4.7709 5.3206 37 1 1.0254 -4.8086 3.7216 38 1 -0.9345 -1.2493 5.0616 39 1 -0.9000 -2.6919 6.1034 40 1 0.5921 -1.7634 5.8190 41 1 -1.1174 -4.0863 2.6590 42 1 -1.8980 -4.0480 4.2584 43 1 -1.9326 -2.6055 3.2167 44 1 0.6611 -4.3081 -0.0632 45 1 2.0877 -4.8139 -0.9998 46 1 2.1398 -4.8296 0.7793 47 1 2.2484 -2.5172 -2.2283 48 1 0.6679 -2.2915 -1.4377 49 1 2.8962 -1.6097 -3.3873 50 1 3.0884 0.8916 -4.6845 51 1 4.6742 0.5046 -3.9748 52 1 5.3460 -0.8243 -8.4353 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787349522.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:37:31 Heat of formation + Delta-G solvation = -101.919894 kcal Electronic energy + Delta-G solvation = -32150.861942 eV Core-core repulsion = 27958.054194 eV Total energy + Delta-G solvation = -4192.807748 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.29499 -41.26759 -39.45665 -37.77414 -36.28328 -35.55384 -34.92017 -34.62212 -33.78895 -31.22731 -29.51737 -28.29225 -28.24611 -27.55160 -27.38638 -24.55795 -24.31617 -22.69240 -22.12220 -20.92860 -20.34799 -19.56124 -18.61082 -18.14955 -17.58064 -17.32248 -17.29303 -16.66592 -16.48189 -16.39482 -15.73242 -15.62038 -15.49539 -15.15513 -14.94873 -14.81879 -14.53648 -14.43657 -14.10445 -13.90863 -13.71673 -13.26524 -13.18925 -13.08956 -13.05234 -13.02639 -12.89650 -12.80018 -12.72095 -12.69323 -12.55378 -12.42729 -12.12161 -12.05722 -11.91570 -11.91326 -11.62369 -11.27073 -11.20749 -10.90337 -10.45860 -10.25766 -9.94349 -9.28547 -8.38270 -6.44948 1.03657 1.34817 1.36759 1.49737 1.69073 1.78528 2.14333 2.30054 2.76616 2.97430 3.00125 3.63250 3.67004 3.82096 3.87072 3.89007 3.96668 4.01877 4.11500 4.20564 4.39557 4.42525 4.55763 4.58965 4.67995 4.68422 4.71024 4.73231 4.81099 4.83308 4.86759 4.91213 4.93691 4.94529 5.06473 5.08927 5.12617 5.20397 5.25166 5.30517 5.35183 5.39915 5.47811 5.50565 5.53262 5.60182 5.88297 6.18632 6.36575 6.56329 7.05418 7.19896 7.32430 7.59605 8.76340 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.025410 B = 0.002515 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.661621 B =11131.188257 C =11776.939283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.137 3.863 3 H 0.100 0.900 4 C 0.112 3.888 5 N -0.590 5.590 6 C 0.653 3.347 7 O -0.572 6.572 8 O -0.369 6.369 9 C 0.128 3.872 10 C -0.178 4.178 11 C -0.136 4.136 12 C -0.178 4.178 13 C 0.150 3.850 14 H 0.081 0.919 15 C -0.124 4.124 16 C 0.101 3.899 17 N -0.623 5.623 18 C 0.701 3.299 19 O -0.636 6.636 20 N -0.723 5.723 21 C 0.252 3.748 22 C -0.544 4.544 23 H 0.059 0.941 24 C 0.027 3.973 25 N -0.930 5.930 26 Si 0.938 3.062 27 H -0.265 1.265 28 H -0.274 1.274 29 H -0.260 1.260 30 H 0.053 0.947 31 H 0.089 0.911 32 H 0.048 0.952 33 H 0.121 0.879 34 H 0.074 0.926 35 H 0.057 0.943 36 H 0.087 0.913 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.099 0.901 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.086 0.914 43 H 0.059 0.941 44 H 0.067 0.933 45 H 0.063 0.937 46 H 0.067 0.933 47 H 0.096 0.904 48 H 0.084 0.916 49 H 0.402 0.598 50 H 0.010 0.990 51 H 0.010 0.990 52 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.443 -4.536 27.719 30.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.033 3.967 3 H 0.118 0.882 4 C -0.011 4.011 5 N -0.330 5.330 6 C 0.409 3.591 7 O -0.463 6.463 8 O -0.284 6.284 9 C 0.091 3.909 10 C -0.235 4.235 11 C -0.193 4.193 12 C -0.235 4.235 13 C 0.047 3.953 14 H 0.099 0.901 15 C -0.182 4.182 16 C -0.023 4.023 17 N -0.360 5.360 18 C 0.402 3.598 19 O -0.518 6.518 20 N -0.378 5.378 21 C 0.128 3.872 22 C -0.582 4.582 23 H 0.077 0.923 24 C -0.173 4.173 25 N -0.569 5.569 26 Si 0.761 3.239 27 H -0.190 1.190 28 H -0.199 1.199 29 H -0.184 1.184 30 H 0.072 0.928 31 H 0.108 0.892 32 H 0.067 0.933 33 H 0.139 0.861 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.105 0.895 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.117 0.883 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.105 0.895 43 H 0.078 0.922 44 H 0.086 0.914 45 H 0.082 0.918 46 H 0.086 0.914 47 H 0.114 0.886 48 H 0.102 0.898 49 H 0.240 0.760 50 H 0.028 0.972 51 H 0.028 0.972 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.279 -4.075 27.652 30.529 hybrid contribution 0.433 0.150 -0.826 0.945 sum -11.845 -3.925 26.825 29.586 Atomic orbital electron populations 1.21990 0.93414 1.02146 1.02924 1.21471 0.95192 0.97277 0.82783 0.88178 1.22074 1.01871 0.78670 0.98470 1.46943 1.55925 1.10106 1.20043 1.18120 0.77622 0.83149 0.80235 1.90966 1.59173 1.16416 1.79700 1.86304 1.69723 1.45547 1.26795 1.22339 0.90427 0.91463 0.86640 1.22456 1.00304 0.97903 1.02886 1.21876 1.02990 1.00049 0.94414 1.22450 0.95987 1.02243 1.02799 1.21650 0.98553 0.93151 0.81946 0.90073 1.22074 1.02360 0.91954 1.01782 1.22236 1.02276 0.79381 0.98415 1.47292 1.57310 1.09728 1.21660 1.16070 0.78781 0.84369 0.80553 1.90821 1.62670 1.17801 1.80506 1.45317 1.63348 1.13555 1.15571 1.18957 0.91753 0.91932 0.84589 1.21248 1.40209 0.96857 0.99887 0.92312 1.25569 0.94757 1.02158 0.94840 1.69981 1.42662 1.37482 1.06801 0.85856 0.79755 0.80257 0.78009 1.19031 1.19897 1.18416 0.92773 0.89210 0.93257 0.86129 0.90797 0.92358 0.89464 0.91631 0.91215 0.88287 0.91400 0.91638 0.89533 0.92162 0.91430 0.91801 0.91415 0.88562 0.89781 0.76035 0.97176 0.97206 0.91870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 9.13 71.98 0.66 -2.25 16 2 C 0.14 3.22 3.22 44.88 0.14 3.36 16 3 H 0.10 2.70 6.99 -2.39 -0.02 2.68 16 4 C 0.11 2.17 5.94 86.27 0.51 2.68 16 5 N -0.59 -12.17 2.62 -925.20 -2.42 -14.59 16 6 C 0.65 14.02 7.64 129.79 0.99 15.01 16 7 O -0.57 -13.61 7.26 19.82 0.14 -13.46 16 8 O -0.37 -6.91 8.54 -55.50 -0.47 -7.38 16 9 C 0.13 1.86 1.13 -10.80 -0.01 1.85 16 10 C -0.18 -2.63 8.37 71.98 0.60 -2.02 16 11 C -0.14 -1.25 8.85 71.98 0.64 -0.61 16 12 C -0.18 -2.58 8.37 71.98 0.60 -1.97 16 13 C 0.15 3.17 3.64 45.03 0.16 3.33 16 14 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 15 C -0.12 -2.51 7.59 71.98 0.55 -1.97 16 16 C 0.10 2.33 5.46 86.41 0.47 2.80 16 17 N -0.62 -17.73 2.67 -812.83 -2.17 -19.90 16 18 C 0.70 27.15 8.29 179.05 1.49 28.64 16 19 O -0.64 -29.31 15.76 -3.99 -0.06 -29.37 16 20 N -0.72 -29.61 5.46 -482.30 -2.63 -32.25 16 21 C 0.25 12.46 4.50 85.63 0.39 12.85 16 22 C -0.54 -29.99 9.83 25.60 0.25 -29.74 16 23 H 0.06 3.39 7.84 -2.91 -0.02 3.37 16 24 C 0.03 1.53 5.47 84.65 0.46 1.99 16 25 N -0.93 -55.41 13.96 21.45 0.30 -55.11 16 26 Si 0.94 44.09 27.47 68.60 1.88 45.98 16 27 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 28 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 29 H -0.26 -12.13 6.54 99.48 0.65 -11.48 16 30 H 0.05 1.10 7.04 -2.38 -0.02 1.08 16 31 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.12 1.89 6.92 -2.38 -0.02 1.87 16 34 H 0.07 1.48 8.14 -2.39 -0.02 1.47 16 35 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.06 1.30 5.88 -2.39 -0.01 1.29 16 38 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.06 1.29 5.88 -2.39 -0.01 1.27 16 42 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.07 1.50 6.77 -2.39 -0.02 1.48 16 45 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.07 1.52 6.71 -2.39 -0.02 1.51 16 47 H 0.10 2.23 5.61 -2.39 -0.01 2.22 16 48 H 0.08 1.82 7.39 -2.39 -0.02 1.80 16 49 H 0.40 14.57 5.80 -92.70 -0.54 14.03 16 50 H 0.01 0.54 7.20 -2.39 -0.02 0.52 16 51 H 0.01 0.52 7.57 -2.38 -0.02 0.50 16 52 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -69.56 395.54 2.80 -66.76 By element: Atomic # 1 Polarization: 25.06 SS G_CDS: 0.32 Total: 25.39 kcal Atomic # 6 Polarization: 26.04 SS G_CDS: 7.90 Total: 33.94 kcal Atomic # 7 Polarization: -114.93 SS G_CDS: -6.92 Total: -121.86 kcal Atomic # 8 Polarization: -49.82 SS G_CDS: -0.39 Total: -50.22 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 1.88 Total: 45.98 kcal Total: -69.56 2.80 -66.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787349522.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.158 kcal (2) G-P(sol) polarization free energy of solvation -69.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds