Wall clock time and date at job start Wed Apr 1 2020 01:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.58810 * 2 1 4 4 C 1.53194 * 109.70465 * 239.64233 * 2 1 3 5 5 H 1.09000 * 109.50041 * 65.55559 * 4 2 1 6 6 N 1.46508 * 109.49395 * 305.45839 * 4 2 1 7 7 C 1.34778 * 119.99439 * 154.99711 * 6 4 2 8 8 O 1.21585 * 120.00429 * 0.02562 * 7 6 4 9 9 N 1.34774 * 119.99514 * 179.97438 * 7 6 4 10 10 C 1.46502 * 119.99813 * 180.02562 * 9 7 6 11 11 C 1.50700 * 109.47279 * 180.02562 * 10 9 7 12 12 H 1.08009 * 119.99995 * 359.97438 * 11 10 9 13 13 C 1.37873 * 120.00415 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99871 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 120.00467 * 179.97438 * 13 11 10 16 16 H 1.48510 * 109.47190 * 59.99844 * 15 13 11 17 17 H 1.48501 * 109.47758 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47363 * 300.00313 * 15 13 11 19 19 C 1.53039 * 109.31385 * 185.50705 * 4 2 1 20 20 C 1.53360 * 109.60679 * 61.37506 * 19 4 2 21 21 C 1.53193 * 109.14549 * 298.71039 * 20 19 4 22 22 N 1.46921 * 108.89439 * 54.57952 * 21 20 19 23 23 C 1.34781 * 120.62936 * 126.29325 * 22 21 20 24 24 O 1.21515 * 119.99521 * 174.30843 * 23 22 21 25 25 O 1.34635 * 120.00204 * 354.31676 * 23 22 21 26 26 C 1.45198 * 116.99954 * 179.97438 * 25 23 22 27 27 C 1.53001 * 109.47324 * 59.99913 * 26 25 23 28 28 C 1.52997 * 109.47169 * 179.97438 * 26 25 23 29 29 C 1.52996 * 109.47202 * 299.99715 * 26 25 23 30 30 H 1.08999 * 109.46910 * 307.12885 * 1 2 3 31 31 H 1.08998 * 109.47262 * 67.13476 * 1 2 3 32 32 H 1.08998 * 109.47244 * 187.13436 * 1 2 3 33 33 H 0.96993 * 120.00322 * 335.00162 * 6 4 2 34 34 H 0.97005 * 120.00555 * 0.02562 * 9 7 6 35 35 H 1.09000 * 109.46789 * 299.99830 * 10 9 7 36 36 H 1.09003 * 109.47532 * 59.99838 * 10 9 7 37 37 H 0.97001 * 119.99780 * 180.02562 * 14 13 11 38 38 H 1.08997 * 109.45817 * 181.38051 * 19 4 2 39 39 H 1.08993 * 109.46416 * 301.34441 * 19 4 2 40 40 H 1.08996 * 109.68103 * 178.74547 * 20 19 4 41 41 H 1.08994 * 109.47176 * 58.55068 * 20 19 4 42 42 H 1.09002 * 109.58849 * 294.71620 * 21 20 19 43 43 H 1.09007 * 109.58322 * 174.43495 * 21 20 19 44 44 H 1.09001 * 109.47326 * 59.99511 * 27 26 25 45 45 H 1.08992 * 109.47379 * 180.02562 * 27 26 25 46 46 H 1.08999 * 109.46882 * 300.00159 * 27 26 25 47 47 H 1.09008 * 109.47190 * 59.99897 * 28 26 25 48 48 H 1.08997 * 109.47368 * 179.97438 * 28 26 25 49 49 H 1.09001 * 109.47288 * 300.00016 * 28 26 25 50 50 H 1.09003 * 109.47320 * 60.00185 * 29 26 25 51 51 H 1.09004 * 109.47647 * 180.02562 * 29 26 25 52 52 H 1.09001 * 109.47517 * 300.00377 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0465 -0.7289 -1.2445 5 1 1.7689 -0.1673 -2.1365 6 7 1.4571 -2.0688 -1.3062 7 6 1.3367 -2.6979 -2.4920 8 8 1.7177 -2.1538 -3.5104 9 7 0.7950 -3.9307 -2.5488 10 6 0.6646 -4.6149 -3.8376 11 6 0.0329 -5.9668 -3.6271 12 1 -0.2435 -6.2848 -2.6326 13 6 -0.1923 -6.7978 -4.7040 14 7 0.1447 -6.4108 -5.9149 15 14 -0.9747 -8.4738 -4.4430 16 1 -2.3185 -8.3034 -3.8341 17 1 -1.1070 -9.1673 -5.7494 18 1 -0.1203 -9.2834 -3.5376 19 6 3.5706 -0.8444 -1.1674 20 6 3.9628 -1.6625 0.0691 21 6 3.4654 -0.9424 1.3264 22 7 2.0226 -0.6980 1.1954 23 6 1.1671 -1.1068 2.1533 24 8 -0.0090 -0.8090 2.0847 25 8 1.6156 -1.8448 3.1861 26 6 0.6382 -2.2493 4.1808 27 6 -0.4491 -3.0939 3.5135 28 6 1.3288 -3.0747 5.2683 29 6 0.0048 -1.0060 4.8085 30 1 -0.3633 0.6203 0.8193 31 1 -0.3634 0.3993 -0.9469 32 1 -0.3633 -1.0197 0.1276 33 1 1.1534 -2.5029 -0.4938 34 1 0.4913 -4.3650 -1.7362 35 1 0.0376 -4.0208 -4.5025 36 1 1.6511 -4.7400 -4.2841 37 1 -0.0141 -6.9953 -6.6726 38 1 3.9429 -1.3409 -2.0634 39 1 4.0071 0.1518 -1.0965 40 1 5.0471 -1.7643 0.1130 41 1 3.5062 -2.6504 0.0109 42 1 3.9887 0.0077 1.4346 43 1 3.6526 -1.5644 2.2018 44 1 0.0021 -3.9796 3.0663 45 1 -1.1830 -3.3971 4.2600 46 1 -0.9412 -2.5062 2.7385 47 1 2.1037 -2.4733 5.7438 48 1 0.5952 -3.3779 6.0152 49 1 1.7797 -3.9604 4.8209 50 1 -0.4873 -0.4183 4.0335 51 1 -0.7286 -1.3096 5.5555 52 1 0.7794 -0.4042 5.2839 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787351434.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:05:45 Heat of formation + Delta-G solvation = -126.056781 kcal Electronic energy + Delta-G solvation = -32263.436291 eV Core-core repulsion = 28069.581889 eV Total energy + Delta-G solvation = -4193.854402 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.25238 -41.06816 -39.64250 -37.68612 -36.19700 -35.62549 -34.70221 -34.29929 -33.70559 -32.08855 -29.22178 -28.30163 -28.25624 -28.15518 -25.80605 -24.85502 -23.83302 -22.70625 -22.07578 -21.01446 -20.14494 -19.84730 -18.47445 -18.14048 -17.67137 -17.37745 -17.05395 -16.65697 -16.49475 -16.05590 -15.75095 -15.56996 -15.29208 -15.12846 -15.02202 -14.70489 -14.52754 -14.38855 -14.02930 -14.00018 -13.72763 -13.56431 -13.16538 -13.04990 -12.99473 -12.93692 -12.82552 -12.73840 -12.69012 -12.46021 -12.39169 -12.24288 -12.14402 -11.91504 -11.83202 -11.64537 -11.50885 -11.26909 -11.21573 -10.80059 -10.37427 -10.22293 -9.73496 -9.52616 -8.29193 -6.45775 1.13544 1.41668 1.46198 1.54249 1.82126 1.88642 2.26712 2.38591 2.83578 3.05383 3.48079 3.59511 3.76402 3.81925 3.86359 3.90401 4.01156 4.05802 4.23997 4.30669 4.44400 4.57288 4.66717 4.67241 4.70429 4.74473 4.77666 4.82494 4.87841 4.91414 4.93847 5.04292 5.05357 5.08459 5.15877 5.23591 5.26828 5.28709 5.33968 5.34594 5.40044 5.47558 5.53336 5.57640 5.61752 5.70209 5.84719 6.20476 6.40433 6.65357 7.22703 7.27259 7.35981 7.72568 8.82911 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.011016 B = 0.003167 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2541.159398 B = 8839.004711 C =10378.826406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.163 3.837 3 H 0.121 0.879 4 C 0.149 3.851 5 H 0.083 0.917 6 N -0.721 5.721 7 C 0.695 3.305 8 O -0.642 6.642 9 N -0.727 5.727 10 C 0.289 3.711 11 C -0.557 4.557 12 H 0.079 0.921 13 C 0.006 3.994 14 N -0.929 5.929 15 Si 0.985 3.015 16 H -0.264 1.264 17 H -0.283 1.283 18 H -0.262 1.262 19 C -0.129 4.129 20 C -0.127 4.127 21 C 0.116 3.884 22 N -0.592 5.592 23 C 0.646 3.354 24 O -0.575 6.575 25 O -0.367 6.367 26 C 0.129 3.871 27 C -0.182 4.182 28 C -0.136 4.136 29 C -0.176 4.176 30 H 0.077 0.923 31 H 0.046 0.954 32 H 0.048 0.952 33 H 0.397 0.603 34 H 0.399 0.601 35 H -0.015 1.015 36 H -0.014 1.014 37 H 0.269 0.731 38 H 0.043 0.957 39 H 0.103 0.897 40 H 0.096 0.904 41 H 0.045 0.955 42 H 0.098 0.902 43 H 0.096 0.904 44 H 0.055 0.945 45 H 0.085 0.915 46 H 0.064 0.936 47 H 0.072 0.928 48 H 0.097 0.903 49 H 0.064 0.936 50 H 0.065 0.935 51 H 0.084 0.916 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.751 12.418 26.419 29.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.061 3.939 3 H 0.139 0.861 4 C 0.043 3.957 5 H 0.101 0.899 6 N -0.377 5.377 7 C 0.395 3.605 8 O -0.525 6.525 9 N -0.380 5.380 10 C 0.166 3.834 11 C -0.595 4.595 12 H 0.097 0.903 13 C -0.194 4.194 14 N -0.568 5.568 15 Si 0.808 3.192 16 H -0.188 1.188 17 H -0.208 1.208 18 H -0.187 1.187 19 C -0.168 4.168 20 C -0.165 4.165 21 C -0.005 4.005 22 N -0.333 5.333 23 C 0.401 3.599 24 O -0.466 6.466 25 O -0.282 6.282 26 C 0.093 3.907 27 C -0.239 4.239 28 C -0.193 4.193 29 C -0.233 4.233 30 H 0.095 0.905 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.231 0.769 34 H 0.233 0.767 35 H 0.002 0.998 36 H 0.004 0.996 37 H 0.078 0.922 38 H 0.062 0.938 39 H 0.121 0.879 40 H 0.114 0.886 41 H 0.064 0.936 42 H 0.116 0.884 43 H 0.115 0.885 44 H 0.074 0.926 45 H 0.104 0.896 46 H 0.083 0.917 47 H 0.091 0.909 48 H 0.116 0.884 49 H 0.083 0.917 50 H 0.084 0.916 51 H 0.103 0.897 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.718 12.907 25.356 29.021 hybrid contribution -0.737 -1.285 -0.120 1.486 sum 4.981 11.622 25.237 28.227 Atomic orbital electron populations 1.22068 0.92792 1.02891 1.00905 1.21568 0.95694 0.95936 0.80688 0.86143 1.21385 0.93767 0.82222 0.98322 0.89855 1.44925 1.67239 1.18961 1.06588 1.16244 0.78690 0.81450 0.84120 1.90829 1.58189 1.68014 1.35431 1.45353 1.64959 1.16084 1.11652 1.18361 0.94151 0.90842 0.80028 1.21556 1.42094 1.00758 0.95120 0.90251 1.26043 0.95700 1.03370 0.94297 1.70134 1.47625 1.39133 0.99877 0.85214 0.79051 0.77359 0.77617 1.18820 1.20831 1.18659 1.21969 0.94213 1.02312 0.98257 1.21885 1.02297 0.98548 0.93816 1.21892 0.77998 1.02041 0.98603 1.47141 1.07675 1.59464 1.18986 1.18261 0.83836 0.77636 0.80151 1.90976 1.16656 1.61013 1.77965 1.86305 1.43043 1.65377 1.33496 1.22294 0.87366 0.95049 0.86033 1.22490 0.99096 0.99830 1.02520 1.21870 1.01813 0.99395 0.96222 1.22435 1.01714 0.97364 1.01806 0.90459 0.93478 0.93267 0.76855 0.76659 0.99753 0.99589 0.92180 0.93802 0.87885 0.88564 0.93577 0.88403 0.88530 0.92584 0.89619 0.91708 0.90890 0.88432 0.91666 0.91641 0.89702 0.91788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 7.27 71.98 0.52 -2.53 16 2 C 0.16 3.17 3.19 44.97 0.14 3.32 16 3 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 4 C 0.15 3.72 2.33 45.07 0.10 3.82 16 5 H 0.08 2.42 7.58 -2.39 -0.02 2.41 16 6 N -0.72 -22.41 3.58 -457.43 -1.64 -24.05 16 7 C 0.70 29.97 8.53 179.05 1.53 31.50 16 8 O -0.64 -33.29 16.01 -3.98 -0.06 -33.36 16 9 N -0.73 -33.15 5.55 -482.29 -2.68 -35.82 16 10 C 0.29 16.55 5.43 85.63 0.46 17.02 16 11 C -0.56 -31.34 9.28 25.60 0.24 -31.10 16 12 H 0.08 4.07 7.60 -2.91 -0.02 4.05 16 13 C 0.01 0.32 5.46 84.65 0.46 0.78 16 14 N -0.93 -56.98 13.29 21.45 0.28 -56.69 16 15 Si 0.98 43.17 29.54 68.60 2.03 45.19 16 16 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 17 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 18 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 19 C -0.13 -2.72 5.58 30.73 0.17 -2.55 16 20 C -0.13 -2.19 5.96 30.78 0.18 -2.01 16 21 C 0.12 1.60 6.45 86.36 0.56 2.15 16 22 N -0.59 -10.90 2.63 -925.22 -2.43 -13.34 16 23 C 0.65 14.13 7.53 129.79 0.98 15.11 16 24 O -0.58 -14.68 7.44 19.79 0.15 -14.54 16 25 O -0.37 -7.24 8.53 -55.44 -0.47 -7.71 16 26 C 0.13 2.14 1.13 -10.80 -0.01 2.13 16 27 C -0.18 -3.39 8.37 71.98 0.60 -2.79 16 28 C -0.14 -1.52 8.85 71.98 0.64 -0.88 16 29 C -0.18 -2.75 8.37 71.98 0.60 -2.15 16 30 H 0.08 1.85 6.67 -2.39 -0.02 1.84 16 31 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.05 1.38 6.06 -2.39 -0.01 1.37 16 33 H 0.40 11.34 7.83 -92.71 -0.73 10.62 16 34 H 0.40 15.70 8.34 -92.70 -0.77 14.92 16 35 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 36 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 37 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 38 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.10 1.52 8.14 -2.39 -0.02 1.51 16 40 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.05 1.03 7.54 -2.39 -0.02 1.02 16 42 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.10 1.29 6.92 -2.38 -0.02 1.27 16 44 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.06 1.55 5.88 -2.39 -0.01 1.54 16 47 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 48 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 49 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 50 H 0.06 1.36 5.88 -2.39 -0.01 1.35 16 51 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 52 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -75.13 402.32 1.79 -73.34 By element: Atomic # 1 Polarization: 35.73 SS G_CDS: -0.57 Total: 35.16 kcal Atomic # 6 Polarization: 24.63 SS G_CDS: 7.18 Total: 31.82 kcal Atomic # 7 Polarization: -123.44 SS G_CDS: -6.46 Total: -129.90 kcal Atomic # 8 Polarization: -55.22 SS G_CDS: -0.39 Total: -55.60 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.19 kcal Total: -75.13 1.79 -73.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787351434.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.718 kcal (2) G-P(sol) polarization free energy of solvation -75.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds