Wall clock time and date at job start Wed Apr 1 2020 01:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08992 * 109.61118 * 2 1 4 4 C 1.53377 * 109.60785 * 239.48831 * 2 1 3 5 5 H 1.09006 * 109.60682 * 169.93799 * 4 2 1 6 6 C 1.52994 * 109.60847 * 49.42661 * 4 2 1 7 7 N 1.46966 * 108.63341 * 289.68208 * 4 2 1 8 8 C 1.34771 * 120.59278 * 124.80184 * 7 4 2 9 9 O 1.21508 * 120.00357 * 5.66823 * 8 7 4 10 10 O 1.34645 * 119.99976 * 185.67809 * 8 7 4 11 11 C 1.45196 * 116.99899 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.47244 * 60.00099 * 11 10 8 13 13 C 1.53003 * 109.47087 * 180.02562 * 11 10 8 14 14 C 1.53003 * 109.47050 * 299.99867 * 11 10 8 15 15 C 1.46962 * 118.81083 * 304.77012 * 7 4 2 16 16 C 1.53375 * 108.63598 * 55.23339 * 15 7 4 17 17 N 1.46966 * 109.60993 * 120.34669 * 2 1 3 18 18 C 1.34774 * 120.59265 * 244.49526 * 17 2 1 19 19 O 1.21585 * 119.99913 * 354.75803 * 18 17 2 20 20 N 1.34778 * 120.00140 * 174.75756 * 18 17 2 21 21 C 1.46498 * 120.00066 * 174.86050 * 20 18 17 22 22 C 1.50699 * 109.47246 * 179.97438 * 21 20 18 23 23 H 1.08004 * 120.00054 * 359.97438 * 22 21 20 24 24 C 1.37873 * 120.00410 * 179.97438 * 22 21 20 25 25 N 1.31520 * 119.99908 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 120.00296 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.46695 * 60.00629 * 26 24 22 28 28 H 1.48503 * 109.46882 * 180.02562 * 26 24 22 29 29 H 1.48498 * 109.47442 * 300.00657 * 26 24 22 30 30 H 1.09006 * 109.47340 * 299.65646 * 1 2 3 31 31 H 1.09004 * 109.47498 * 179.65832 * 1 2 3 32 32 H 1.09003 * 109.47183 * 59.65436 * 1 2 3 33 33 H 1.08997 * 109.47197 * 53.40746 * 6 4 2 34 34 H 1.09000 * 109.46851 * 173.40926 * 6 4 2 35 35 H 1.08998 * 109.47144 * 293.40825 * 6 4 2 36 36 H 1.08990 * 109.47074 * 59.99715 * 12 11 10 37 37 H 1.08999 * 109.47114 * 179.97438 * 12 11 10 38 38 H 1.08999 * 109.47025 * 299.99484 * 12 11 10 39 39 H 1.09003 * 109.47241 * 59.99646 * 13 11 10 40 40 H 1.08999 * 109.47327 * 179.97438 * 13 11 10 41 41 H 1.09003 * 109.46662 * 299.99762 * 13 11 10 42 42 H 1.08999 * 109.47438 * 60.00382 * 14 11 10 43 43 H 1.08999 * 109.46940 * 180.02562 * 14 11 10 44 44 H 1.09003 * 109.47125 * 300.00260 * 14 11 10 45 45 H 1.09000 * 109.61385 * 295.48265 * 15 7 4 46 46 H 1.09000 * 109.61059 * 174.97684 * 15 7 4 47 47 H 1.09004 * 109.60990 * 190.83198 * 16 15 7 48 48 H 1.08995 * 109.75101 * 70.39727 * 16 15 7 49 49 H 0.96999 * 119.99670 * 354.85997 * 20 18 17 50 50 H 1.08998 * 109.46797 * 299.99592 * 21 20 18 51 51 H 1.08994 * 109.47566 * 60.00085 * 21 20 18 52 52 H 0.96996 * 120.00275 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8957 1.0267 0.0000 4 6 2.0446 -0.7336 -1.2448 5 1 3.1198 -0.5817 -1.3404 6 6 1.3339 -0.1957 -2.4883 7 7 1.7604 -2.1678 -1.0957 8 6 1.0604 -2.8298 -2.0381 9 8 0.7470 -2.2681 -3.0689 10 8 0.7082 -4.1138 -1.8372 11 6 -0.0451 -4.7638 -2.8947 12 6 0.7786 -4.7603 -4.1840 13 6 -0.3524 -6.2067 -2.4890 14 6 -1.3560 -4.0091 -3.1249 15 6 2.2537 -2.8671 0.0990 16 6 1.7389 -2.1336 1.3438 17 7 2.0232 -0.6995 1.1947 18 6 2.7239 -0.0376 2.1367 19 8 3.0353 1.1241 1.9585 20 7 3.0795 -0.6634 3.2761 21 6 3.9361 0.0183 4.2497 22 6 4.1825 -0.8912 5.4257 23 1 3.7445 -1.8782 5.4461 24 6 4.9671 -0.4634 6.4756 25 7 5.5000 0.7387 6.4511 26 14 5.2719 -1.5906 7.9337 27 1 5.9413 -2.8318 7.4683 28 1 6.1403 -0.8995 8.9205 29 1 3.9763 -1.9363 8.5717 30 1 -0.3634 0.5085 0.8931 31 1 -0.3634 -1.0277 -0.0061 32 1 -0.3634 0.5192 -0.8869 33 1 1.4359 0.8889 -2.5245 34 1 1.7822 -0.6328 -3.3805 35 1 0.2773 -0.4601 -2.4457 36 1 1.7124 -5.2979 -4.0199 37 1 0.2132 -5.2487 -4.9776 38 1 0.9971 -3.7323 -4.4728 39 1 -0.9394 -6.2088 -1.5706 40 1 -0.9184 -6.6946 -3.2826 41 1 0.5813 -6.7446 -2.3247 42 1 -1.1376 -2.9810 -3.4137 43 1 -1.9218 -4.4973 -3.9184 44 1 -1.9428 -4.0115 -2.2063 45 1 3.3436 -2.8672 0.0990 46 1 1.8854 -3.8930 0.1005 47 1 2.2453 -2.5168 2.2297 48 1 0.6641 -2.2852 1.4425 49 1 2.7683 -1.5652 3.4516 50 1 4.8868 0.2731 3.7815 51 1 3.4441 0.9287 4.5919 52 1 6.0517 1.0399 7.1899 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787357442.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:20:19 Heat of formation + Delta-G solvation = -104.818533 kcal Electronic energy + Delta-G solvation = -32134.536020 eV Core-core repulsion = 27941.602578 eV Total energy + Delta-G solvation = -4192.933442 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.31636 -41.23526 -39.50370 -37.65681 -36.28053 -35.56992 -35.10766 -34.34302 -33.86785 -30.21529 -29.51162 -28.83797 -28.28531 -28.22092 -26.29066 -24.74481 -24.28363 -23.51383 -21.70203 -20.82983 -20.21601 -19.56099 -18.34365 -17.91611 -17.64725 -17.51182 -17.25315 -16.74116 -16.49904 -16.22137 -15.91985 -15.53987 -15.42052 -15.12204 -14.96879 -14.65079 -14.44507 -14.18456 -13.90102 -13.80451 -13.77630 -13.58885 -13.18436 -13.10335 -12.97423 -12.89508 -12.82902 -12.72921 -12.68770 -12.66208 -12.46764 -12.37650 -12.20853 -12.16956 -11.97174 -11.89783 -11.47904 -11.26167 -11.16120 -10.77559 -10.47790 -10.24926 -9.86009 -9.25005 -8.26335 -6.42864 1.04560 1.44878 1.49281 1.57003 1.71490 1.79331 2.19045 2.39901 2.77429 3.08666 3.11610 3.61107 3.68810 3.82723 3.87706 3.93266 3.99376 4.02484 4.18094 4.20193 4.33686 4.41236 4.53211 4.61983 4.68770 4.71497 4.74277 4.80481 4.83522 4.84149 4.88748 4.92195 4.95168 5.05835 5.08288 5.14645 5.16108 5.29072 5.29338 5.35781 5.40472 5.45427 5.51112 5.53240 5.58888 5.70684 5.86060 6.07297 6.37962 6.68252 7.15909 7.27170 7.32605 7.67586 8.85710 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.017338 B = 0.002611 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.566336 B =10723.272131 C =11830.982101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.143 3.857 3 H 0.090 0.910 4 C 0.158 3.842 5 H 0.072 0.928 6 C -0.125 4.125 7 N -0.590 5.590 8 C 0.653 3.347 9 O -0.572 6.572 10 O -0.368 6.368 11 C 0.127 3.873 12 C -0.178 4.178 13 C -0.137 4.137 14 C -0.178 4.178 15 C 0.104 3.896 16 C 0.094 3.906 17 N -0.624 5.624 18 C 0.697 3.303 19 O -0.644 6.644 20 N -0.721 5.721 21 C 0.287 3.713 22 C -0.554 4.554 23 H 0.084 0.916 24 C 0.004 3.996 25 N -0.931 5.931 26 Si 0.985 3.015 27 H -0.260 1.260 28 H -0.287 1.287 29 H -0.262 1.262 30 H 0.049 0.951 31 H 0.060 0.940 32 H 0.085 0.915 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.057 0.943 37 H 0.087 0.913 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.099 0.901 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.086 0.914 44 H 0.059 0.941 45 H 0.075 0.925 46 H 0.125 0.875 47 H 0.101 0.899 48 H 0.089 0.911 49 H 0.403 0.597 50 H -0.014 1.014 51 H -0.016 1.016 52 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.277 -16.193 -20.246 29.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.038 3.962 3 H 0.109 0.891 4 C 0.055 3.945 5 H 0.090 0.910 6 C -0.183 4.183 7 N -0.331 5.331 8 C 0.409 3.591 9 O -0.462 6.462 10 O -0.284 6.284 11 C 0.091 3.909 12 C -0.235 4.235 13 C -0.194 4.194 14 C -0.235 4.235 15 C -0.020 4.020 16 C -0.030 4.030 17 N -0.361 5.361 18 C 0.398 3.602 19 O -0.526 6.526 20 N -0.377 5.377 21 C 0.163 3.837 22 C -0.591 4.591 23 H 0.102 0.898 24 C -0.195 4.195 25 N -0.569 5.569 26 Si 0.808 3.192 27 H -0.185 1.185 28 H -0.213 1.213 29 H -0.187 1.187 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.104 0.896 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.076 0.924 37 H 0.106 0.894 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.117 0.883 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.105 0.895 44 H 0.078 0.922 45 H 0.093 0.907 46 H 0.143 0.857 47 H 0.119 0.881 48 H 0.107 0.893 49 H 0.241 0.759 50 H 0.004 0.996 51 H 0.002 0.998 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.052 -15.153 -20.598 29.177 hybrid contribution 0.500 -0.107 0.988 1.113 sum -13.552 -15.260 -19.609 28.302 Atomic orbital electron populations 1.22023 0.93263 1.02435 1.02703 1.21517 0.95324 0.96789 0.82584 0.89144 1.21589 0.99753 0.77499 0.95705 0.91038 1.22146 1.01569 0.99539 0.95002 1.46957 1.55373 1.09304 1.21420 1.18092 0.77665 0.80742 0.82615 1.90947 1.59803 1.67910 1.27562 1.86303 1.69355 1.24323 1.48369 1.22345 0.90314 0.93065 0.85158 1.22453 1.00379 1.03714 0.96993 1.21879 1.03029 0.90979 1.03464 1.22457 0.95944 1.02200 1.02896 1.22188 0.99908 0.97315 0.82540 1.22224 1.02499 0.79112 0.99119 1.47311 1.57575 1.10152 1.21090 1.16191 0.78743 0.84308 0.80948 1.90828 1.62774 1.18152 1.80862 1.45453 1.54037 1.19464 1.18733 1.18400 0.87239 0.92105 0.85922 1.21548 1.32363 1.01891 1.03346 0.89770 1.26053 0.94734 0.96861 1.01877 1.70139 1.33363 1.19851 1.33579 0.85213 0.78564 0.78244 0.77221 1.18483 1.21274 1.18708 0.93151 0.92136 0.89620 0.92145 0.91177 0.90833 0.92360 0.89441 0.91643 0.91275 0.88282 0.91363 0.91508 0.89509 0.92221 0.90664 0.85722 0.88062 0.89311 0.75932 0.99635 0.99819 0.92285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.29 8.46 71.98 0.61 -2.68 16 2 C 0.14 3.86 2.90 45.03 0.13 3.99 16 3 H 0.09 2.92 6.99 -2.39 -0.02 2.90 16 4 C 0.16 3.73 3.37 45.03 0.15 3.88 16 5 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 6 C -0.13 -2.68 6.69 71.98 0.48 -2.20 16 7 N -0.59 -12.63 2.59 -924.35 -2.40 -15.03 16 8 C 0.65 14.24 7.55 129.79 0.98 15.22 16 9 O -0.57 -13.72 7.40 19.82 0.15 -13.57 16 10 O -0.37 -6.97 8.53 -55.54 -0.47 -7.44 16 11 C 0.13 1.88 1.13 -10.79 -0.01 1.87 16 12 C -0.18 -2.65 8.37 71.98 0.60 -2.04 16 13 C -0.14 -1.29 8.85 71.98 0.64 -0.66 16 14 C -0.18 -2.58 8.37 71.98 0.60 -1.98 16 15 C 0.10 1.94 6.61 86.42 0.57 2.51 16 16 C 0.09 2.01 6.10 86.42 0.53 2.53 16 17 N -0.62 -18.85 2.67 -812.02 -2.17 -21.01 16 18 C 0.70 29.28 8.29 179.05 1.48 30.76 16 19 O -0.64 -33.35 15.76 -3.98 -0.06 -33.41 16 20 N -0.72 -30.98 5.42 -482.31 -2.61 -33.59 16 21 C 0.29 15.82 5.43 85.63 0.47 16.28 16 22 C -0.55 -29.80 9.28 25.60 0.24 -29.56 16 23 H 0.08 4.04 7.60 -2.91 -0.02 4.02 16 24 C 0.00 0.24 5.46 84.65 0.46 0.70 16 25 N -0.93 -56.04 13.29 21.45 0.28 -55.75 16 26 Si 0.98 41.78 29.54 68.60 2.03 43.80 16 27 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 28 H -0.29 -12.18 7.11 99.48 0.71 -11.47 16 29 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 30 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 31 H 0.06 1.29 7.02 -2.39 -0.02 1.27 16 32 H 0.09 1.67 6.55 -2.39 -0.02 1.66 16 33 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.07 1.64 6.76 -2.39 -0.02 1.62 16 35 H 0.07 1.63 5.37 -2.39 -0.01 1.61 16 36 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.06 1.31 5.88 -2.39 -0.01 1.29 16 39 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.07 0.64 8.14 -2.39 -0.02 0.63 16 42 H 0.07 1.29 5.88 -2.39 -0.01 1.28 16 43 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.12 1.82 6.91 -2.39 -0.02 1.80 16 47 H 0.10 2.06 5.70 -2.38 -0.01 2.05 16 48 H 0.09 1.65 7.41 -2.39 -0.02 1.63 16 49 H 0.40 14.18 5.89 -92.71 -0.55 13.64 16 50 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 51 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 52 H 0.27 15.13 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -73.31 395.49 3.05 -70.25 By element: Atomic # 1 Polarization: 26.75 SS G_CDS: 0.38 Total: 27.13 kcal Atomic # 6 Polarization: 30.70 SS G_CDS: 7.93 Total: 38.63 kcal Atomic # 7 Polarization: -118.49 SS G_CDS: -6.89 Total: -125.38 kcal Atomic # 8 Polarization: -54.04 SS G_CDS: -0.39 Total: -54.43 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.80 kcal Total: -73.31 3.05 -70.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787357442.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.567 kcal (2) G-P(sol) polarization free energy of solvation -73.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds