Wall clock time and date at job start Wed Apr 1 2020 01:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.60412 * 2 1 4 4 C 1.52927 * 109.82883 * 239.68419 * 2 1 3 5 5 H 1.08998 * 109.45901 * 310.68410 * 4 2 1 6 6 C 1.53002 * 109.52392 * 71.04379 * 4 2 1 7 7 N 1.46961 * 108.87495 * 190.87974 * 4 2 1 8 8 C 1.34774 * 120.59859 * 235.21322 * 7 4 2 9 9 O 1.21514 * 119.99820 * 354.14329 * 8 7 4 10 10 O 1.34638 * 120.00264 * 174.14274 * 8 7 4 11 11 C 1.45202 * 116.99636 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.47465 * 60.00639 * 11 10 8 13 13 C 1.52998 * 109.47125 * 299.99874 * 11 10 8 14 14 C 1.53001 * 109.46648 * 180.02562 * 11 10 8 15 15 C 1.46961 * 118.80771 * 54.93515 * 7 4 2 16 16 C 1.53370 * 108.63844 * 305.02726 * 15 7 4 17 17 N 1.46961 * 109.60999 * 120.33774 * 2 1 3 18 18 C 1.34781 * 120.59739 * 355.12124 * 17 2 1 19 19 O 1.21583 * 119.99428 * 5.29820 * 18 17 2 20 20 N 1.34774 * 120.00032 * 185.29684 * 18 17 2 21 21 C 1.46505 * 119.99753 * 185.17321 * 20 18 17 22 22 C 1.50698 * 109.47019 * 179.97438 * 21 20 18 23 23 H 1.08005 * 119.99959 * 359.97438 * 22 21 20 24 24 C 1.37878 * 120.00069 * 179.97438 * 22 21 20 25 25 N 1.31512 * 119.99605 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99968 * 179.97438 * 24 22 21 27 27 H 1.48507 * 109.47061 * 90.00106 * 26 24 22 28 28 H 1.48505 * 109.47004 * 209.99953 * 26 24 22 29 29 H 1.48497 * 109.47065 * 330.00194 * 26 24 22 30 30 H 1.09005 * 109.47024 * 301.33206 * 1 2 3 31 31 H 1.08999 * 109.47355 * 61.33075 * 1 2 3 32 32 H 1.08999 * 109.47217 * 181.33532 * 1 2 3 33 33 H 1.09000 * 109.47655 * 186.21079 * 6 4 2 34 34 H 1.09004 * 109.47280 * 306.20811 * 6 4 2 35 35 H 1.09008 * 109.47108 * 66.20811 * 6 4 2 36 36 H 1.09000 * 109.46659 * 299.99871 * 12 11 10 37 37 H 1.08996 * 109.47153 * 179.97438 * 12 11 10 38 38 H 1.08999 * 109.47148 * 59.99285 * 12 11 10 39 39 H 1.09005 * 109.47159 * 180.02562 * 13 11 10 40 40 H 1.09004 * 109.47588 * 300.00202 * 13 11 10 41 41 H 1.09002 * 109.47151 * 60.00658 * 13 11 10 42 42 H 1.09001 * 109.47488 * 300.00015 * 14 11 10 43 43 H 1.09004 * 109.47365 * 60.00227 * 14 11 10 44 44 H 1.08996 * 109.47127 * 179.97438 * 14 11 10 45 45 H 1.09000 * 109.61426 * 64.77330 * 15 7 4 46 46 H 1.09009 * 109.60895 * 185.28218 * 15 7 4 47 47 H 1.08997 * 109.61189 * 169.17006 * 16 15 7 48 48 H 1.09009 * 109.60923 * 289.50796 * 16 15 7 49 49 H 0.96996 * 120.00116 * 5.17295 * 20 18 17 50 50 H 1.09001 * 109.46828 * 299.99754 * 21 20 18 51 51 H 1.08996 * 109.47001 * 59.99729 * 21 20 18 52 52 H 0.97004 * 119.99854 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8957 1.0268 0.0000 4 6 2.0488 -0.7262 -1.2419 5 1 1.5417 -1.6861 -1.3396 6 6 1.7815 0.1282 -2.4827 7 7 3.4947 -0.9447 -1.0956 8 6 4.3534 -0.5067 -2.0375 9 8 3.9295 -0.0209 -3.0674 10 8 5.6810 -0.6073 -1.8372 11 6 6.5462 -0.1158 -2.8946 12 6 6.2769 1.3728 -3.1234 13 6 6.2652 -0.8892 -4.1844 14 6 8.0085 -0.3136 -2.4902 15 6 3.9879 -1.6439 0.0992 16 6 3.4696 -0.9129 1.3439 17 7 2.0232 -0.6992 1.1948 18 6 1.1646 -1.1365 2.1372 19 8 -0.0342 -1.0402 1.9589 20 7 1.6349 -1.6803 3.2771 21 6 0.7053 -2.2582 4.2509 22 6 1.4795 -2.7954 5.4269 23 1 2.5564 -2.7148 5.4468 24 6 0.8132 -3.3898 6.4775 25 7 -0.4980 -3.4884 6.4531 26 14 1.7730 -4.0563 7.9349 27 1 1.9231 -2.9904 8.9580 28 1 1.0431 -5.2080 8.5234 29 1 3.1157 -4.5003 7.4820 30 1 -0.3633 0.5344 0.8778 31 1 -0.3634 0.4930 -0.9017 32 1 -0.3633 -1.0274 0.0239 33 1 2.0501 -0.4350 -3.3765 34 1 0.7242 0.3903 -2.5226 35 1 2.3799 1.0380 -2.4332 36 1 5.2351 1.5133 -3.4117 37 1 6.9267 1.7418 -3.9169 38 1 6.4770 1.9237 -2.2045 39 1 6.9151 -0.5205 -4.9781 40 1 6.4573 -1.9498 -4.0214 41 1 5.2235 -0.7487 -4.4727 42 1 8.2091 0.2371 -1.5711 43 1 8.2003 -1.3742 -2.3274 44 1 8.6581 0.0550 -3.2840 45 1 3.6222 -2.6707 0.0993 46 1 5.0780 -1.6412 0.1007 47 1 3.6606 -1.5184 2.2298 48 1 3.9757 0.0477 1.4412 49 1 2.5888 -1.6891 3.4528 50 1 0.0123 -1.4892 4.5924 51 1 0.1467 -3.0689 3.7832 52 1 -0.9668 -3.9062 7.1924 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787357448.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:20:29 Heat of formation + Delta-G solvation = -69.872945 kcal Electronic energy + Delta-G solvation = -32053.150989 eV Core-core repulsion = 27861.732901 eV Total energy + Delta-G solvation = -4191.418088 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.32699 -40.09191 -38.27300 -36.54689 -35.01529 -34.37557 -33.80843 -33.25238 -32.12473 -28.76372 -28.53603 -27.68415 -27.64260 -26.84465 -24.96797 -23.39928 -22.77796 -22.19103 -20.82847 -19.77221 -19.21437 -18.08559 -17.16339 -16.81884 -16.41566 -16.17900 -15.80512 -15.73640 -15.29144 -14.81731 -14.73976 -14.65574 -14.04525 -13.97130 -13.76686 -13.47566 -13.03775 -12.98460 -12.90147 -12.70001 -12.45115 -12.28140 -12.17579 -12.09581 -12.00024 -11.88058 -11.74212 -11.69285 -11.60520 -11.54599 -11.29943 -11.23016 -11.00001 -10.94048 -10.88036 -10.54366 -10.26711 -9.50489 -9.37796 -9.20611 -8.73092 -8.64659 -8.21190 -7.74910 -6.16759 -4.23388 1.91497 2.68339 3.05940 3.23621 3.30132 3.32247 3.59068 3.84569 4.29116 4.43960 4.48536 4.52947 4.62658 4.63592 4.84846 4.90261 5.01372 5.09985 5.17101 5.17917 5.19575 5.25115 5.31120 5.40209 5.43865 5.48583 5.56350 5.57855 5.58098 5.65708 5.70150 5.77588 5.95868 6.01324 6.03429 6.07570 6.18348 6.25993 6.40304 6.46648 6.58643 6.94674 7.07597 7.26665 7.49508 7.53135 7.55928 7.82575 8.00528 8.20301 8.73562 8.87281 9.29999 9.45949 10.93394 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016389 B = 0.002641 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.089048 B =10598.094538 C =11966.966959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.155 3.845 3 H 0.067 0.933 4 C 0.147 3.853 5 H 0.082 0.918 6 C -0.137 4.137 7 N -0.591 5.591 8 C 0.654 3.346 9 O -0.562 6.562 10 O -0.366 6.366 11 C 0.137 3.863 12 C -0.182 4.182 13 C -0.182 4.182 14 C -0.141 4.141 15 C 0.098 3.902 16 C 0.098 3.902 17 N -0.638 5.638 18 C 0.697 3.303 19 O -0.586 6.586 20 N -0.730 5.730 21 C 0.267 3.733 22 C -0.542 4.542 23 H 0.061 0.939 24 C 0.064 3.936 25 N -0.885 5.885 26 Si 0.903 3.097 27 H -0.279 1.279 28 H -0.285 1.285 29 H -0.273 1.273 30 H 0.080 0.920 31 H 0.040 0.960 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.068 0.932 40 H 0.058 0.942 41 H 0.088 0.912 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.102 0.898 47 H 0.096 0.904 48 H 0.069 0.931 49 H 0.384 0.616 50 H 0.025 0.975 51 H 0.024 0.976 52 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.566 7.233 -19.791 26.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.050 3.950 3 H 0.085 0.915 4 C 0.045 3.955 5 H 0.100 0.900 6 C -0.194 4.194 7 N -0.331 5.331 8 C 0.409 3.591 9 O -0.452 6.452 10 O -0.281 6.281 11 C 0.100 3.900 12 C -0.240 4.240 13 C -0.240 4.240 14 C -0.198 4.198 15 C -0.026 4.026 16 C -0.027 4.027 17 N -0.378 5.378 18 C 0.399 3.601 19 O -0.465 6.465 20 N -0.384 5.384 21 C 0.146 3.854 22 C -0.580 4.580 23 H 0.079 0.921 24 C -0.140 4.140 25 N -0.522 5.522 26 Si 0.730 3.270 27 H -0.205 1.205 28 H -0.210 1.210 29 H -0.198 1.198 30 H 0.099 0.901 31 H 0.058 0.942 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.107 0.893 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.107 0.893 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.097 0.903 45 H 0.096 0.904 46 H 0.120 0.880 47 H 0.114 0.886 48 H 0.087 0.913 49 H 0.218 0.782 50 H 0.043 0.957 51 H 0.042 0.958 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 14.428 7.345 -20.106 25.814 hybrid contribution 1.144 -0.460 1.048 1.618 sum 15.572 6.885 -19.059 25.556 Atomic orbital electron populations 1.22196 0.91163 1.04535 1.00925 1.21383 0.96719 0.94368 0.82542 0.91518 1.21771 0.76945 1.00282 0.96517 0.90019 1.22235 1.00325 1.00641 0.96193 1.47028 1.05852 1.59113 1.21110 1.18063 0.80628 0.77516 0.82869 1.90942 1.77230 1.49775 1.27254 1.86300 1.16099 1.78199 1.47526 1.22024 0.88457 0.94071 0.85453 1.22507 1.05075 0.94082 1.02290 1.22507 1.05058 1.00023 0.96370 1.21860 0.92104 1.03212 1.02640 1.22171 1.00446 0.96209 0.83756 1.21952 0.81817 1.00820 0.98063 1.47333 1.05471 1.62882 1.22074 1.16114 0.84959 0.78641 0.80410 1.90923 1.13712 1.62542 1.79359 1.45997 1.11074 1.62129 1.19214 1.18972 0.88281 0.93187 0.84936 1.21209 0.93513 1.39891 1.03438 0.92058 1.24937 0.94939 0.95654 0.98443 1.69976 1.06894 1.43158 1.32186 0.86428 0.79760 0.78582 0.82192 1.20490 1.21021 1.19769 0.90122 0.94156 0.90454 0.90305 0.92729 0.91267 0.89314 0.91341 0.92256 0.91341 0.92284 0.89323 0.91457 0.91493 0.90282 0.90398 0.88007 0.88582 0.91258 0.78173 0.95664 0.95839 0.92459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.97 7.45 37.16 0.28 -1.69 16 2 C 0.16 2.14 3.05 -67.72 -0.21 1.93 16 3 H 0.07 0.89 8.11 -51.93 -0.42 0.47 16 4 C 0.15 1.82 3.07 -67.72 -0.21 1.61 16 5 H 0.08 1.07 8.11 -51.93 -0.42 0.65 16 6 C -0.14 -1.56 7.52 37.16 0.28 -1.28 16 7 N -0.59 -6.97 2.95 -170.96 -0.50 -7.47 16 8 C 0.65 7.88 7.55 54.05 0.41 8.29 16 9 O -0.56 -7.24 7.40 -19.28 -0.14 -7.38 16 10 O -0.37 -3.95 8.53 -40.32 -0.34 -4.30 16 11 C 0.14 1.19 1.13 -90.62 -0.10 1.09 16 12 C -0.18 -1.55 8.37 37.16 0.31 -1.24 16 13 C -0.18 -1.55 8.37 37.16 0.31 -1.24 16 14 C -0.14 -0.90 8.85 37.16 0.33 -0.57 16 15 C 0.10 1.03 6.62 -3.60 -0.02 1.01 16 16 C 0.10 1.15 6.52 -3.60 -0.02 1.13 16 17 N -0.64 -9.72 2.95 -170.90 -0.50 -10.22 16 18 C 0.70 13.89 8.21 -86.92 -0.71 13.17 16 19 O -0.59 -13.55 11.73 5.29 0.06 -13.48 16 20 N -0.73 -15.21 5.41 -66.41 -0.36 -15.57 16 21 C 0.27 6.99 5.43 -5.19 -0.03 6.96 16 22 C -0.54 -14.48 9.28 -34.44 -0.32 -14.80 16 23 H 0.06 1.53 7.60 -52.48 -0.40 1.13 16 24 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 25 N -0.88 -25.83 13.29 55.43 0.74 -25.09 16 26 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 29 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 30 H 0.08 1.42 6.69 -51.93 -0.35 1.07 16 31 H 0.04 0.50 6.68 -51.93 -0.35 0.15 16 32 H 0.08 1.34 6.79 -51.93 -0.35 0.98 16 33 H 0.08 0.97 6.71 -51.93 -0.35 0.62 16 34 H 0.05 0.57 6.59 -51.93 -0.34 0.22 16 35 H 0.07 0.85 6.77 -51.92 -0.35 0.50 16 36 H 0.09 0.94 5.88 -51.93 -0.31 0.64 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.09 0.94 5.88 -51.93 -0.31 0.64 16 42 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.10 0.91 6.91 -51.92 -0.36 0.55 16 47 H 0.10 1.08 5.70 -51.93 -0.30 0.79 16 48 H 0.07 0.75 8.14 -51.92 -0.42 0.32 16 49 H 0.38 6.89 5.89 -40.82 -0.24 6.65 16 50 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 51 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 52 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 392.20 15.07 5.91 5.91 Total: -1.00 -31.53 392.20 -8.60 -40.12 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -8.62 Total: 5.88 kcal Atomic # 6 Polarization: 15.83 SS G_CDS: 0.19 Total: 16.02 kcal Atomic # 7 Polarization: -57.73 SS G_CDS: -0.63 Total: -58.36 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -0.42 Total: -25.16 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.53 -8.60 -40.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787357448.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.749 kcal (2) G-P(sol) polarization free energy of solvation -31.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds