Wall clock time and date at job start Wed Apr 1 2020 01:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.60412 * 2 1 4 4 C 1.52927 * 109.82883 * 239.68419 * 2 1 3 5 5 H 1.08998 * 109.45901 * 310.68410 * 4 2 1 6 6 C 1.53002 * 109.52392 * 71.04379 * 4 2 1 7 7 N 1.46961 * 108.87495 * 190.87974 * 4 2 1 8 8 C 1.34774 * 120.59859 * 235.21322 * 7 4 2 9 9 O 1.21514 * 119.99820 * 354.14329 * 8 7 4 10 10 O 1.34638 * 120.00264 * 174.14274 * 8 7 4 11 11 C 1.45202 * 116.99636 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.47465 * 60.00639 * 11 10 8 13 13 C 1.52998 * 109.47125 * 299.99874 * 11 10 8 14 14 C 1.53001 * 109.46648 * 180.02562 * 11 10 8 15 15 C 1.46961 * 118.80771 * 54.93515 * 7 4 2 16 16 C 1.53370 * 108.63844 * 305.02726 * 15 7 4 17 17 N 1.46961 * 109.60999 * 120.33774 * 2 1 3 18 18 C 1.34781 * 120.59739 * 355.12124 * 17 2 1 19 19 O 1.21583 * 119.99428 * 5.29820 * 18 17 2 20 20 N 1.34774 * 120.00032 * 185.29684 * 18 17 2 21 21 C 1.46505 * 119.99753 * 185.17321 * 20 18 17 22 22 C 1.50698 * 109.47019 * 179.97438 * 21 20 18 23 23 H 1.08005 * 119.99959 * 359.97438 * 22 21 20 24 24 C 1.37878 * 120.00069 * 179.97438 * 22 21 20 25 25 N 1.31512 * 119.99605 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99968 * 179.97438 * 24 22 21 27 27 H 1.48507 * 109.47061 * 90.00106 * 26 24 22 28 28 H 1.48505 * 109.47004 * 209.99953 * 26 24 22 29 29 H 1.48497 * 109.47065 * 330.00194 * 26 24 22 30 30 H 1.09005 * 109.47024 * 301.33206 * 1 2 3 31 31 H 1.08999 * 109.47355 * 61.33075 * 1 2 3 32 32 H 1.08999 * 109.47217 * 181.33532 * 1 2 3 33 33 H 1.09000 * 109.47655 * 186.21079 * 6 4 2 34 34 H 1.09004 * 109.47280 * 306.20811 * 6 4 2 35 35 H 1.09008 * 109.47108 * 66.20811 * 6 4 2 36 36 H 1.09000 * 109.46659 * 299.99871 * 12 11 10 37 37 H 1.08996 * 109.47153 * 179.97438 * 12 11 10 38 38 H 1.08999 * 109.47148 * 59.99285 * 12 11 10 39 39 H 1.09005 * 109.47159 * 180.02562 * 13 11 10 40 40 H 1.09004 * 109.47588 * 300.00202 * 13 11 10 41 41 H 1.09002 * 109.47151 * 60.00658 * 13 11 10 42 42 H 1.09001 * 109.47488 * 300.00015 * 14 11 10 43 43 H 1.09004 * 109.47365 * 60.00227 * 14 11 10 44 44 H 1.08996 * 109.47127 * 179.97438 * 14 11 10 45 45 H 1.09000 * 109.61426 * 64.77330 * 15 7 4 46 46 H 1.09009 * 109.60895 * 185.28218 * 15 7 4 47 47 H 1.08997 * 109.61189 * 169.17006 * 16 15 7 48 48 H 1.09009 * 109.60923 * 289.50796 * 16 15 7 49 49 H 0.96996 * 120.00116 * 5.17295 * 20 18 17 50 50 H 1.09001 * 109.46828 * 299.99754 * 21 20 18 51 51 H 1.08996 * 109.47001 * 59.99729 * 21 20 18 52 52 H 0.97004 * 119.99854 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8957 1.0268 0.0000 4 6 2.0488 -0.7262 -1.2419 5 1 1.5417 -1.6861 -1.3396 6 6 1.7815 0.1282 -2.4827 7 7 3.4947 -0.9447 -1.0956 8 6 4.3534 -0.5067 -2.0375 9 8 3.9295 -0.0209 -3.0674 10 8 5.6810 -0.6073 -1.8372 11 6 6.5462 -0.1158 -2.8946 12 6 6.2769 1.3728 -3.1234 13 6 6.2652 -0.8892 -4.1844 14 6 8.0085 -0.3136 -2.4902 15 6 3.9879 -1.6439 0.0992 16 6 3.4696 -0.9129 1.3439 17 7 2.0232 -0.6992 1.1948 18 6 1.1646 -1.1365 2.1372 19 8 -0.0342 -1.0402 1.9589 20 7 1.6349 -1.6803 3.2771 21 6 0.7053 -2.2582 4.2509 22 6 1.4795 -2.7954 5.4269 23 1 2.5564 -2.7148 5.4468 24 6 0.8132 -3.3898 6.4775 25 7 -0.4980 -3.4884 6.4531 26 14 1.7730 -4.0563 7.9349 27 1 1.9231 -2.9904 8.9580 28 1 1.0431 -5.2080 8.5234 29 1 3.1157 -4.5003 7.4820 30 1 -0.3633 0.5344 0.8778 31 1 -0.3634 0.4930 -0.9017 32 1 -0.3633 -1.0274 0.0239 33 1 2.0501 -0.4350 -3.3765 34 1 0.7242 0.3903 -2.5226 35 1 2.3799 1.0380 -2.4332 36 1 5.2351 1.5133 -3.4117 37 1 6.9267 1.7418 -3.9169 38 1 6.4770 1.9237 -2.2045 39 1 6.9151 -0.5205 -4.9781 40 1 6.4573 -1.9498 -4.0214 41 1 5.2235 -0.7487 -4.4727 42 1 8.2091 0.2371 -1.5711 43 1 8.2003 -1.3742 -2.3274 44 1 8.6581 0.0550 -3.2840 45 1 3.6222 -2.6707 0.0993 46 1 5.0780 -1.6412 0.1007 47 1 3.6606 -1.5184 2.2298 48 1 3.9757 0.0477 1.4412 49 1 2.5888 -1.6891 3.4528 50 1 0.0123 -1.4892 4.5924 51 1 0.1467 -3.0689 3.7832 52 1 -0.9668 -3.9062 7.1924 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787357448.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:20:28 Heat of formation + Delta-G solvation = -90.012057 kcal Electronic energy + Delta-G solvation = -32054.024286 eV Core-core repulsion = 27861.732901 eV Total energy + Delta-G solvation = -4192.291385 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.31070 -41.35225 -39.38243 -37.60764 -36.49745 -35.50900 -35.15883 -34.43160 -33.82672 -30.13537 -29.60559 -28.63329 -28.29566 -28.22557 -26.12970 -24.78437 -24.16211 -23.35999 -21.96599 -21.06173 -20.35089 -19.33314 -18.44878 -17.74335 -17.68139 -17.43535 -17.34142 -16.78757 -16.51990 -16.42904 -15.68639 -15.61738 -15.41492 -15.10923 -14.78270 -14.67655 -14.46112 -14.08108 -13.93179 -13.83643 -13.78693 -13.48436 -13.17237 -13.07636 -12.94298 -12.85605 -12.81077 -12.77384 -12.72243 -12.68116 -12.63226 -12.40941 -12.32006 -12.15198 -12.06611 -11.95317 -11.43676 -11.28445 -10.77038 -10.51092 -10.32485 -10.14953 -9.77790 -9.24248 -8.26233 -6.42223 1.02820 1.44922 1.47363 1.58089 1.72970 1.77255 2.24508 2.39870 2.75940 3.09046 3.13356 3.60180 3.72384 3.81797 3.86659 3.90957 3.99837 4.01491 4.15089 4.17460 4.31533 4.45943 4.54147 4.61316 4.67811 4.69848 4.77407 4.82979 4.83411 4.88857 4.91222 4.94215 5.05169 5.07951 5.09420 5.14715 5.25999 5.31661 5.34682 5.34999 5.40079 5.47274 5.49624 5.54737 5.70534 5.75378 5.88061 6.08765 6.35695 6.69621 7.19801 7.28001 7.30138 7.74433 8.85905 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016389 B = 0.002641 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.089048 B =10598.094538 C =11966.966959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.156 3.844 3 H 0.080 0.920 4 C 0.155 3.845 5 H 0.073 0.927 6 C -0.124 4.124 7 N -0.594 5.594 8 C 0.652 3.348 9 O -0.572 6.572 10 O -0.368 6.368 11 C 0.127 3.873 12 C -0.178 4.178 13 C -0.178 4.178 14 C -0.136 4.136 15 C 0.103 3.897 16 C 0.095 3.905 17 N -0.629 5.629 18 C 0.694 3.306 19 O -0.624 6.624 20 N -0.725 5.725 21 C 0.288 3.712 22 C -0.553 4.553 23 H 0.083 0.917 24 C 0.005 3.995 25 N -0.930 5.930 26 Si 0.983 3.017 27 H -0.272 1.272 28 H -0.285 1.285 29 H -0.254 1.254 30 H 0.050 0.950 31 H 0.070 0.930 32 H 0.049 0.951 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.087 0.913 38 H 0.058 0.942 39 H 0.087 0.913 40 H 0.058 0.942 41 H 0.064 0.936 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.099 0.901 45 H 0.075 0.925 46 H 0.125 0.875 47 H 0.102 0.898 48 H 0.088 0.912 49 H 0.400 0.600 50 H -0.016 1.016 51 H -0.014 1.014 52 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.135 7.472 -20.197 28.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.051 3.949 3 H 0.098 0.902 4 C 0.052 3.948 5 H 0.091 0.909 6 C -0.181 4.181 7 N -0.334 5.334 8 C 0.408 3.592 9 O -0.463 6.463 10 O -0.283 6.283 11 C 0.091 3.909 12 C -0.235 4.235 13 C -0.235 4.235 14 C -0.193 4.193 15 C -0.020 4.020 16 C -0.029 4.029 17 N -0.368 5.368 18 C 0.396 3.604 19 O -0.506 6.506 20 N -0.381 5.381 21 C 0.165 3.835 22 C -0.591 4.591 23 H 0.101 0.899 24 C -0.195 4.195 25 N -0.569 5.569 26 Si 0.806 3.194 27 H -0.198 1.198 28 H -0.211 1.211 29 H -0.177 1.177 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.106 0.894 38 H 0.078 0.922 39 H 0.106 0.894 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.118 0.882 45 H 0.093 0.907 46 H 0.143 0.857 47 H 0.120 0.880 48 H 0.106 0.894 49 H 0.238 0.762 50 H 0.002 0.998 51 H 0.004 0.996 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 18.083 7.608 -20.564 28.422 hybrid contribution 0.041 -0.470 1.041 1.143 sum 18.124 7.139 -19.524 27.579 Atomic orbital electron populations 1.21979 0.92272 1.02641 1.00943 1.21489 0.95854 0.95046 0.82492 0.90233 1.21592 0.77546 0.99775 0.95921 0.90889 1.22098 1.00852 0.99916 0.95230 1.47034 1.05533 1.59296 1.21573 1.18124 0.81127 0.77323 0.82646 1.90950 1.77602 1.50077 1.27665 1.86303 1.15385 1.78197 1.48422 1.22360 0.89330 0.94067 0.85183 1.22455 1.04010 0.94131 1.02920 1.22457 1.03955 1.00155 0.96970 1.21879 0.90436 1.03529 1.03485 1.22201 1.01651 0.95614 0.82525 1.22225 0.79345 1.02219 0.99087 1.47319 1.06616 1.61694 1.21126 1.16273 0.84966 0.78435 0.80765 1.90920 1.15780 1.63795 1.80117 1.45586 1.11141 1.62427 1.18948 1.18365 0.88438 0.90823 0.85861 1.21590 0.94557 1.39554 1.03369 0.89904 1.26032 0.95861 0.95764 1.01848 1.70142 1.09093 1.44247 1.33429 0.85182 0.78700 0.77675 0.77804 1.19773 1.21103 1.17746 0.93076 0.91157 0.93147 0.91013 0.91655 0.91819 0.91622 0.89408 0.92246 0.89373 0.92294 0.91701 0.91272 0.91317 0.88227 0.90655 0.85739 0.87961 0.89355 0.76240 0.99789 0.99630 0.92322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.72 7.45 71.98 0.54 -3.18 16 2 C 0.16 4.20 3.05 44.88 0.14 4.34 16 3 H 0.08 2.01 8.11 -2.39 -0.02 1.99 16 4 C 0.15 3.69 3.07 44.88 0.14 3.83 16 5 H 0.07 1.90 8.11 -2.39 -0.02 1.88 16 6 C -0.12 -2.70 7.52 71.98 0.54 -2.16 16 7 N -0.59 -13.10 2.95 -925.20 -2.73 -15.83 16 8 C 0.65 14.71 7.55 129.79 0.98 15.69 16 9 O -0.57 -14.20 7.40 19.80 0.15 -14.06 16 10 O -0.37 -7.16 8.53 -55.47 -0.47 -7.63 16 11 C 0.13 1.92 1.13 -10.80 -0.01 1.91 16 12 C -0.18 -2.67 8.37 71.98 0.60 -2.07 16 13 C -0.18 -2.69 8.37 71.98 0.60 -2.09 16 14 C -0.14 -1.32 8.85 71.98 0.64 -0.68 16 15 C 0.10 1.96 6.62 86.42 0.57 2.53 16 16 C 0.09 2.03 6.52 86.41 0.56 2.59 16 17 N -0.63 -18.89 2.95 -812.85 -2.40 -21.29 16 18 C 0.69 28.37 8.21 179.05 1.47 29.84 16 19 O -0.62 -30.43 11.73 -3.98 -0.05 -30.48 16 20 N -0.73 -30.74 5.41 -482.30 -2.61 -33.35 16 21 C 0.29 15.74 5.43 85.63 0.47 16.20 16 22 C -0.55 -29.66 9.28 25.60 0.24 -29.42 16 23 H 0.08 3.99 7.60 -2.91 -0.02 3.97 16 24 C 0.00 0.25 5.46 84.66 0.46 0.71 16 25 N -0.93 -55.82 13.29 21.45 0.28 -55.53 16 26 Si 0.98 41.78 29.54 68.60 2.03 43.81 16 27 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 28 H -0.29 -12.08 7.11 99.48 0.71 -11.37 16 29 H -0.25 -9.94 7.11 99.48 0.71 -9.23 16 30 H 0.05 1.88 6.69 -2.38 -0.02 1.86 16 31 H 0.07 1.70 6.68 -2.39 -0.02 1.68 16 32 H 0.05 1.82 6.79 -2.39 -0.02 1.80 16 33 H 0.07 1.70 6.71 -2.39 -0.02 1.69 16 34 H 0.06 1.27 6.59 -2.38 -0.02 1.25 16 35 H 0.06 1.48 6.77 -2.38 -0.02 1.47 16 36 H 0.06 1.32 5.88 -2.39 -0.01 1.30 16 37 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 40 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 41 H 0.06 1.32 5.88 -2.39 -0.01 1.30 16 42 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 44 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 45 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.12 1.85 6.91 -2.38 -0.02 1.84 16 47 H 0.10 2.08 5.70 -2.39 -0.01 2.07 16 48 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 49 H 0.40 14.05 5.89 -92.71 -0.55 13.50 16 50 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 51 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 52 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -71.50 392.20 2.51 -68.99 By element: Atomic # 1 Polarization: 26.96 SS G_CDS: 0.38 Total: 27.34 kcal Atomic # 6 Polarization: 30.10 SS G_CDS: 7.93 Total: 38.04 kcal Atomic # 7 Polarization: -118.55 SS G_CDS: -7.46 Total: -126.00 kcal Atomic # 8 Polarization: -51.80 SS G_CDS: -0.37 Total: -52.17 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Total: -71.50 2.51 -68.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787357448.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.019 kcal (2) G-P(sol) polarization free energy of solvation -71.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds